Wall clock time and date at job start Wed Apr 1 2020 01:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47202 * 2 1 4 4 C 1.53004 * 109.47336 * 120.00346 * 2 1 3 5 5 H 1.08998 * 109.47202 * 297.67166 * 4 2 1 6 6 C 1.50701 * 109.47182 * 177.67148 * 4 2 1 7 7 O 1.21282 * 119.99601 * 326.40452 * 6 4 2 8 8 N 1.34765 * 119.99968 * 146.40227 * 6 4 2 9 9 C 1.47889 * 134.34297 * 185.19525 * 8 6 4 10 10 C 1.52372 * 85.59160 * 156.53646 * 9 8 6 11 11 C 1.47898 * 134.34329 * 5.22853 * 8 6 4 12 12 C 1.53652 * 116.39007 * 141.36364 * 10 9 8 13 13 C 1.54598 * 102.73651 * 95.48625 * 12 10 9 14 14 N 1.47134 * 107.36281 * 20.75187 * 13 12 10 15 15 C 1.36942 * 125.58651 * 180.66559 * 14 13 12 16 16 H 1.07999 * 120.00275 * 173.47761 * 15 14 13 17 17 C 1.38809 * 119.99944 * 353.48053 * 15 14 13 18 18 N 1.31619 * 120.00035 * 8.12250 * 17 15 14 19 19 Si 1.86798 * 120.00122 * 188.11834 * 17 15 14 20 20 H 1.48500 * 109.47222 * 94.96951 * 19 17 15 21 21 H 1.48504 * 109.47411 * 214.97101 * 19 17 15 22 22 H 1.48500 * 109.46954 * 334.97262 * 19 17 15 23 23 C 1.47718 * 108.82721 * 0.92922 * 14 13 12 24 24 C 1.50699 * 109.46923 * 57.67362 * 4 2 1 25 25 C 1.38231 * 120.00383 * 59.72270 * 24 4 2 26 26 C 1.38234 * 120.00314 * 179.80934 * 25 24 4 27 27 C 1.38235 * 119.99817 * 0.39984 * 26 25 24 28 28 C 1.38241 * 119.99931 * 359.85782 * 27 26 25 29 29 C 1.38228 * 119.99977 * 359.95235 * 28 27 26 30 30 H 1.09008 * 109.46747 * 299.99370 * 1 2 3 31 31 H 1.09003 * 109.47293 * 59.99539 * 1 2 3 32 32 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46655 * 240.00482 * 2 1 3 34 34 H 1.09001 * 109.47364 * 185.73112 * 3 2 1 35 35 H 1.08998 * 109.47450 * 305.73652 * 3 2 1 36 36 H 1.09001 * 109.47131 * 65.73542 * 3 2 1 37 37 H 1.09002 * 113.85158 * 42.37131 * 9 8 6 38 38 H 1.09005 * 113.85857 * 270.70202 * 9 8 6 39 39 H 1.08992 * 113.85454 * 89.29756 * 11 8 6 40 40 H 1.09000 * 113.84722 * 317.62634 * 11 8 6 41 41 H 1.09005 * 110.76068 * 337.17108 * 12 10 9 42 42 H 1.09000 * 110.91887 * 213.87393 * 12 10 9 43 43 H 1.09006 * 109.86357 * 261.31003 * 13 12 10 44 44 H 1.09001 * 109.98245 * 140.26345 * 13 12 10 45 45 H 0.97003 * 120.00263 * 180.02562 * 18 17 15 46 46 H 1.09006 * 110.39709 * 96.33388 * 23 14 13 47 47 H 1.09000 * 110.40390 * 218.74200 * 23 14 13 48 48 H 1.08005 * 120.00083 * 0.02562 * 25 24 4 49 49 H 1.08002 * 120.00253 * 180.23884 * 26 25 24 50 50 H 1.08001 * 120.00198 * 179.83261 * 27 26 25 51 51 H 1.07994 * 119.99817 * 179.97438 * 28 27 26 52 52 H 1.08001 * 119.99996 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7112 -0.1840 2.1387 6 6 3.5459 -0.7715 1.2206 7 8 4.1293 -0.8713 0.1620 8 7 4.2443 -0.7054 2.3713 9 6 5.6832 -0.6296 2.7043 10 6 5.2261 -0.0058 4.0173 11 6 3.8767 -0.6804 3.8037 12 6 6.0042 -0.4179 5.2765 13 6 7.0417 0.7188 5.4233 14 7 6.5333 1.8770 4.6716 15 6 7.1674 3.0839 4.5425 16 1 6.7639 3.8381 3.8832 17 6 8.3287 3.3380 5.2592 18 7 8.9089 2.3702 5.9368 19 14 9.0682 5.0533 5.2620 20 1 8.5904 5.7965 6.4556 21 1 10.5493 4.9539 5.3009 22 1 8.6526 5.7735 4.0315 23 6 5.2240 1.5267 4.0842 24 6 1.4912 -2.1245 1.2783 25 6 1.7719 -2.9981 0.2444 26 6 1.2717 -4.2865 0.2730 27 6 0.4839 -4.6986 1.3315 28 6 0.1987 -3.8233 2.3628 29 6 0.7022 -2.5363 2.3361 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 3.1252 1.4442 -0.1026 35 1 1.5953 1.9852 -0.8341 36 1 1.7629 1.9258 0.9369 37 1 6.2480 0.0503 2.0664 38 1 6.1606 -1.6025 2.8212 39 1 3.8014 -1.6689 4.2567 40 1 3.0235 -0.0405 4.0286 41 1 6.5004 -1.3770 5.1275 42 1 5.3469 -0.4557 6.1452 43 1 7.9997 0.4014 5.0115 44 1 7.1595 0.9822 6.4745 45 1 9.7202 2.5477 6.4379 46 1 4.4144 1.8779 4.7240 47 1 5.1304 1.9506 3.0844 48 1 2.3850 -2.6752 -0.5840 49 1 1.4942 -4.9702 -0.5328 50 1 0.0908 -5.7044 1.3526 51 1 -0.4171 -4.1452 3.1895 52 1 0.4797 -1.8526 3.1420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073016178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:18 Heat of formation + Delta-G solvation = 25.326390 kcal Electronic energy + Delta-G solvation = -30794.221565 eV Core-core repulsion = 26952.354982 eV Total energy + Delta-G solvation = -3841.866583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.00497 -40.73463 -39.27903 -37.31109 -36.67192 -34.12871 -32.58545 -31.75080 -31.39987 -30.04993 -28.56755 -27.89015 -27.35862 -26.99076 -25.24852 -23.59487 -22.68463 -22.15490 -21.45578 -20.07039 -19.50679 -18.82597 -18.02801 -17.88335 -17.16640 -16.73194 -16.63852 -16.14192 -15.99128 -15.74818 -15.55163 -15.25699 -15.01698 -14.53167 -14.30219 -14.19530 -14.11966 -13.74019 -13.62172 -13.50936 -13.45930 -13.31357 -13.20398 -13.00182 -12.86196 -12.79622 -12.45561 -12.41028 -12.09994 -12.02832 -11.95803 -11.94397 -11.79234 -11.65702 -11.62397 -11.52786 -11.27941 -10.74186 -10.64035 -9.79100 -9.70873 -9.57549 -8.86797 -7.86476 -5.19505 0.40326 0.53042 1.45052 1.46037 1.54902 1.62326 1.80255 2.48679 2.87379 3.28575 3.37656 3.40488 3.61026 3.69053 3.77898 3.80893 4.00956 4.13415 4.14380 4.18869 4.19443 4.27916 4.36887 4.40982 4.46312 4.57562 4.62573 4.63862 4.67836 4.70932 4.76136 4.78091 4.81651 4.82803 4.96711 4.98258 4.99109 5.07351 5.10791 5.14585 5.19094 5.21829 5.24907 5.35192 5.41988 5.46536 5.60113 5.65997 5.70735 5.72820 5.80764 6.13083 6.21512 6.73628 7.11763 7.12815 7.78738 8.42660 9.24003 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.002748 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.011464 B =10185.104051 C =11020.567242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 C -0.148 4.148 4 C -0.048 4.048 5 H 0.114 0.886 6 C 0.540 3.460 7 O -0.588 6.588 8 N -0.641 5.641 9 C 0.122 3.878 10 C -0.096 4.096 11 C 0.133 3.867 12 C -0.111 4.111 13 C 0.182 3.818 14 N -0.627 5.627 15 C -0.242 4.242 16 H 0.075 0.925 17 C -0.062 4.062 18 N -0.946 5.946 19 Si 0.972 3.028 20 H -0.284 1.284 21 H -0.295 1.295 22 H -0.272 1.272 23 C 0.161 3.839 24 C -0.079 4.079 25 C -0.126 4.126 26 C -0.130 4.130 27 C -0.123 4.123 28 C -0.119 4.119 29 C -0.110 4.110 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.002 0.998 44 H 0.013 0.987 45 H 0.247 0.753 46 H 0.041 0.959 47 H 0.024 0.976 48 H 0.101 0.899 49 H 0.130 0.870 50 H 0.143 0.857 51 H 0.149 0.851 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.853 -13.721 -5.647 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 C -0.205 4.205 4 C -0.069 4.069 5 H 0.132 0.868 6 C 0.331 3.669 7 O -0.468 6.468 8 N -0.374 5.374 9 C 0.000 4.000 10 C -0.097 4.097 11 C 0.011 3.989 12 C -0.150 4.150 13 C 0.058 3.942 14 N -0.353 5.353 15 C -0.371 4.371 16 H 0.093 0.907 17 C -0.255 4.255 18 N -0.594 5.594 19 Si 0.801 3.199 20 H -0.211 1.211 21 H -0.222 1.222 22 H -0.197 1.197 23 C 0.036 3.964 24 C -0.079 4.079 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.141 4.141 28 C -0.137 4.137 29 C -0.128 4.128 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.021 0.979 44 H 0.031 0.969 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.042 0.958 48 H 0.119 0.881 49 H 0.148 0.852 50 H 0.161 0.839 51 H 0.167 0.833 52 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.485 -13.667 -6.327 27.063 hybrid contribution 1.599 1.149 -0.310 1.993 sum -20.886 -12.518 -6.636 25.238 Atomic orbital electron populations 1.21766 0.92370 1.02240 1.02878 1.20954 0.97283 0.95324 0.95660 1.21856 0.99732 0.96035 1.02909 1.20340 0.88921 0.95358 1.02269 0.86753 1.20716 0.90151 0.74280 0.81786 1.90646 1.72559 1.52291 1.31324 1.50340 1.08572 1.72019 1.06519 1.22910 0.83331 1.00114 0.93657 1.22292 0.96968 0.95788 0.94673 1.23221 0.96803 1.01944 0.76888 1.22507 0.97561 0.98258 0.96652 1.21010 0.93609 0.85418 0.94205 1.44842 1.18839 1.11510 1.60132 1.19363 1.05716 0.91231 1.20827 0.90692 1.25590 0.98787 1.01210 0.99931 1.70186 1.20709 1.31494 1.37042 0.85151 0.76920 0.79921 0.77920 1.21122 1.22201 1.19702 1.21159 0.87922 0.91713 0.95562 1.19370 0.99200 0.93415 0.95945 1.21105 1.00044 0.94702 0.98595 1.21332 0.98263 0.95519 0.99637 1.21490 0.97888 1.00817 0.93892 1.21474 0.99776 0.93239 0.99184 1.21314 0.96839 0.97185 0.97465 0.91178 0.91768 0.92442 0.92199 0.95502 0.91129 0.91545 0.93358 0.88576 0.86308 0.87392 0.89569 0.88967 0.97931 0.96924 0.94386 0.94149 0.95809 0.88051 0.85221 0.83928 0.83295 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.91 71.98 0.64 -1.48 16 2 C -0.07 -1.58 1.99 -10.79 -0.02 -1.60 16 3 C -0.15 -3.40 8.86 71.98 0.64 -2.76 16 4 C -0.05 -1.04 1.81 -12.28 -0.02 -1.06 16 5 H 0.11 1.98 7.30 -2.39 -0.02 1.96 16 6 C 0.54 16.24 5.83 87.66 0.51 16.75 16 7 O -0.59 -22.70 16.01 -3.04 -0.05 -22.75 16 8 N -0.64 -18.07 3.62 -863.60 -3.12 -21.19 16 9 C 0.12 3.96 8.15 85.90 0.70 4.66 16 10 C -0.10 -2.88 0.99 -52.16 -0.05 -2.93 16 11 C 0.13 2.77 7.80 85.90 0.67 3.44 16 12 C -0.11 -3.51 6.36 31.36 0.20 -3.31 16 13 C 0.18 8.64 5.40 86.80 0.47 9.11 16 14 N -0.63 -31.67 3.41 -693.35 -2.36 -34.04 16 15 C -0.24 -13.70 10.26 84.03 0.86 -12.84 16 16 H 0.08 4.14 7.84 -2.91 -0.02 4.11 16 17 C -0.06 -3.54 5.48 84.86 0.46 -3.07 16 18 N -0.95 -56.79 10.36 21.65 0.22 -56.56 16 19 Si 0.97 46.27 29.56 68.60 2.03 48.30 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 C 0.16 6.29 6.63 86.28 0.57 6.86 16 24 C -0.08 -1.55 3.40 -19.87 -0.07 -1.62 16 25 C -0.13 -2.81 8.84 22.27 0.20 -2.62 16 26 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 27 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 28 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 29 C -0.11 -1.60 9.67 22.27 0.22 -1.39 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.92 7.15 -2.39 -0.02 0.90 16 33 H 0.06 1.56 7.09 -2.39 -0.02 1.54 16 34 H 0.03 0.78 7.13 -2.39 -0.02 0.77 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.90 8.12 -2.39 -0.02 1.88 16 38 H 0.10 2.80 8.04 -2.38 -0.02 2.78 16 39 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.11 1.75 7.84 -2.39 -0.02 1.73 16 41 H 0.09 2.37 7.99 -2.38 -0.02 2.36 16 42 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.00 0.13 7.56 -2.38 -0.02 0.11 16 44 H 0.01 0.67 7.35 -2.39 -0.02 0.65 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 46 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 48 H 0.10 2.71 7.17 -2.91 -0.02 2.68 16 49 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 50 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 51 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 52 H 0.15 1.41 7.95 -2.91 -0.02 1.39 16 Total: -1.00 -74.94 410.88 4.24 -70.70 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.88 Total: 14.31 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 6.65 Total: 1.24 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -5.26 Total: -111.79 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -74.94 4.24 -70.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073016178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.023 kcal (2) G-P(sol) polarization free energy of solvation -74.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds