Wall clock time and date at job start Wed Apr 1 2020 02:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46823 * 2 1 4 4 H 1.09004 * 109.47380 * 174.84190 * 3 2 1 5 5 C 1.53001 * 109.47162 * 294.84165 * 3 2 1 6 6 C 1.50699 * 109.46920 * 293.86891 * 5 3 2 7 7 C 1.38235 * 120.00233 * 275.68845 * 6 5 3 8 8 C 1.38229 * 120.00014 * 179.76911 * 7 6 5 9 9 C 1.38231 * 119.99996 * 0.50782 * 8 7 6 10 10 C 1.38234 * 120.00188 * 359.74495 * 9 8 7 11 11 C 1.38233 * 119.99939 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47433 * 54.84270 * 3 2 1 13 13 O 1.21290 * 120.00068 * 249.29936 * 12 3 2 14 14 N 1.34780 * 120.00315 * 69.29708 * 12 3 2 15 15 C 1.47887 * 134.34586 * 174.46265 * 14 12 3 16 16 C 1.52378 * 85.58957 * 156.51018 * 15 14 12 17 17 C 1.47891 * 134.33553 * 354.46051 * 14 12 3 18 18 C 1.53659 * 116.38305 * 141.35781 * 16 15 14 19 19 C 1.54598 * 102.72947 * 95.49273 * 18 16 15 20 20 N 1.47132 * 107.36706 * 20.74856 * 19 18 16 21 21 C 1.36941 * 125.58712 * 180.66779 * 20 19 18 22 22 H 1.08005 * 119.99754 * 180.02562 * 21 20 19 23 23 C 1.38812 * 120.00243 * 0.02562 * 21 20 19 24 24 N 1.31620 * 119.99702 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00240 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47193 * 60.00124 * 25 23 21 27 27 H 1.48503 * 109.47150 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47198 * 299.99938 * 25 23 21 29 29 C 1.47725 * 108.82741 * 0.93107 * 20 19 18 30 30 H 1.08998 * 109.46228 * 184.90144 * 1 2 3 31 31 H 1.08995 * 109.46925 * 304.89963 * 1 2 3 32 32 H 1.08993 * 109.46555 * 64.90266 * 1 2 3 33 33 H 1.08994 * 109.47201 * 240.00196 * 2 1 3 34 34 H 1.09001 * 109.47003 * 119.98971 * 2 1 3 35 35 H 1.09000 * 109.46895 * 53.86689 * 5 3 2 36 36 H 1.09003 * 109.47168 * 173.86490 * 5 3 2 37 37 H 1.08002 * 119.99621 * 0.02562 * 7 6 5 38 38 H 1.08005 * 120.00205 * 180.23544 * 8 7 6 39 39 H 1.08005 * 119.99989 * 179.73107 * 9 8 7 40 40 H 1.08003 * 120.00084 * 179.97438 * 10 9 8 41 41 H 1.07995 * 120.00426 * 179.97438 * 11 10 9 42 42 H 1.09006 * 113.84936 * 42.34780 * 15 14 12 43 43 H 1.08990 * 113.97128 * 270.69398 * 15 14 12 44 44 H 1.08995 * 113.85060 * 89.32827 * 17 14 12 45 45 H 1.08997 * 113.85641 * 317.64909 * 17 14 12 46 46 H 1.08995 * 110.76245 * 337.17619 * 18 16 15 47 47 H 1.09005 * 110.75147 * 213.79932 * 18 16 15 48 48 H 1.09000 * 109.86408 * 261.30786 * 19 18 16 49 49 H 1.09000 * 109.98009 * 140.25977 * 19 18 16 50 50 H 0.96996 * 120.00059 * 179.97438 * 24 23 21 51 51 H 1.09001 * 110.40108 * 96.33235 * 29 20 19 52 52 H 1.08999 * 110.40034 * 218.74766 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4440 0.0924 5 6 1.6386 2.1253 -1.3090 6 6 2.3619 1.4723 -2.4585 7 6 3.6454 1.8701 -2.7831 8 6 4.3106 1.2678 -3.8345 9 6 3.6886 0.2749 -4.5680 10 6 2.4031 -0.1193 -4.2468 11 6 1.7396 0.4797 -3.1924 12 6 1.4361 2.1889 1.1616 13 8 0.6195 3.0632 0.9621 14 7 1.8033 1.8848 2.4223 15 6 1.5073 2.4596 3.7523 16 6 1.8545 1.0791 4.2959 17 6 2.6626 0.8433 3.0257 18 6 2.6351 1.0427 5.6189 19 6 1.5157 0.8654 6.6703 20 7 0.3410 0.3186 5.9731 21 6 -0.8662 0.0301 6.5515 22 1 -1.6703 -0.3704 5.9519 23 6 -1.0565 0.2525 7.9085 24 7 -0.0764 0.7401 8.6392 25 14 -2.7031 -0.1418 8.6976 26 1 -3.0013 -1.5862 8.5256 27 1 -2.6487 0.1839 10.1455 28 1 -3.7684 0.6643 8.0492 29 6 0.6793 0.1259 4.5481 30 1 -0.3632 -1.0239 0.0878 31 1 -0.3633 0.5879 0.8428 32 1 -0.3632 0.4359 -0.9306 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 0.5627 2.0281 -1.4545 36 1 1.9053 3.1813 -1.2647 37 1 4.1299 2.6487 -2.2125 38 1 5.3149 1.5760 -4.0857 39 1 4.2067 -0.1927 -5.3922 40 1 1.9169 -0.8947 -4.8201 41 1 0.7352 0.1721 -2.9416 42 1 0.4622 2.7374 3.8897 43 1 2.2006 3.2420 4.0608 44 1 3.7105 1.1310 3.1103 45 1 2.5244 -0.1475 2.5930 46 1 3.1698 1.9791 5.7779 47 1 3.3217 0.1963 5.6391 48 1 1.2676 1.8298 7.1134 49 1 1.8406 0.1733 7.4472 50 1 -0.2095 0.8958 9.5873 51 1 0.9808 -0.9055 4.3652 52 1 -0.1683 0.3926 3.9169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073026531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:48 Heat of formation + Delta-G solvation = 41.438470 kcal Electronic energy + Delta-G solvation = -30308.880944 eV Core-core repulsion = 26467.713033 eV Total energy + Delta-G solvation = -3841.167911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.76530 -39.71188 -38.45589 -35.68385 -35.48900 -32.30488 -31.96108 -31.12852 -29.73863 -28.94091 -28.15329 -26.43841 -25.83871 -24.83465 -23.64719 -22.83519 -22.34733 -20.82748 -20.24942 -18.68569 -18.25651 -17.16414 -16.88774 -16.40511 -16.04861 -15.90417 -15.38843 -15.24755 -14.80116 -14.58343 -14.45776 -14.03904 -13.72097 -13.59911 -13.37456 -13.21349 -12.89184 -12.79860 -12.54262 -12.43908 -12.24852 -12.13310 -11.86373 -11.74280 -11.44260 -11.30299 -11.21287 -11.08239 -10.93186 -10.90461 -10.75752 -10.67719 -10.38915 -10.16201 -10.11133 -9.85254 -9.66825 -9.39537 -9.14819 -8.90050 -8.59566 -8.47793 -6.84189 -5.71444 -3.04820 1.10328 1.15447 2.77480 2.94232 3.41342 3.45759 3.46624 3.54683 4.28777 4.47386 4.55964 4.67794 4.68641 4.72879 4.78668 4.80719 4.91072 5.01117 5.06072 5.23488 5.24239 5.28319 5.30661 5.42636 5.47127 5.51188 5.54995 5.57244 5.69521 5.70158 5.74499 5.77551 5.82071 5.86432 5.96219 6.01393 6.06484 6.10033 6.17967 6.21476 6.22811 6.26336 6.31090 6.43834 6.47045 6.51458 6.67054 6.71619 6.76722 7.54965 7.60162 7.81985 7.89362 8.25175 8.30656 9.21913 9.81627 10.46932 11.40149 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.002303 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.443627 B =12153.616188 C =12608.492813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.095 4.095 4 H 0.091 0.909 5 C -0.065 4.065 6 C -0.074 4.074 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.119 4.119 11 C -0.114 4.114 12 C 0.541 3.459 13 O -0.546 6.546 14 N -0.639 5.639 15 C 0.129 3.871 16 C -0.103 4.103 17 C 0.112 3.888 18 C -0.132 4.132 19 C 0.178 3.822 20 N -0.604 5.604 21 C -0.227 4.227 22 H 0.076 0.924 23 C -0.008 4.008 24 N -0.922 5.922 25 Si 0.912 3.088 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.163 3.837 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.046 0.954 49 H 0.044 0.956 50 H 0.253 0.747 51 H 0.023 0.977 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.125 -0.884 -22.771 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.116 4.116 4 H 0.109 0.891 5 C -0.103 4.103 6 C -0.074 4.074 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.137 4.137 11 C -0.132 4.132 12 C 0.330 3.670 13 O -0.424 6.424 14 N -0.374 5.374 15 C 0.007 3.993 16 C -0.105 4.105 17 C -0.011 4.011 18 C -0.171 4.171 19 C 0.054 3.946 20 N -0.331 5.331 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.204 4.204 24 N -0.570 5.570 25 Si 0.742 3.258 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.037 3.963 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.041 0.959 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.512 -0.344 -22.848 25.153 hybrid contribution -0.672 -0.214 0.496 0.863 sum 9.840 -0.558 -22.352 24.428 Atomic orbital electron populations 1.21860 0.95118 1.01976 1.02377 1.21558 0.96908 0.93963 1.02964 1.21285 1.01195 0.96401 0.92749 0.89089 1.20465 1.00863 0.99115 0.89813 1.19912 0.94537 0.96363 0.96613 1.21079 0.94547 1.00238 0.97713 1.21132 0.99826 0.96798 0.95946 1.21134 0.95438 0.97960 1.00027 1.21155 0.95109 0.99950 0.97520 1.21128 1.00138 0.96357 0.95593 1.20173 0.81666 0.82761 0.82385 1.90696 1.33806 1.33549 1.84317 1.50205 1.48915 1.33374 1.04912 1.22936 1.02456 0.95924 0.77990 1.22463 0.97887 0.96299 0.93828 1.23144 0.95048 0.92054 0.90854 1.22675 0.98754 1.00808 0.94831 1.21203 0.83576 0.98830 0.91015 1.44539 1.10835 1.75458 1.02243 1.18991 0.88502 1.36329 0.91751 0.90582 1.24783 0.97924 1.01363 0.96306 1.69943 1.30629 1.50212 1.06206 0.86203 0.83210 0.78046 0.78333 1.21193 1.21610 1.21172 1.21020 0.93082 0.94338 0.87866 0.92379 0.92205 0.92506 0.90681 0.91198 0.89759 0.90356 0.86161 0.86230 0.86341 0.86186 0.85962 0.89672 0.90017 0.89736 0.89934 0.91783 0.91756 0.93565 0.93774 0.93719 0.95936 0.94224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.34 37.16 0.35 -1.42 16 2 C -0.12 -1.18 5.44 -26.73 -0.15 -1.32 16 3 C -0.10 -1.04 2.25 -91.77 -0.21 -1.25 16 4 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.07 -0.69 4.01 -27.88 -0.11 -0.80 16 6 C -0.07 -0.70 4.57 -104.62 -0.48 -1.18 16 7 C -0.12 -1.03 9.72 -39.59 -0.38 -1.42 16 8 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 9 C -0.13 -0.98 10.05 -39.59 -0.40 -1.37 16 10 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 11 C -0.11 -1.00 8.31 -39.58 -0.33 -1.33 16 12 C 0.54 7.97 5.69 -10.98 -0.06 7.91 16 13 O -0.55 -10.08 16.75 5.55 0.09 -9.99 16 14 N -0.64 -9.17 3.62 -186.90 -0.68 -9.85 16 15 C 0.13 2.05 8.15 -3.60 -0.03 2.02 16 16 C -0.10 -1.64 0.99 -154.84 -0.15 -1.79 16 17 C 0.11 1.36 7.71 -3.60 -0.03 1.33 16 18 C -0.13 -2.20 6.36 -25.55 -0.16 -2.36 16 19 C 0.18 4.12 5.39 -2.86 -0.02 4.11 16 20 N -0.60 -14.97 3.41 -170.51 -0.58 -15.56 16 21 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 22 H 0.08 2.05 7.83 -52.48 -0.41 1.63 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -26.72 10.30 55.49 0.57 -26.15 16 25 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 C 0.16 3.23 6.63 -3.17 -0.02 3.21 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.85 6.88 -51.93 -0.36 0.49 16 32 H 0.06 0.59 6.33 -51.93 -0.33 0.26 16 33 H 0.07 0.68 6.29 -51.93 -0.33 0.36 16 34 H 0.07 0.70 5.95 -51.93 -0.31 0.40 16 35 H 0.08 0.96 6.31 -51.93 -0.33 0.64 16 36 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.12 0.97 7.71 -52.49 -0.40 0.57 16 42 H 0.08 1.59 8.12 -51.93 -0.42 1.17 16 43 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.91 6.21 -51.93 -0.32 0.58 16 46 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.05 1.19 7.40 -51.93 -0.38 0.81 16 49 H 0.04 1.14 7.47 -51.93 -0.39 0.75 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 51 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 LS Contribution 405.30 15.07 6.11 6.11 Total: -1.00 -32.05 405.30 -11.32 -43.37 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.59 Total: 0.06 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.22 Total: -5.09 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.69 Total: -51.56 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.05 -11.32 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073026531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.810 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds