Wall clock time and date at job start Wed Apr 1 2020 02:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46823 * 2 1 4 4 H 1.09004 * 109.47380 * 174.84190 * 3 2 1 5 5 C 1.53001 * 109.47162 * 294.84165 * 3 2 1 6 6 C 1.50699 * 109.46920 * 293.86891 * 5 3 2 7 7 C 1.38235 * 120.00233 * 275.68845 * 6 5 3 8 8 C 1.38229 * 120.00014 * 179.76911 * 7 6 5 9 9 C 1.38231 * 119.99996 * 0.50782 * 8 7 6 10 10 C 1.38234 * 120.00188 * 359.74495 * 9 8 7 11 11 C 1.38233 * 119.99939 * 0.02562 * 10 9 8 12 12 C 1.50699 * 109.47433 * 54.84270 * 3 2 1 13 13 O 1.21290 * 120.00068 * 249.29936 * 12 3 2 14 14 N 1.34780 * 120.00315 * 69.29708 * 12 3 2 15 15 C 1.47887 * 134.34586 * 174.46265 * 14 12 3 16 16 C 1.52378 * 85.58957 * 156.51018 * 15 14 12 17 17 C 1.47891 * 134.33553 * 354.46051 * 14 12 3 18 18 C 1.53659 * 116.38305 * 141.35781 * 16 15 14 19 19 C 1.54598 * 102.72947 * 95.49273 * 18 16 15 20 20 N 1.47132 * 107.36706 * 20.74856 * 19 18 16 21 21 C 1.36941 * 125.58712 * 180.66779 * 20 19 18 22 22 H 1.08005 * 119.99754 * 180.02562 * 21 20 19 23 23 C 1.38812 * 120.00243 * 0.02562 * 21 20 19 24 24 N 1.31620 * 119.99702 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00240 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47193 * 60.00124 * 25 23 21 27 27 H 1.48503 * 109.47150 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47198 * 299.99938 * 25 23 21 29 29 C 1.47725 * 108.82741 * 0.93107 * 20 19 18 30 30 H 1.08998 * 109.46228 * 184.90144 * 1 2 3 31 31 H 1.08995 * 109.46925 * 304.89963 * 1 2 3 32 32 H 1.08993 * 109.46555 * 64.90266 * 1 2 3 33 33 H 1.08994 * 109.47201 * 240.00196 * 2 1 3 34 34 H 1.09001 * 109.47003 * 119.98971 * 2 1 3 35 35 H 1.09000 * 109.46895 * 53.86689 * 5 3 2 36 36 H 1.09003 * 109.47168 * 173.86490 * 5 3 2 37 37 H 1.08002 * 119.99621 * 0.02562 * 7 6 5 38 38 H 1.08005 * 120.00205 * 180.23544 * 8 7 6 39 39 H 1.08005 * 119.99989 * 179.73107 * 9 8 7 40 40 H 1.08003 * 120.00084 * 179.97438 * 10 9 8 41 41 H 1.07995 * 120.00426 * 179.97438 * 11 10 9 42 42 H 1.09006 * 113.84936 * 42.34780 * 15 14 12 43 43 H 1.08990 * 113.97128 * 270.69398 * 15 14 12 44 44 H 1.08995 * 113.85060 * 89.32827 * 17 14 12 45 45 H 1.08997 * 113.85641 * 317.64909 * 17 14 12 46 46 H 1.08995 * 110.76245 * 337.17619 * 18 16 15 47 47 H 1.09005 * 110.75147 * 213.79932 * 18 16 15 48 48 H 1.09000 * 109.86408 * 261.30786 * 19 18 16 49 49 H 1.09000 * 109.98009 * 140.25977 * 19 18 16 50 50 H 0.96996 * 120.00059 * 179.97438 * 24 23 21 51 51 H 1.09001 * 110.40108 * 96.33235 * 29 20 19 52 52 H 1.08999 * 110.40034 * 218.74766 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4440 0.0924 5 6 1.6386 2.1253 -1.3090 6 6 2.3619 1.4723 -2.4585 7 6 3.6454 1.8701 -2.7831 8 6 4.3106 1.2678 -3.8345 9 6 3.6886 0.2749 -4.5680 10 6 2.4031 -0.1193 -4.2468 11 6 1.7396 0.4797 -3.1924 12 6 1.4361 2.1889 1.1616 13 8 0.6195 3.0632 0.9621 14 7 1.8033 1.8848 2.4223 15 6 1.5073 2.4596 3.7523 16 6 1.8545 1.0791 4.2959 17 6 2.6626 0.8433 3.0257 18 6 2.6351 1.0427 5.6189 19 6 1.5157 0.8654 6.6703 20 7 0.3410 0.3186 5.9731 21 6 -0.8662 0.0301 6.5515 22 1 -1.6703 -0.3704 5.9519 23 6 -1.0565 0.2525 7.9085 24 7 -0.0764 0.7401 8.6392 25 14 -2.7031 -0.1418 8.6976 26 1 -3.0013 -1.5862 8.5256 27 1 -2.6487 0.1839 10.1455 28 1 -3.7684 0.6643 8.0492 29 6 0.6793 0.1259 4.5481 30 1 -0.3632 -1.0239 0.0878 31 1 -0.3633 0.5879 0.8428 32 1 -0.3632 0.4359 -0.9306 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 0.5627 2.0281 -1.4545 36 1 1.9053 3.1813 -1.2647 37 1 4.1299 2.6487 -2.2125 38 1 5.3149 1.5760 -4.0857 39 1 4.2067 -0.1927 -5.3922 40 1 1.9169 -0.8947 -4.8201 41 1 0.7352 0.1721 -2.9416 42 1 0.4622 2.7374 3.8897 43 1 2.2006 3.2420 4.0608 44 1 3.7105 1.1310 3.1103 45 1 2.5244 -0.1475 2.5930 46 1 3.1698 1.9791 5.7779 47 1 3.3217 0.1963 5.6391 48 1 1.2676 1.8298 7.1134 49 1 1.8406 0.1733 7.4472 50 1 -0.2095 0.8958 9.5873 51 1 0.9808 -0.9055 4.3652 52 1 -0.1683 0.3926 3.9169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073026531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:47 Heat of formation + Delta-G solvation = 24.452186 kcal Electronic energy + Delta-G solvation = -30309.617525 eV Core-core repulsion = 26467.713033 eV Total energy + Delta-G solvation = -3841.904491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.94627 -40.54692 -39.54725 -37.24767 -36.50639 -34.11133 -32.78143 -31.72589 -31.38354 -30.16050 -29.30925 -27.71511 -27.34085 -25.90760 -25.19257 -23.46235 -23.16612 -22.13159 -21.58753 -19.91983 -19.46645 -18.81704 -17.88826 -17.34546 -17.20693 -16.92340 -16.70171 -16.31451 -16.05161 -15.85153 -15.56675 -15.45992 -14.99197 -14.47788 -14.25675 -14.17688 -13.97547 -13.85647 -13.79884 -13.61847 -13.50349 -13.29474 -13.19691 -12.96339 -12.87146 -12.76807 -12.45603 -12.37897 -12.07605 -11.94754 -11.94058 -11.83016 -11.81196 -11.66409 -11.64397 -11.49868 -11.24227 -10.69142 -10.58492 -9.74336 -9.66584 -9.54070 -8.87771 -7.84899 -5.19371 0.48952 0.56637 1.43947 1.46800 1.52920 1.64724 1.82848 2.48454 2.93291 3.28688 3.32445 3.43279 3.65710 3.74889 3.81418 3.87385 4.04911 4.10796 4.14205 4.18813 4.22274 4.26103 4.36163 4.40888 4.45717 4.51365 4.54854 4.65563 4.67700 4.71124 4.73880 4.77921 4.83322 4.84293 4.97932 5.00323 5.03249 5.08410 5.12220 5.14722 5.18614 5.24256 5.25507 5.26471 5.40318 5.44713 5.64988 5.70059 5.73490 5.79406 5.81995 6.18712 6.21717 6.76940 7.12157 7.15566 7.78902 8.42065 9.24598 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.002303 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.443627 B =12153.616188 C =12608.492813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.084 4.084 4 H 0.114 0.886 5 C -0.058 4.058 6 C -0.084 4.084 7 C -0.127 4.127 8 C -0.124 4.124 9 C -0.131 4.131 10 C -0.125 4.125 11 C -0.124 4.124 12 C 0.536 3.464 13 O -0.593 6.593 14 N -0.640 5.640 15 C 0.122 3.878 16 C -0.097 4.097 17 C 0.131 3.869 18 C -0.111 4.111 19 C 0.183 3.817 20 N -0.627 5.627 21 C -0.242 4.242 22 H 0.074 0.926 23 C -0.064 4.064 24 N -0.947 5.947 25 Si 0.974 3.026 26 H -0.276 1.276 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.162 3.838 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.044 0.956 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.007 0.993 49 H 0.009 0.991 50 H 0.247 0.753 51 H 0.037 0.963 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.626 -2.291 -25.152 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.105 4.105 4 H 0.132 0.868 5 C -0.096 4.096 6 C -0.084 4.084 7 C -0.145 4.145 8 C -0.142 4.142 9 C -0.149 4.149 10 C -0.143 4.143 11 C -0.142 4.142 12 C 0.328 3.672 13 O -0.474 6.474 14 N -0.374 5.374 15 C 0.000 4.000 16 C -0.099 4.099 17 C 0.010 3.990 18 C -0.150 4.150 19 C 0.058 3.942 20 N -0.353 5.353 21 C -0.371 4.371 22 H 0.092 0.908 23 C -0.257 4.257 24 N -0.596 5.596 25 Si 0.802 3.198 26 H -0.202 1.202 27 H -0.218 1.218 28 H -0.209 1.209 29 C 0.037 3.963 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.063 0.937 43 H 0.122 0.878 44 H 0.144 0.856 45 H 0.121 0.879 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.025 0.975 49 H 0.027 0.973 50 H 0.056 0.944 51 H 0.055 0.945 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 13.038 -1.781 -25.259 28.481 hybrid contribution -1.510 0.231 1.184 1.933 sum 11.528 -1.550 -24.075 26.738 Atomic orbital electron populations 1.21833 0.96436 1.01839 1.01019 1.21544 0.95606 0.93399 1.04124 1.21286 1.02087 0.96217 0.90915 0.86778 1.20330 1.00132 0.98608 0.90489 1.19797 0.94976 0.97032 0.96618 1.21237 0.94392 1.00581 0.98284 1.21409 1.00696 0.96585 0.95468 1.21460 0.95392 0.97670 1.00338 1.21413 0.95405 1.00209 0.97276 1.21239 1.00418 0.96515 0.96050 1.20893 0.80900 0.82308 0.83141 1.90672 1.35925 1.35817 1.85005 1.50258 1.49132 1.33700 1.04352 1.22921 1.00735 0.96752 0.79624 1.22300 0.96837 0.95299 0.95448 1.23295 0.95990 0.92554 0.87211 1.22525 0.96811 1.03284 0.92364 1.21004 0.85219 0.95620 0.92356 1.44844 1.10591 1.75344 1.04565 1.19330 0.89867 1.35747 0.92195 0.90777 1.25578 1.01227 1.01949 0.96936 1.70163 1.32219 1.51350 1.05886 0.85222 0.79402 0.78129 0.77012 1.20194 1.21809 1.20864 1.21140 0.94220 0.96040 0.84943 0.91414 0.95765 0.92126 0.88886 0.90461 0.91302 0.91603 0.85469 0.84345 0.84295 0.84504 0.85751 0.93713 0.87843 0.85639 0.87896 0.89216 0.89079 0.97510 0.97270 0.94401 0.94541 0.96073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.34 71.98 0.67 -2.72 16 2 C -0.11 -1.95 5.44 30.60 0.17 -1.78 16 3 C -0.08 -1.69 2.25 -11.54 -0.03 -1.71 16 4 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 5 C -0.06 -1.19 4.01 29.85 0.12 -1.07 16 6 C -0.08 -1.44 4.57 -19.87 -0.09 -1.53 16 7 C -0.13 -1.93 9.72 22.27 0.22 -1.72 16 8 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 9 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 10 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 11 C -0.12 -1.95 8.31 22.27 0.19 -1.77 16 12 C 0.54 15.47 5.69 87.66 0.50 15.97 16 13 O -0.59 -22.61 16.75 -3.06 -0.05 -22.66 16 14 N -0.64 -17.35 3.62 -863.60 -3.12 -20.48 16 15 C 0.12 3.85 8.15 85.91 0.70 4.55 16 16 C -0.10 -2.91 0.99 -52.15 -0.05 -2.96 16 17 C 0.13 2.65 7.71 85.91 0.66 3.31 16 18 C -0.11 -3.47 6.36 31.36 0.20 -3.27 16 19 C 0.18 8.66 5.39 86.80 0.47 9.13 16 20 N -0.63 -31.94 3.41 -693.36 -2.36 -34.30 16 21 C -0.24 -13.81 10.28 84.03 0.86 -12.95 16 22 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 23 C -0.06 -3.67 5.49 84.86 0.47 -3.21 16 24 N -0.95 -57.04 10.30 21.65 0.22 -56.82 16 25 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 29 C 0.16 6.40 6.63 86.28 0.57 6.97 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.02 0.69 6.88 -2.39 -0.02 0.68 16 32 H 0.06 1.26 6.33 -2.39 -0.02 1.24 16 33 H 0.09 1.40 6.29 -2.39 -0.02 1.38 16 34 H 0.08 1.28 5.95 -2.39 -0.01 1.26 16 35 H 0.07 1.60 6.31 -2.39 -0.02 1.59 16 36 H 0.07 1.50 8.04 -2.39 -0.02 1.48 16 37 H 0.13 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 40 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.12 1.81 7.71 -2.91 -0.02 1.79 16 42 H 0.04 1.76 8.12 -2.38 -0.02 1.74 16 43 H 0.10 2.81 8.04 -2.39 -0.02 2.79 16 44 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.10 1.75 6.21 -2.39 -0.01 1.73 16 46 H 0.09 2.39 7.99 -2.39 -0.02 2.37 16 47 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 48 H 0.01 0.36 7.40 -2.39 -0.02 0.34 16 49 H 0.01 0.49 7.47 -2.39 -0.02 0.47 16 50 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 51 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.02 0.90 8.07 -2.39 -0.02 0.88 16 Total: -1.00 -75.03 405.30 3.90 -71.13 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.89 Total: 13.43 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 6.29 Total: 1.05 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -5.26 Total: -111.60 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -75.03 3.90 -71.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073026531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.583 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds