Wall clock time and date at job start Wed Apr 1 2020 01:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47258 * 2 1 4 4 C 1.52996 * 109.47263 * 120.00279 * 2 1 3 5 5 H 1.08998 * 109.47206 * 302.14771 * 4 2 1 6 6 C 1.50703 * 109.47372 * 62.14995 * 4 2 1 7 7 O 1.21273 * 120.00055 * 33.94818 * 6 4 2 8 8 N 1.34771 * 119.99702 * 213.95585 * 6 4 2 9 9 C 1.47394 * 135.85229 * 174.85417 * 8 6 4 10 10 C 1.51783 * 87.59697 * 205.59124 * 9 8 6 11 11 C 1.47393 * 135.85499 * 354.79689 * 8 6 4 12 12 C 1.53509 * 117.00047 * 92.95998 * 10 9 8 13 13 C 1.54635 * 102.70462 * 164.16390 * 12 10 9 14 14 N 1.47147 * 107.37471 * 339.38594 * 13 12 10 15 15 C 1.36937 * 125.57969 * 179.06341 * 14 13 12 16 16 H 1.07995 * 120.00102 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00091 * 0.03035 * 15 14 13 18 18 N 1.31619 * 120.00024 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00398 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46961 * 59.99644 * 19 17 15 21 21 H 1.48497 * 109.47710 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47064 * 300.00095 * 19 17 15 23 23 C 1.47755 * 108.84305 * 359.08773 * 14 13 12 24 24 C 1.50702 * 109.46889 * 182.14755 * 4 2 1 25 25 C 1.38237 * 120.00136 * 299.72039 * 24 4 2 26 26 C 1.38233 * 120.00122 * 179.78729 * 25 24 4 27 27 C 1.38237 * 119.99860 * 0.44755 * 26 25 24 28 28 C 1.38239 * 120.00116 * 359.81013 * 27 26 25 29 29 C 1.38228 * 119.99814 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47300 * 294.67195 * 1 2 3 31 31 H 1.08999 * 109.47323 * 54.67490 * 1 2 3 32 32 H 1.09007 * 109.47266 * 174.67823 * 1 2 3 33 33 H 1.09003 * 109.46944 * 239.99938 * 2 1 3 34 34 H 1.09008 * 109.46865 * 300.00336 * 3 2 1 35 35 H 1.09003 * 109.47193 * 60.00091 * 3 2 1 36 36 H 1.09000 * 109.47509 * 180.02562 * 3 2 1 37 37 H 1.09005 * 113.54013 * 320.28287 * 9 8 6 38 38 H 1.09000 * 113.54787 * 90.89220 * 9 8 6 39 39 H 1.08995 * 113.54463 * 269.02897 * 11 8 6 40 40 H 1.08994 * 113.54373 * 39.64535 * 11 8 6 41 41 H 1.08998 * 110.76583 * 282.46615 * 12 10 9 42 42 H 1.08996 * 110.76592 * 45.86197 * 12 10 9 43 43 H 1.08997 * 109.86569 * 98.83193 * 13 12 10 44 44 H 1.08999 * 109.86714 * 219.93952 * 13 12 10 45 45 H 0.97002 * 120.00311 * 179.97438 * 18 17 15 46 46 H 1.09002 * 110.40623 * 263.50894 * 23 14 13 47 47 H 1.08995 * 110.41207 * 141.07666 * 23 14 13 48 48 H 1.07997 * 119.99831 * 0.02562 * 25 24 4 49 49 H 1.08002 * 120.00344 * 180.27981 * 26 25 24 50 50 H 1.08004 * 120.00096 * 179.82898 * 27 26 25 51 51 H 1.07999 * 119.99800 * 180.02562 * 28 27 26 52 52 H 1.08001 * 120.00080 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6455 -0.2302 2.1387 6 6 1.5817 -2.1567 1.2228 7 8 1.4844 -2.7429 0.1656 8 7 1.2797 -2.7889 2.3741 9 6 0.7286 -4.1045 2.7452 10 6 0.2332 -3.4637 4.0288 11 6 1.3579 -2.4658 3.8101 12 6 -1.1991 -2.9113 4.0244 13 6 -1.4992 -2.7323 5.5308 14 7 -0.5627 -3.5929 6.2707 15 6 -0.4918 -3.7064 7.6335 16 1 0.2337 -4.3680 8.0833 17 6 -1.3525 -2.9712 8.4369 18 7 -2.2365 -2.1646 7.8887 19 14 -1.2564 -3.1264 10.2959 20 1 0.0966 -2.7236 10.7569 21 1 -2.2746 -2.2436 10.9197 22 1 -1.5143 -4.5350 10.6889 23 6 0.2892 -4.3142 5.3026 24 6 3.5460 -0.6753 1.2760 25 6 4.2734 -1.2442 0.2473 26 6 5.6548 -1.1982 0.2697 27 6 6.3090 -0.5913 1.3254 28 6 5.5818 -0.0270 2.3568 29 6 4.2004 -0.0692 2.3322 30 1 -0.3634 0.4290 0.9339 31 1 -0.3634 0.5942 -0.8384 32 1 -0.3634 -1.0233 -0.0953 33 1 1.8932 -0.5139 -0.8900 34 1 1.6765 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 -0.0739 -4.4412 2.0888 38 1 1.4912 -4.8667 2.9052 39 1 2.2987 -2.7637 4.2728 40 1 1.0808 -1.4372 4.0406 41 1 -1.2424 -1.9538 3.5054 42 1 -1.8879 -3.6269 3.5756 43 1 -1.3504 -1.6912 5.8169 44 1 -2.5251 -3.0336 5.7424 45 1 -2.8382 -1.6511 8.4501 46 1 -0.1110 -5.3101 5.1123 47 1 1.3128 -4.3792 5.6714 48 1 3.7623 -1.7213 -0.5758 49 1 6.2230 -1.6387 -0.5362 50 1 7.3884 -0.5577 1.3444 51 1 6.0930 0.4475 3.1814 52 1 3.6322 0.3713 3.1381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073016179.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:22 Heat of formation + Delta-G solvation = 29.840041 kcal Electronic energy + Delta-G solvation = -30853.680724 eV Core-core repulsion = 27012.009868 eV Total energy + Delta-G solvation = -3841.670856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.11124 -40.80628 -39.31294 -37.38246 -36.68543 -34.08806 -32.61366 -31.78718 -31.26183 -30.37445 -28.54077 -27.88533 -27.23054 -26.92671 -25.32049 -23.62676 -22.71375 -22.13344 -21.51861 -20.16162 -19.59792 -18.57794 -18.06516 -17.93221 -17.18663 -16.73011 -16.67945 -16.19144 -15.96499 -15.78738 -15.58752 -15.30153 -15.01039 -14.64456 -14.28765 -14.17355 -13.99207 -13.84655 -13.66180 -13.51648 -13.42331 -13.33695 -13.28004 -13.00861 -12.87280 -12.71120 -12.43761 -12.25918 -12.11045 -12.05720 -11.97139 -11.91091 -11.81284 -11.71102 -11.63187 -11.55387 -11.22036 -10.81547 -10.64561 -9.82957 -9.73470 -9.61203 -8.83972 -7.79795 -5.14544 0.36884 0.49242 1.50199 1.52423 1.57441 1.58573 1.79604 2.53655 2.84006 3.23011 3.37845 3.48468 3.57449 3.64436 3.76117 3.82880 3.97395 4.07792 4.11686 4.15703 4.21950 4.26311 4.34285 4.41440 4.44609 4.55256 4.59736 4.62123 4.64737 4.69491 4.71796 4.75122 4.78677 4.84939 4.91745 4.96064 4.97279 5.04081 5.08709 5.15599 5.17005 5.19467 5.20390 5.34572 5.40201 5.51525 5.56836 5.62228 5.66994 5.69781 5.81688 6.09269 6.23898 6.69962 7.09086 7.15283 7.82516 8.46831 9.30312 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.002919 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.142054 B = 9589.779437 C =10210.488344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.052 4.052 5 H 0.101 0.899 6 C 0.552 3.448 7 O -0.576 6.576 8 N -0.642 5.642 9 C 0.123 3.877 10 C -0.098 4.098 11 C 0.128 3.872 12 C -0.101 4.101 13 C 0.191 3.809 14 N -0.625 5.625 15 C -0.238 4.238 16 H 0.085 0.915 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.974 3.026 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.280 1.280 23 C 0.152 3.848 24 C -0.079 4.079 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.122 4.122 29 C -0.117 4.117 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.015 0.985 44 H 0.004 0.996 45 H 0.245 0.755 46 H 0.032 0.968 47 H 0.055 0.945 48 H 0.110 0.890 49 H 0.137 0.863 50 H 0.145 0.855 51 H 0.144 0.856 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.532 5.729 -15.395 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.195 4.195 4 C -0.073 4.073 5 H 0.119 0.881 6 C 0.343 3.657 7 O -0.457 6.457 8 N -0.375 5.375 9 C 0.001 3.999 10 C -0.099 4.099 11 C 0.006 3.994 12 C -0.140 4.140 13 C 0.066 3.934 14 N -0.351 5.351 15 C -0.367 4.367 16 H 0.103 0.897 17 C -0.258 4.258 18 N -0.601 5.601 19 Si 0.803 3.197 20 H -0.201 1.201 21 H -0.225 1.225 22 H -0.206 1.206 23 C 0.027 3.973 24 C -0.079 4.079 25 C -0.141 4.141 26 C -0.144 4.144 27 C -0.140 4.140 28 C -0.140 4.140 29 C -0.135 4.135 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.033 0.967 44 H 0.022 0.978 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.073 0.927 48 H 0.128 0.872 49 H 0.154 0.846 50 H 0.163 0.837 51 H 0.162 0.838 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.432 5.613 -15.978 22.250 hybrid contribution -0.604 -0.220 1.157 1.323 sum 13.828 5.393 -14.821 20.975 Atomic orbital electron populations 1.21859 0.94745 1.01188 1.02734 1.20955 0.95867 0.96748 0.95476 1.21780 1.01075 0.93920 1.02717 1.20347 0.93413 0.91432 1.02121 0.88086 1.20361 0.75289 0.88686 0.81356 1.90637 1.55369 1.68970 1.30686 1.49869 1.63293 1.18430 1.05957 1.22760 0.97727 0.86823 0.92597 1.21961 0.95577 0.97511 0.94870 1.22829 0.98417 1.00391 0.77782 1.22262 0.94230 1.00743 0.96724 1.20910 0.91805 0.93353 0.87321 1.44807 1.39478 1.49393 1.01424 1.19417 1.15013 1.20693 0.81548 0.89716 1.25580 0.98526 0.99497 1.02184 1.70171 1.24057 1.31468 1.34361 0.85213 0.77102 0.77166 0.80215 1.20136 1.22456 1.20593 1.21283 0.94813 0.93775 0.87463 1.19370 0.92723 0.99938 0.95917 1.21128 0.94907 0.99521 0.98497 1.21373 0.93838 0.99661 0.99493 1.21494 1.01164 0.97526 0.93819 1.21441 0.93669 0.99498 0.99342 1.21268 0.95355 0.99357 0.97545 0.92190 0.90859 0.94543 0.91373 0.91341 0.91918 0.92583 0.90447 0.88066 0.88197 0.90142 0.90960 0.91012 0.96718 0.97814 0.94572 0.94975 0.92698 0.87151 0.84558 0.83743 0.83840 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.87 71.98 0.64 -2.61 16 2 C -0.07 -1.55 2.00 -10.80 -0.02 -1.57 16 3 C -0.14 -2.36 8.92 71.98 0.64 -1.72 16 4 C -0.05 -1.22 1.85 -12.29 -0.02 -1.24 16 5 H 0.10 2.22 7.39 -2.39 -0.02 2.20 16 6 C 0.55 16.07 5.83 87.66 0.51 16.58 16 7 O -0.58 -20.23 16.03 -3.01 -0.05 -20.27 16 8 N -0.64 -17.83 3.70 -858.92 -3.18 -21.01 16 9 C 0.12 3.30 8.03 83.67 0.67 3.98 16 10 C -0.10 -2.98 1.06 -52.66 -0.06 -3.04 16 11 C 0.13 3.46 7.61 83.72 0.64 4.10 16 12 C -0.10 -3.54 6.40 31.32 0.20 -3.34 16 13 C 0.19 9.03 5.39 86.81 0.47 9.49 16 14 N -0.62 -30.17 3.41 -693.45 -2.36 -32.53 16 15 C -0.24 -12.72 10.28 84.03 0.86 -11.86 16 16 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 17 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 18 N -0.95 -55.87 10.30 21.65 0.22 -55.64 16 19 Si 0.97 44.53 29.55 68.60 2.03 46.56 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 C 0.15 5.55 6.71 86.23 0.58 6.13 16 24 C -0.08 -1.74 3.40 -19.86 -0.07 -1.81 16 25 C -0.12 -2.77 8.83 22.27 0.20 -2.57 16 26 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 27 C -0.12 -1.96 10.05 22.27 0.22 -1.73 16 28 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 29 C -0.12 -2.25 9.67 22.27 0.22 -2.03 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 0.96 7.12 -2.38 -0.02 0.94 16 33 H 0.07 1.68 7.12 -2.39 -0.02 1.66 16 34 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 0.99 7.15 -2.39 -0.02 0.97 16 37 H 0.08 2.09 8.13 -2.38 -0.02 2.07 16 38 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.10 2.47 8.07 -2.39 -0.02 2.45 16 40 H 0.08 2.18 7.88 -2.39 -0.02 2.16 16 41 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.01 0.77 7.38 -2.39 -0.02 0.76 16 44 H 0.00 0.20 7.49 -2.39 -0.02 0.18 16 45 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.87 8.01 -2.39 -0.02 1.86 16 48 H 0.11 2.80 7.15 -2.91 -0.02 2.78 16 49 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 50 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 51 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 52 H 0.13 2.23 7.95 -2.91 -0.02 2.21 16 Total: -1.00 -67.67 410.99 4.13 -63.54 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.88 Total: 19.60 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.59 Total: -0.24 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -5.32 Total: -109.19 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.05 Total: -20.27 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -67.67 4.13 -63.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073016179.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.385 kcal (2) G-P(sol) polarization free energy of solvation -67.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds