Wall clock time and date at job start Wed Apr 1 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47012 * 2 1 4 4 C 1.53000 * 109.47774 * 120.00229 * 2 1 3 5 5 C 1.50700 * 109.46921 * 299.99854 * 4 2 1 6 6 O 1.21286 * 119.99841 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99805 * 179.97438 * 5 4 2 8 8 C 1.47885 * 134.33936 * 179.97438 * 7 5 4 9 9 C 1.52368 * 85.58964 * 156.48622 * 8 7 5 10 10 C 1.47887 * 134.34262 * 359.96292 * 7 5 4 11 11 C 1.53658 * 116.39717 * 141.35074 * 9 8 7 12 12 C 1.54607 * 102.73022 * 162.91744 * 11 9 8 13 13 N 1.47137 * 107.36428 * 339.24245 * 12 11 9 14 14 C 1.36938 * 125.58257 * 179.11256 * 13 12 11 15 15 H 1.08002 * 119.99870 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00021 * 359.97336 * 14 13 12 17 17 N 1.31613 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99551 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47712 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46939 * 120.00343 * 18 16 14 21 21 H 1.48505 * 109.47084 * 239.99765 * 18 16 14 22 22 C 1.47725 * 108.82669 * 359.07915 * 13 12 11 23 23 C 1.50700 * 109.46777 * 240.00172 * 2 1 3 24 24 C 1.38233 * 120.00304 * 239.71975 * 23 2 1 25 25 C 1.38235 * 120.00334 * 179.76698 * 24 23 2 26 26 C 1.38239 * 119.99982 * 0.48735 * 25 24 23 27 27 C 1.38238 * 119.99621 * 359.79280 * 26 25 24 28 28 C 1.38229 * 120.00326 * 359.95265 * 27 26 25 29 29 H 1.08999 * 109.46863 * 299.99375 * 1 2 3 30 30 H 1.09000 * 109.47629 * 59.99816 * 1 2 3 31 31 H 1.09004 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47229 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47095 * 299.99967 * 3 2 1 34 34 H 1.09002 * 109.47291 * 60.00446 * 3 2 1 35 35 H 1.08998 * 109.47032 * 179.97438 * 4 2 1 36 36 H 1.09007 * 109.46850 * 59.99832 * 4 2 1 37 37 H 1.09005 * 113.85578 * 42.32235 * 8 7 5 38 38 H 1.09009 * 113.97216 * 270.66636 * 8 7 5 39 39 H 1.08995 * 113.85518 * 89.34905 * 10 7 5 40 40 H 1.09002 * 113.85341 * 317.67535 * 10 7 5 41 41 H 1.08993 * 110.76200 * 44.60660 * 11 9 8 42 42 H 1.09003 * 110.75888 * 281.22670 * 11 9 8 43 43 H 1.08997 * 109.86564 * 98.69116 * 12 11 9 44 44 H 1.09000 * 109.86527 * 219.65895 * 12 11 9 45 45 H 0.97004 * 119.99629 * 179.97438 * 17 16 14 46 46 H 1.08994 * 110.39981 * 141.25248 * 22 13 12 47 47 H 1.09000 * 110.39188 * 263.54275 * 22 13 12 48 48 H 1.08000 * 120.00015 * 0.02562 * 24 23 2 49 49 H 1.07999 * 120.00158 * 180.26054 * 25 24 23 50 50 H 1.07994 * 120.00494 * 179.76805 * 26 25 24 51 51 H 1.08006 * 119.99988 * 179.97438 * 27 26 25 52 52 H 1.08001 * 120.00548 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5379 -0.0109 2.4797 6 8 0.8402 0.9749 2.3684 7 7 1.8632 -0.4717 3.7037 8 6 1.5586 -0.0403 5.0851 9 6 1.8381 -1.4870 5.4730 10 6 2.6665 -1.6099 4.1999 11 6 2.5853 -1.7070 6.7976 12 6 2.3114 -3.1983 7.0996 13 7 1.1165 -3.5890 6.3351 14 6 0.5555 -4.8381 6.3167 15 1 -0.3258 -5.0254 5.7212 16 6 1.1196 -5.8634 7.0633 17 7 2.1933 -5.6349 7.7893 18 14 0.3547 -7.5674 7.0374 19 1 -0.8355 -7.5624 6.1495 20 1 1.3472 -8.5478 6.5285 21 1 -0.0553 -7.9469 8.4134 22 6 0.6207 -2.4128 5.5915 23 6 2.0322 -0.7104 -1.2305 24 6 2.8317 -1.8309 -1.1038 25 6 3.2884 -2.4854 -2.2325 26 6 2.9540 -2.0134 -3.4881 27 6 2.1593 -0.8894 -3.6148 28 6 1.6982 -0.2381 -2.4861 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 -0.7216 1.2488 36 1 1.6768 -1.7490 1.2491 37 1 0.5224 0.2636 5.2337 38 1 2.2748 0.6722 5.4946 39 1 3.7226 -1.3775 4.3370 40 1 2.5001 -2.5383 3.6534 41 1 2.1749 -1.0721 7.5827 42 1 3.6532 -1.5278 6.6731 43 1 3.1640 -3.8019 6.7884 44 1 2.1319 -3.3333 8.1662 45 1 2.5872 -6.3514 8.3113 46 1 0.2705 -2.7084 4.6026 47 1 -0.1793 -1.9223 6.1461 48 1 3.0960 -2.1976 -0.1230 49 1 3.9096 -3.3633 -2.1335 50 1 3.3139 -2.5224 -4.3699 51 1 1.8983 -0.5203 -4.5957 52 1 1.0770 0.6398 -2.5851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073457382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:55 Heat of formation + Delta-G solvation = 51.639371 kcal Electronic energy + Delta-G solvation = -30304.033928 eV Core-core repulsion = 26463.308362 eV Total energy + Delta-G solvation = -3840.725566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.81083 -39.94397 -38.47299 -35.96514 -35.37298 -32.29118 -31.29702 -30.24079 -29.82680 -28.92635 -27.47935 -27.22279 -26.16574 -25.61296 -23.70539 -23.06743 -22.40277 -20.34425 -19.83028 -18.82935 -18.23116 -17.52584 -16.91093 -16.33189 -15.81327 -15.60821 -15.11902 -15.03392 -14.77252 -14.43761 -14.41128 -14.00590 -13.82087 -13.68615 -13.48070 -13.44870 -12.77214 -12.67335 -12.38190 -12.35690 -12.04275 -11.91243 -11.84712 -11.78532 -11.55028 -11.39959 -11.11288 -11.02828 -10.95112 -10.87304 -10.79086 -10.64932 -10.40700 -10.11828 -10.08399 -9.89064 -9.69978 -9.26179 -9.06647 -8.82682 -8.63609 -8.49247 -6.87460 -5.75110 -3.08517 1.22122 1.25188 2.73224 2.91496 3.37404 3.43736 3.45653 3.64190 4.31882 4.44665 4.48429 4.66034 4.77721 4.84604 4.86771 4.90186 4.98693 5.01497 5.17111 5.19276 5.33221 5.41685 5.46587 5.47530 5.50743 5.57163 5.65267 5.71242 5.72481 5.73148 5.80066 5.81716 5.84162 5.93219 5.94500 6.00911 6.06665 6.14365 6.19824 6.27024 6.36857 6.39065 6.43610 6.45289 6.50149 6.53949 6.64678 6.69611 6.85794 7.52551 7.57210 7.79137 7.86611 8.21358 8.29120 9.18516 9.78167 10.43577 11.36522 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.002731 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.830580 B =10250.648210 C =11728.825287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.005 4.005 3 C -0.148 4.148 4 C -0.130 4.130 5 C 0.537 3.463 6 O -0.542 6.542 7 N -0.640 5.640 8 C 0.121 3.879 9 C -0.104 4.104 10 C 0.120 3.880 11 C -0.132 4.132 12 C 0.179 3.821 13 N -0.605 5.605 14 C -0.227 4.227 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.162 3.838 23 C -0.065 4.065 24 C -0.124 4.124 25 C -0.117 4.117 26 C -0.130 4.130 27 C -0.120 4.120 28 C -0.114 4.114 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.251 0.749 46 H 0.039 0.961 47 H 0.024 0.976 48 H 0.126 0.874 49 H 0.121 0.879 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 11.922 -16.981 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 C -0.205 4.205 4 C -0.170 4.170 5 C 0.327 3.673 6 O -0.421 6.421 7 N -0.375 5.375 8 C -0.001 4.001 9 C -0.105 4.105 10 C -0.002 4.002 11 C -0.171 4.171 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.355 4.355 15 H 0.095 0.905 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C 0.036 3.964 23 C -0.065 4.065 24 C -0.142 4.142 25 C -0.135 4.135 26 C -0.148 4.148 27 C -0.138 4.138 28 C -0.132 4.132 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.042 0.958 48 H 0.144 0.856 49 H 0.139 0.861 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.328 12.292 -17.149 21.360 hybrid contribution -0.164 -1.136 -0.030 1.148 sum 3.164 11.156 -17.180 20.727 Atomic orbital electron populations 1.22123 0.92970 1.01897 1.03668 1.19195 0.96513 0.95078 0.89727 1.22113 1.00142 0.94582 1.03674 1.21799 1.02248 1.00813 0.92094 1.20217 0.80089 0.83787 0.83175 1.90549 1.39026 1.26905 1.85638 1.50288 1.51612 1.30942 1.04638 1.22971 1.01756 0.96535 0.78853 1.22459 0.98608 0.94357 0.95109 1.23064 0.95395 0.89145 0.92585 1.22680 0.98722 1.00902 0.94782 1.21200 0.89951 0.87354 0.96103 1.44569 1.30386 1.05639 1.52553 1.19086 1.08187 0.84617 1.23620 0.90462 1.24782 0.97913 0.98190 0.99492 1.69965 1.22413 1.31410 1.33129 0.86064 0.78261 0.84260 0.77302 1.20520 1.21760 1.21758 1.21027 0.92048 0.87755 0.95552 1.19910 0.96787 0.95334 0.94474 1.21242 0.98193 0.95696 0.99086 1.21173 0.99919 0.99772 0.92602 1.21129 0.99166 0.97063 0.97422 1.21117 0.98222 0.96073 0.98372 1.20964 1.00303 1.00098 0.91876 0.89208 0.92958 0.93231 0.93462 0.92936 0.89283 0.88933 0.88631 0.90124 0.89910 0.89719 0.89537 0.91738 0.91763 0.93493 0.93851 0.93808 0.94283 0.95797 0.85620 0.86100 0.86376 0.86310 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 7.99 37.16 0.30 -1.49 16 2 C 0.00 -0.05 0.60 -155.66 -0.09 -0.15 16 3 C -0.15 -1.66 7.99 37.16 0.30 -1.36 16 4 C -0.13 -1.49 3.17 -27.88 -0.09 -1.58 16 5 C 0.54 7.55 7.47 -10.99 -0.08 7.47 16 6 O -0.54 -8.79 12.07 5.55 0.07 -8.73 16 7 N -0.64 -8.89 3.62 -186.92 -0.68 -9.57 16 8 C 0.12 1.65 8.21 -3.60 -0.03 1.62 16 9 C -0.10 -1.61 0.99 -154.84 -0.15 -1.77 16 10 C 0.12 1.64 7.92 -3.59 -0.03 1.62 16 11 C -0.13 -2.17 6.36 -25.55 -0.16 -2.34 16 12 C 0.18 4.03 5.39 -2.85 -0.02 4.02 16 13 N -0.60 -14.63 3.41 -170.50 -0.58 -15.21 16 14 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 17 N -0.92 -26.19 10.30 55.49 0.57 -25.62 16 18 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.16 3.18 6.63 -3.17 -0.02 3.16 16 23 C -0.06 -0.70 4.76 -104.62 -0.50 -1.19 16 24 C -0.12 -1.29 8.98 -39.58 -0.36 -1.64 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 27 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 28 C -0.11 -1.14 8.71 -39.58 -0.34 -1.48 16 29 H 0.09 1.25 5.51 -51.93 -0.29 0.97 16 30 H 0.05 0.56 7.39 -51.93 -0.38 0.17 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.53 7.39 -51.93 -0.38 0.15 16 34 H 0.09 1.17 5.51 -51.93 -0.29 0.88 16 35 H 0.09 0.94 7.50 -51.93 -0.39 0.55 16 36 H 0.10 1.08 7.53 -51.93 -0.39 0.69 16 37 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 38 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 40 H 0.09 1.25 8.12 -51.93 -0.42 0.82 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 43 H 0.05 1.17 7.39 -51.93 -0.38 0.79 16 44 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 45 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.13 1.19 5.90 -52.49 -0.31 0.88 16 49 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 50 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 51 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 52 H 0.12 1.06 7.10 -52.49 -0.37 0.69 16 LS Contribution 401.41 15.07 6.05 6.05 Total: -1.00 -30.52 401.41 -10.91 -41.43 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.60 Total: 1.27 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.72 Total: -6.26 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.69 Total: -50.40 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.73 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.52 -10.91 -41.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073457382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.071 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds