Wall clock time and date at job start Wed Apr 1 2020 02:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 H 1.09002 * 109.46580 * 305.32415 * 3 2 1 5 5 C 1.52994 * 109.46857 * 185.32525 * 3 2 1 6 6 C 1.50700 * 109.47644 * 65.00059 * 5 3 2 7 7 C 1.38232 * 119.99951 * 269.72739 * 6 5 3 8 8 C 1.38236 * 120.00042 * 179.76257 * 7 6 5 9 9 C 1.38232 * 119.99847 * 0.50711 * 8 7 6 10 10 C 1.38230 * 119.99999 * 359.74269 * 9 8 7 11 11 C 1.38231 * 120.00375 * 0.02562 * 10 9 8 12 12 C 1.50696 * 109.46865 * 65.32414 * 3 2 1 13 13 O 1.21277 * 120.00458 * 35.18389 * 12 3 2 14 14 N 1.34781 * 119.99555 * 215.18613 * 12 3 2 15 15 C 1.47854 * 134.36042 * 175.05555 * 14 12 3 16 16 C 1.52564 * 85.66040 * 156.36673 * 15 14 12 17 17 C 1.47844 * 134.36481 * 355.04277 * 14 12 3 18 18 C 1.53924 * 115.92095 * 264.97369 * 16 15 14 19 19 C 1.55157 * 101.43005 * 264.39665 * 18 16 15 20 20 N 1.47538 * 105.01312 * 324.38187 * 19 18 16 21 21 C 1.36934 * 125.66147 * 203.91435 * 20 19 18 22 22 H 1.08005 * 120.00180 * 179.97438 * 21 20 19 23 23 C 1.38810 * 120.00038 * 0.02562 * 21 20 19 24 24 N 1.31622 * 120.00207 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00433 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46766 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.46921 * 119.99702 * 25 23 21 28 28 H 1.48502 * 109.47169 * 240.00187 * 25 23 21 29 29 C 1.47370 * 108.68183 * 23.91156 * 20 19 18 30 30 H 1.09000 * 109.47080 * 294.75326 * 1 2 3 31 31 H 1.08997 * 109.47095 * 54.75185 * 1 2 3 32 32 H 1.08999 * 109.47082 * 174.75066 * 1 2 3 33 33 H 1.09004 * 109.46510 * 239.99824 * 2 1 3 34 34 H 1.09001 * 109.47013 * 120.00295 * 2 1 3 35 35 H 1.08997 * 109.46978 * 185.00165 * 5 3 2 36 36 H 1.09002 * 109.47076 * 304.99868 * 5 3 2 37 37 H 1.08007 * 120.00044 * 359.97438 * 7 6 5 38 38 H 1.08001 * 119.99944 * 180.23235 * 8 7 6 39 39 H 1.08006 * 120.00027 * 179.72795 * 9 8 7 40 40 H 1.08003 * 119.99891 * 179.97438 * 10 9 8 41 41 H 1.07996 * 120.00587 * 179.97438 * 11 10 9 42 42 H 1.08999 * 113.84632 * 42.17850 * 15 14 12 43 43 H 1.09001 * 113.94960 * 270.55983 * 15 14 12 44 44 H 1.09005 * 113.84250 * 89.44978 * 17 14 12 45 45 H 1.09007 * 113.84569 * 317.81805 * 17 14 12 46 46 H 1.09008 * 111.00742 * 146.36997 * 18 16 15 47 47 H 1.08994 * 111.08032 * 22.45850 * 18 16 15 48 48 H 1.08999 * 110.33549 * 205.49577 * 19 18 16 49 49 H 1.08997 * 110.42022 * 83.30883 * 19 18 16 50 50 H 0.97000 * 120.00547 * 180.02562 * 24 23 21 51 51 H 1.09004 * 109.97768 * 117.31671 * 29 20 19 52 52 H 1.08996 * 109.98572 * 238.57541 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9830 -0.8385 5 6 3.5641 1.4445 -0.1339 6 6 3.9511 0.8848 -1.4785 7 6 4.1769 -0.4712 -1.6238 8 6 4.5271 -0.9852 -2.8583 9 6 4.6618 -0.1418 -3.9452 10 6 4.4411 1.2149 -3.7988 11 6 4.0862 1.7283 -2.5654 12 6 1.6482 2.1137 1.2911 13 8 1.6266 1.4774 2.3232 14 7 1.3217 3.4214 1.2986 15 6 0.8153 4.3545 2.3276 16 6 1.4225 5.4549 1.4627 17 6 1.3276 4.4942 0.2814 18 6 2.8413 5.9091 1.8498 19 6 2.5371 7.1454 2.7366 20 7 1.3538 7.7756 2.1208 21 6 0.9951 9.0914 2.2439 22 1 0.1063 9.4573 1.7513 23 6 1.7744 9.9553 3.0011 24 7 2.8578 9.5096 3.6010 25 14 1.2856 11.7505 3.1685 26 1 0.0372 11.9970 2.4031 27 1 1.0599 12.0704 4.6009 28 1 2.3714 12.6111 2.6341 29 6 0.6218 6.7541 1.3511 30 1 -0.3633 0.4303 0.9332 31 1 -0.3633 0.5931 -0.8392 32 1 -0.3633 -1.0233 -0.0940 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9353 2.4654 -0.0448 36 1 3.9989 0.8298 0.6543 37 1 4.0763 -1.1295 -0.7735 38 1 4.6998 -2.0452 -2.9726 39 1 4.9397 -0.5429 -4.9087 40 1 4.5467 1.8739 -4.6479 41 1 3.9142 2.7883 -2.4509 42 1 1.2960 4.2421 3.2994 43 1 -0.2721 4.3944 2.3920 44 1 0.3961 4.5754 -0.2788 45 1 2.2115 4.4918 -0.3566 46 1 3.4153 6.1923 0.9675 47 1 3.3584 5.1369 2.4193 48 1 3.3813 7.8350 2.7276 49 1 2.3131 6.8355 3.7573 50 1 3.4023 10.1132 4.1304 51 1 -0.3747 6.6148 1.7705 52 1 0.5471 7.0571 0.3068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073026532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:52 Heat of formation + Delta-G solvation = 39.148526 kcal Electronic energy + Delta-G solvation = -30140.112376 eV Core-core repulsion = 26298.845166 eV Total energy + Delta-G solvation = -3841.267210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.73928 -39.69274 -38.51387 -35.70189 -35.35620 -32.29385 -32.20135 -31.13507 -29.88414 -29.04650 -28.35395 -26.32809 -25.78029 -24.59565 -23.65959 -22.93306 -21.97058 -21.09954 -20.32551 -18.91038 -18.31192 -17.32272 -16.89573 -16.66109 -15.96643 -15.58951 -15.38469 -15.27592 -14.81537 -14.46711 -14.41498 -14.03378 -13.73243 -13.68662 -13.47820 -13.34418 -12.96949 -12.88606 -12.73198 -12.41261 -12.16553 -12.07026 -11.91939 -11.71729 -11.42404 -11.28512 -11.24700 -11.19689 -11.02638 -10.98298 -10.88551 -10.81400 -10.41998 -10.08548 -10.00556 -9.88410 -9.69487 -9.43474 -9.14241 -8.92267 -8.68060 -8.50767 -6.86973 -5.67894 -3.09762 1.09174 1.15708 2.70403 2.90303 3.38209 3.43717 3.46252 3.54969 4.25961 4.45223 4.47495 4.63588 4.68499 4.70406 4.76604 4.84524 4.90220 5.00820 5.05375 5.16492 5.21305 5.27435 5.30464 5.42459 5.45347 5.47220 5.51289 5.53254 5.61750 5.63692 5.70937 5.80217 5.82362 5.84121 5.87047 5.89272 5.95156 6.08542 6.14334 6.17375 6.22503 6.25497 6.27357 6.40219 6.48143 6.55660 6.66947 6.71742 6.76139 7.48735 7.59827 7.82330 7.84318 8.26063 8.32723 9.18988 9.79732 10.44330 11.36109 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.002400 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.933115 B =11663.310952 C =12615.198741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.093 4.093 4 H 0.088 0.912 5 C -0.071 4.071 6 C -0.075 4.075 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.126 4.126 10 C -0.118 4.118 11 C -0.115 4.115 12 C 0.540 3.460 13 O -0.545 6.545 14 N -0.639 5.639 15 C 0.124 3.876 16 C -0.101 4.101 17 C 0.114 3.886 18 C -0.119 4.119 19 C 0.154 3.846 20 N -0.604 5.604 21 C -0.222 4.222 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.922 5.922 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.151 3.849 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.106 0.894 49 H 0.013 0.987 50 H 0.252 0.748 51 H 0.026 0.974 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 -20.083 -14.204 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.115 4.115 4 H 0.106 0.894 5 C -0.109 4.109 6 C -0.075 4.075 7 C -0.132 4.132 8 C -0.138 4.138 9 C -0.144 4.144 10 C -0.136 4.136 11 C -0.133 4.133 12 C 0.330 3.670 13 O -0.423 6.423 14 N -0.374 5.374 15 C 0.003 3.997 16 C -0.102 4.102 17 C -0.009 4.009 18 C -0.157 4.157 19 C 0.029 3.971 20 N -0.330 5.330 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.207 4.207 24 N -0.570 5.570 25 Si 0.745 3.255 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.025 3.975 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.124 0.876 49 H 0.031 0.969 50 H 0.063 0.937 51 H 0.043 0.957 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.329 -20.435 -13.540 24.550 hybrid contribution -0.358 0.944 0.039 1.010 sum 0.971 -19.491 -13.501 23.730 Atomic orbital electron populations 1.21788 0.95699 1.01686 1.01899 1.21526 0.96143 0.94166 1.03022 1.21282 0.96434 0.97822 0.95916 0.89419 1.20520 0.93572 1.02335 0.94472 1.19797 0.98907 0.93706 0.95093 1.21102 0.99718 0.94767 0.97645 1.21140 0.99988 0.99715 0.92998 1.21147 1.00698 0.93814 0.98757 1.21156 0.99584 0.95455 0.97415 1.21113 0.99817 0.99835 0.92519 1.20201 0.76610 0.79691 0.90540 1.90676 1.54070 1.63121 1.34426 1.50230 1.64808 1.07329 1.15021 1.23052 0.98998 0.83823 0.93874 1.22467 0.99262 0.93999 0.94509 1.23142 1.01881 0.82926 0.92966 1.22703 0.92604 0.99617 1.00802 1.21972 0.92669 0.90649 0.91786 1.44589 1.26173 1.05047 1.57196 1.19111 1.07070 0.83119 1.25724 0.90392 1.24793 0.97598 0.98438 0.99857 1.69804 1.16593 1.33568 1.37061 0.86007 0.77536 0.84587 0.77410 1.20529 1.21771 1.21755 1.20995 0.93935 0.86967 0.95650 0.92531 0.92955 0.92549 0.90795 0.90655 0.90283 0.90031 0.85962 0.86194 0.86303 0.86076 0.85903 0.89965 0.89804 0.89681 0.90080 0.91619 0.92218 0.87592 0.96917 0.93749 0.95653 0.95193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.64 37.16 0.36 -1.20 16 2 C -0.11 -1.13 4.91 -26.73 -0.13 -1.26 16 3 C -0.09 -1.01 2.04 -91.78 -0.19 -1.20 16 4 H 0.09 0.87 7.76 -51.93 -0.40 0.47 16 5 C -0.07 -0.72 4.82 -27.89 -0.13 -0.85 16 6 C -0.07 -0.69 4.71 -104.62 -0.49 -1.19 16 7 C -0.11 -0.98 7.88 -39.58 -0.31 -1.29 16 8 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 9 C -0.13 -0.97 10.05 -39.59 -0.40 -1.37 16 10 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 11 C -0.11 -1.02 9.70 -39.58 -0.38 -1.41 16 12 C 0.54 7.78 6.18 -10.99 -0.07 7.71 16 13 O -0.55 -9.82 16.72 5.56 0.09 -9.72 16 14 N -0.64 -8.97 3.62 -185.65 -0.67 -9.64 16 15 C 0.12 1.92 8.08 -3.52 -0.03 1.89 16 16 C -0.10 -1.61 0.98 -154.68 -0.15 -1.76 16 17 C 0.11 1.40 7.65 -3.53 -0.03 1.37 16 18 C -0.12 -2.13 6.42 -25.11 -0.16 -2.29 16 19 C 0.15 3.61 5.90 -2.33 -0.01 3.59 16 20 N -0.60 -14.80 3.41 -170.35 -0.58 -15.38 16 21 C -0.22 -6.00 10.28 -15.06 -0.15 -6.15 16 22 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 23 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 24 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 25 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 C 0.15 2.89 6.75 -3.56 -0.02 2.86 16 30 H 0.06 0.69 7.42 -51.93 -0.39 0.30 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.66 5.92 -51.93 -0.31 0.35 16 34 H 0.07 0.86 7.67 -51.93 -0.40 0.46 16 35 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.12 0.93 8.00 -52.48 -0.42 0.51 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 43 H 0.08 1.20 8.00 -51.93 -0.42 0.79 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.88 8.12 -51.92 -0.42 0.46 16 46 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 47 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 48 H 0.11 2.82 5.89 -51.93 -0.31 2.52 16 49 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.03 0.48 7.86 -51.93 -0.41 0.08 16 52 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 LS Contribution 412.43 15.07 6.22 6.22 Total: -1.00 -31.55 412.43 -11.52 -43.08 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.92 Total: 0.31 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.20 Total: -5.65 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.69 Total: -50.90 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.55 -11.52 -43.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073026532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.225 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds