Wall clock time and date at job start Wed Apr 1 2020 01:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47258 * 2 1 4 4 C 1.52996 * 109.47263 * 120.00279 * 2 1 3 5 5 H 1.08998 * 109.47206 * 302.14771 * 4 2 1 6 6 C 1.50703 * 109.47372 * 62.14995 * 4 2 1 7 7 O 1.21273 * 120.00055 * 33.94818 * 6 4 2 8 8 N 1.34771 * 119.99702 * 213.95585 * 6 4 2 9 9 C 1.47394 * 135.85229 * 174.85417 * 8 6 4 10 10 C 1.51783 * 87.59697 * 205.59124 * 9 8 6 11 11 C 1.47393 * 135.85499 * 354.79689 * 8 6 4 12 12 C 1.53509 * 117.00047 * 92.95998 * 10 9 8 13 13 C 1.54635 * 102.70462 * 164.16390 * 12 10 9 14 14 N 1.47147 * 107.37471 * 339.38594 * 13 12 10 15 15 C 1.36937 * 125.57969 * 179.06341 * 14 13 12 16 16 H 1.07995 * 120.00102 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00091 * 0.03035 * 15 14 13 18 18 N 1.31619 * 120.00024 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00398 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46961 * 59.99644 * 19 17 15 21 21 H 1.48497 * 109.47710 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47064 * 300.00095 * 19 17 15 23 23 C 1.47755 * 108.84305 * 359.08773 * 14 13 12 24 24 C 1.50702 * 109.46889 * 182.14755 * 4 2 1 25 25 C 1.38237 * 120.00136 * 299.72039 * 24 4 2 26 26 C 1.38233 * 120.00122 * 179.78729 * 25 24 4 27 27 C 1.38237 * 119.99860 * 0.44755 * 26 25 24 28 28 C 1.38239 * 120.00116 * 359.81013 * 27 26 25 29 29 C 1.38228 * 119.99814 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47300 * 294.67195 * 1 2 3 31 31 H 1.08999 * 109.47323 * 54.67490 * 1 2 3 32 32 H 1.09007 * 109.47266 * 174.67823 * 1 2 3 33 33 H 1.09003 * 109.46944 * 239.99938 * 2 1 3 34 34 H 1.09008 * 109.46865 * 300.00336 * 3 2 1 35 35 H 1.09003 * 109.47193 * 60.00091 * 3 2 1 36 36 H 1.09000 * 109.47509 * 180.02562 * 3 2 1 37 37 H 1.09005 * 113.54013 * 320.28287 * 9 8 6 38 38 H 1.09000 * 113.54787 * 90.89220 * 9 8 6 39 39 H 1.08995 * 113.54463 * 269.02897 * 11 8 6 40 40 H 1.08994 * 113.54373 * 39.64535 * 11 8 6 41 41 H 1.08998 * 110.76583 * 282.46615 * 12 10 9 42 42 H 1.08996 * 110.76592 * 45.86197 * 12 10 9 43 43 H 1.08997 * 109.86569 * 98.83193 * 13 12 10 44 44 H 1.08999 * 109.86714 * 219.93952 * 13 12 10 45 45 H 0.97002 * 120.00311 * 179.97438 * 18 17 15 46 46 H 1.09002 * 110.40623 * 263.50894 * 23 14 13 47 47 H 1.08995 * 110.41207 * 141.07666 * 23 14 13 48 48 H 1.07997 * 119.99831 * 0.02562 * 25 24 4 49 49 H 1.08002 * 120.00344 * 180.27981 * 26 25 24 50 50 H 1.08004 * 120.00096 * 179.82898 * 27 26 25 51 51 H 1.07999 * 119.99800 * 180.02562 * 28 27 26 52 52 H 1.08001 * 120.00080 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6455 -0.2302 2.1387 6 6 1.5817 -2.1567 1.2228 7 8 1.4844 -2.7429 0.1656 8 7 1.2797 -2.7889 2.3741 9 6 0.7286 -4.1045 2.7452 10 6 0.2332 -3.4637 4.0288 11 6 1.3579 -2.4658 3.8101 12 6 -1.1991 -2.9113 4.0244 13 6 -1.4992 -2.7323 5.5308 14 7 -0.5627 -3.5929 6.2707 15 6 -0.4918 -3.7064 7.6335 16 1 0.2337 -4.3680 8.0833 17 6 -1.3525 -2.9712 8.4369 18 7 -2.2365 -2.1646 7.8887 19 14 -1.2564 -3.1264 10.2959 20 1 0.0966 -2.7236 10.7569 21 1 -2.2746 -2.2436 10.9197 22 1 -1.5143 -4.5350 10.6889 23 6 0.2892 -4.3142 5.3026 24 6 3.5460 -0.6753 1.2760 25 6 4.2734 -1.2442 0.2473 26 6 5.6548 -1.1982 0.2697 27 6 6.3090 -0.5913 1.3254 28 6 5.5818 -0.0270 2.3568 29 6 4.2004 -0.0692 2.3322 30 1 -0.3634 0.4290 0.9339 31 1 -0.3634 0.5942 -0.8384 32 1 -0.3634 -1.0233 -0.0953 33 1 1.8932 -0.5139 -0.8900 34 1 1.6765 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 -0.0739 -4.4412 2.0888 38 1 1.4912 -4.8667 2.9052 39 1 2.2987 -2.7637 4.2728 40 1 1.0808 -1.4372 4.0406 41 1 -1.2424 -1.9538 3.5054 42 1 -1.8879 -3.6269 3.5756 43 1 -1.3504 -1.6912 5.8169 44 1 -2.5251 -3.0336 5.7424 45 1 -2.8382 -1.6511 8.4501 46 1 -0.1110 -5.3101 5.1123 47 1 1.3128 -4.3792 5.6714 48 1 3.7623 -1.7213 -0.5758 49 1 6.2230 -1.6387 -0.5362 50 1 7.3884 -0.5577 1.3444 51 1 6.0930 0.4475 3.1814 52 1 3.6322 0.3713 3.1381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073016179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:23 Heat of formation + Delta-G solvation = 44.671839 kcal Electronic energy + Delta-G solvation = -30853.037569 eV Core-core repulsion = 27012.009868 eV Total energy + Delta-G solvation = -3841.027701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.93284 -39.77601 -38.23760 -35.95717 -35.53069 -32.27981 -31.71196 -31.02393 -29.69537 -28.85593 -27.46668 -26.97518 -25.97637 -25.45547 -23.66218 -22.84706 -21.91131 -20.56032 -20.26605 -19.00680 -18.27765 -17.12377 -17.02466 -16.64871 -15.96335 -15.74436 -15.20217 -14.94678 -14.82287 -14.46302 -14.38091 -14.07540 -13.81399 -13.59490 -13.42387 -13.00542 -12.66949 -12.63004 -12.55940 -12.41078 -12.23067 -12.17694 -11.94460 -11.83196 -11.63348 -11.28183 -11.15480 -11.02984 -10.93458 -10.85699 -10.72612 -10.65238 -10.42415 -10.19481 -10.15232 -9.87265 -9.69461 -9.59154 -9.05473 -8.78389 -8.62199 -8.52702 -6.86529 -5.73758 -3.07471 1.15635 1.26822 2.70842 2.93154 3.38780 3.43470 3.44469 3.63203 4.36945 4.46682 4.49559 4.62693 4.68050 4.79706 4.86690 4.93414 4.98002 5.00693 5.18401 5.24265 5.28354 5.39045 5.46868 5.46989 5.52505 5.55840 5.58763 5.65177 5.69103 5.73423 5.76796 5.78987 5.82111 5.85428 5.90866 5.93071 6.02209 6.16864 6.20579 6.21033 6.23946 6.32179 6.37486 6.44128 6.47619 6.50399 6.64867 6.69102 6.84453 7.52606 7.58693 7.79370 7.87218 8.22105 8.25341 9.19035 9.79045 10.44654 11.37710 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.002919 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.142054 B = 9589.779437 C =10210.488344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.074 4.074 3 C -0.145 4.145 4 C -0.058 4.058 5 H 0.096 0.904 6 C 0.554 3.446 7 O -0.546 6.546 8 N -0.640 5.640 9 C 0.119 3.881 10 C -0.105 4.105 11 C 0.122 3.878 12 C -0.117 4.117 13 C 0.180 3.820 14 N -0.604 5.604 15 C -0.229 4.229 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.154 3.846 24 C -0.069 4.069 25 C -0.106 4.106 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.109 4.109 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.253 0.747 46 H 0.026 0.974 47 H 0.042 0.958 48 H 0.127 0.873 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.123 0.877 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.236 5.452 -15.279 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.093 4.093 3 C -0.203 4.203 4 C -0.079 4.079 5 H 0.114 0.886 6 C 0.344 3.656 7 O -0.424 6.424 8 N -0.375 5.375 9 C -0.004 4.004 10 C -0.107 4.107 11 C -0.001 4.001 12 C -0.155 4.155 13 C 0.056 3.944 14 N -0.331 5.331 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.027 3.973 24 C -0.070 4.070 25 C -0.124 4.124 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.127 4.127 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.144 0.856 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.141 0.859 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.106 5.359 -15.849 20.651 hybrid contribution 0.075 -0.081 1.151 1.156 sum 12.181 5.278 -14.698 19.806 Atomic orbital electron populations 1.21885 0.94581 1.02449 1.01912 1.20978 0.96087 0.95780 0.96451 1.21849 1.01273 0.95269 1.01879 1.20351 0.92686 0.93339 1.01551 0.88616 1.19865 0.76038 0.87788 0.81953 1.90655 1.54047 1.68058 1.29672 1.49846 1.63429 1.18313 1.05873 1.22758 0.97196 0.86452 0.94002 1.22157 0.96186 0.97081 0.95234 1.22835 0.98570 1.00726 0.77959 1.22468 0.92710 0.99663 1.00658 1.21217 0.93835 0.95380 0.84013 1.44530 1.38484 1.48805 1.01280 1.18999 1.15460 1.21338 0.79935 0.90467 1.24784 0.98330 0.99159 0.98049 1.69947 1.23190 1.30401 1.33398 0.86212 0.77148 0.77355 0.85106 1.21179 1.21633 1.21187 1.21132 0.95140 0.93666 0.87371 1.19400 0.93284 0.98978 0.95303 1.21138 0.94023 0.98645 0.98577 1.21132 0.94359 0.99732 0.98635 1.21166 0.99805 0.98560 0.94499 1.21124 0.93951 0.99954 0.98709 1.21099 0.94636 0.99332 0.97665 0.92547 0.92299 0.92172 0.89930 0.92440 0.92528 0.92387 0.90537 0.89970 0.89631 0.90278 0.92129 0.91848 0.93536 0.93832 0.93704 0.95591 0.93983 0.85555 0.86145 0.86224 0.85944 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.87 37.15 0.33 -1.37 16 2 C -0.07 -0.82 2.00 -90.63 -0.18 -1.00 16 3 C -0.15 -1.35 8.92 37.16 0.33 -1.02 16 4 C -0.06 -0.70 1.85 -92.92 -0.17 -0.87 16 5 H 0.10 1.11 7.39 -51.93 -0.38 0.73 16 6 C 0.55 8.26 5.83 -10.99 -0.06 8.19 16 7 O -0.55 -9.58 16.03 5.56 0.09 -9.49 16 8 N -0.64 -9.38 3.70 -185.42 -0.69 -10.07 16 9 C 0.12 1.71 8.03 -7.47 -0.06 1.65 16 10 C -0.10 -1.68 1.06 -155.28 -0.16 -1.85 16 11 C 0.12 1.76 7.61 -7.39 -0.06 1.70 16 12 C -0.12 -2.06 6.40 -25.61 -0.16 -2.23 16 13 C 0.18 4.14 5.39 -2.83 -0.02 4.13 16 14 N -0.60 -14.57 3.41 -170.53 -0.58 -15.15 16 15 C -0.23 -6.13 10.28 -15.06 -0.15 -6.28 16 16 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 18 N -0.92 -26.26 10.30 55.49 0.57 -25.69 16 19 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.15 2.91 6.71 -3.22 -0.02 2.89 16 24 C -0.07 -0.80 3.40 -104.62 -0.36 -1.16 16 25 C -0.11 -1.23 8.83 -39.58 -0.35 -1.58 16 26 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 27 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 28 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 29 C -0.11 -1.16 9.67 -39.58 -0.38 -1.54 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.79 7.12 -51.93 -0.37 0.42 16 33 H 0.08 1.00 7.12 -51.93 -0.37 0.63 16 34 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.55 7.15 -51.93 -0.37 0.18 16 37 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 40 H 0.08 1.14 7.88 -51.93 -0.41 0.73 16 41 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 44 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.04 0.77 8.01 -51.93 -0.42 0.35 16 48 H 0.13 1.57 7.15 -52.49 -0.38 1.19 16 49 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 50 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 51 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 52 H 0.12 1.18 7.95 -52.49 -0.42 0.76 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -30.74 410.99 -11.13 -41.87 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.92 Total: 1.17 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.77 Total: -5.33 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.70 Total: -50.91 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -30.74 -11.13 -41.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073016179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.540 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds