Wall clock time and date at job start Wed Apr 1 2020 01:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47012 * 2 1 4 4 C 1.53000 * 109.47774 * 120.00229 * 2 1 3 5 5 C 1.50700 * 109.46921 * 299.99854 * 4 2 1 6 6 O 1.21286 * 119.99841 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99805 * 179.97438 * 5 4 2 8 8 C 1.47885 * 134.33936 * 179.97438 * 7 5 4 9 9 C 1.52368 * 85.58964 * 156.48622 * 8 7 5 10 10 C 1.47887 * 134.34262 * 359.96292 * 7 5 4 11 11 C 1.53658 * 116.39717 * 141.35074 * 9 8 7 12 12 C 1.54607 * 102.73022 * 162.91744 * 11 9 8 13 13 N 1.47137 * 107.36428 * 339.24245 * 12 11 9 14 14 C 1.36938 * 125.58257 * 179.11256 * 13 12 11 15 15 H 1.08002 * 119.99870 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00021 * 359.97336 * 14 13 12 17 17 N 1.31613 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99551 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47712 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46939 * 120.00343 * 18 16 14 21 21 H 1.48505 * 109.47084 * 239.99765 * 18 16 14 22 22 C 1.47725 * 108.82669 * 359.07915 * 13 12 11 23 23 C 1.50700 * 109.46777 * 240.00172 * 2 1 3 24 24 C 1.38233 * 120.00304 * 239.71975 * 23 2 1 25 25 C 1.38235 * 120.00334 * 179.76698 * 24 23 2 26 26 C 1.38239 * 119.99982 * 0.48735 * 25 24 23 27 27 C 1.38238 * 119.99621 * 359.79280 * 26 25 24 28 28 C 1.38229 * 120.00326 * 359.95265 * 27 26 25 29 29 H 1.08999 * 109.46863 * 299.99375 * 1 2 3 30 30 H 1.09000 * 109.47629 * 59.99816 * 1 2 3 31 31 H 1.09004 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47229 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47095 * 299.99967 * 3 2 1 34 34 H 1.09002 * 109.47291 * 60.00446 * 3 2 1 35 35 H 1.08998 * 109.47032 * 179.97438 * 4 2 1 36 36 H 1.09007 * 109.46850 * 59.99832 * 4 2 1 37 37 H 1.09005 * 113.85578 * 42.32235 * 8 7 5 38 38 H 1.09009 * 113.97216 * 270.66636 * 8 7 5 39 39 H 1.08995 * 113.85518 * 89.34905 * 10 7 5 40 40 H 1.09002 * 113.85341 * 317.67535 * 10 7 5 41 41 H 1.08993 * 110.76200 * 44.60660 * 11 9 8 42 42 H 1.09003 * 110.75888 * 281.22670 * 11 9 8 43 43 H 1.08997 * 109.86564 * 98.69116 * 12 11 9 44 44 H 1.09000 * 109.86527 * 219.65895 * 12 11 9 45 45 H 0.97004 * 119.99629 * 179.97438 * 17 16 14 46 46 H 1.08994 * 110.39981 * 141.25248 * 22 13 12 47 47 H 1.09000 * 110.39188 * 263.54275 * 22 13 12 48 48 H 1.08000 * 120.00015 * 0.02562 * 24 23 2 49 49 H 1.07999 * 120.00158 * 180.26054 * 25 24 23 50 50 H 1.07994 * 120.00494 * 179.76805 * 26 25 24 51 51 H 1.08006 * 119.99988 * 179.97438 * 27 26 25 52 52 H 1.08001 * 120.00548 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5379 -0.0109 2.4797 6 8 0.8402 0.9749 2.3684 7 7 1.8632 -0.4717 3.7037 8 6 1.5586 -0.0403 5.0851 9 6 1.8381 -1.4870 5.4730 10 6 2.6665 -1.6099 4.1999 11 6 2.5853 -1.7070 6.7976 12 6 2.3114 -3.1983 7.0996 13 7 1.1165 -3.5890 6.3351 14 6 0.5555 -4.8381 6.3167 15 1 -0.3258 -5.0254 5.7212 16 6 1.1196 -5.8634 7.0633 17 7 2.1933 -5.6349 7.7893 18 14 0.3547 -7.5674 7.0374 19 1 -0.8355 -7.5624 6.1495 20 1 1.3472 -8.5478 6.5285 21 1 -0.0553 -7.9469 8.4134 22 6 0.6207 -2.4128 5.5915 23 6 2.0322 -0.7104 -1.2305 24 6 2.8317 -1.8309 -1.1038 25 6 3.2884 -2.4854 -2.2325 26 6 2.9540 -2.0134 -3.4881 27 6 2.1593 -0.8894 -3.6148 28 6 1.6982 -0.2381 -2.4861 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 -0.7216 1.2488 36 1 1.6768 -1.7490 1.2491 37 1 0.5224 0.2636 5.2337 38 1 2.2748 0.6722 5.4946 39 1 3.7226 -1.3775 4.3370 40 1 2.5001 -2.5383 3.6534 41 1 2.1749 -1.0721 7.5827 42 1 3.6532 -1.5278 6.6731 43 1 3.1640 -3.8019 6.7884 44 1 2.1319 -3.3333 8.1662 45 1 2.5872 -6.3514 8.3113 46 1 0.2705 -2.7084 4.6026 47 1 -0.1793 -1.9223 6.1461 48 1 3.0960 -2.1976 -0.1230 49 1 3.9096 -3.3633 -2.1335 50 1 3.3139 -2.5224 -4.3699 51 1 1.8983 -0.5203 -4.5957 52 1 1.0770 0.6398 -2.5851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073457382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:54 Heat of formation + Delta-G solvation = 36.882964 kcal Electronic energy + Delta-G solvation = -30304.673814 eV Core-core repulsion = 26463.308362 eV Total energy + Delta-G solvation = -3841.365452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.91642 -40.90073 -39.52373 -37.35476 -36.48130 -34.10576 -32.09366 -31.53601 -30.80951 -30.27244 -28.74663 -28.14051 -27.36379 -27.13753 -25.25165 -23.91231 -23.15607 -22.10197 -20.81381 -19.94983 -19.41679 -18.80594 -18.35029 -17.29417 -16.99479 -16.76276 -16.62602 -15.98257 -15.89497 -15.66547 -15.55656 -15.42659 -14.89335 -14.79437 -14.40440 -14.22522 -14.13531 -13.88390 -13.66635 -13.46105 -13.42809 -13.21300 -12.95378 -12.83353 -12.78611 -12.72532 -12.40634 -12.38694 -12.29700 -11.97965 -11.92805 -11.89980 -11.75532 -11.64351 -11.55614 -11.43089 -11.25415 -10.67929 -10.38488 -9.77543 -9.63468 -9.53763 -8.86550 -7.83225 -5.17721 0.49898 0.54221 1.46871 1.47539 1.57395 1.66091 1.84212 2.49990 2.92322 3.28323 3.35607 3.47574 3.62676 3.69005 3.76312 3.91384 4.01042 4.15200 4.18382 4.19174 4.22010 4.29706 4.33515 4.50430 4.56617 4.61706 4.65535 4.66910 4.67489 4.71811 4.75916 4.80245 4.83754 4.90241 4.99883 5.02357 5.06283 5.07576 5.12696 5.14806 5.20350 5.21703 5.25379 5.43055 5.44996 5.47969 5.66373 5.67440 5.74299 5.76698 5.84047 6.16430 6.23006 6.76924 7.13997 7.20809 7.79962 8.43677 9.26667 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.002731 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.830580 B =10250.648210 C =11728.825287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.000 4.000 3 C -0.142 4.142 4 C -0.124 4.124 5 C 0.532 3.468 6 O -0.566 6.566 7 N -0.643 5.643 8 C 0.129 3.871 9 C -0.098 4.098 10 C 0.128 3.872 11 C -0.113 4.113 12 C 0.184 3.816 13 N -0.624 5.624 14 C -0.239 4.239 15 H 0.076 0.924 16 C -0.061 4.061 17 N -0.947 5.947 18 Si 0.972 3.028 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.294 1.294 22 C 0.160 3.840 23 C -0.076 4.076 24 C -0.138 4.138 25 C -0.127 4.127 26 C -0.134 4.134 27 C -0.124 4.124 28 C -0.125 4.125 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.017 0.983 44 H 0.004 0.996 45 H 0.246 0.754 46 H 0.032 0.968 47 H 0.021 0.979 48 H 0.130 0.870 49 H 0.135 0.865 50 H 0.139 0.861 51 H 0.140 0.860 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.571 12.700 -18.772 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.001 4.001 3 C -0.199 4.199 4 C -0.164 4.164 5 C 0.324 3.676 6 O -0.446 6.446 7 N -0.377 5.377 8 C 0.007 3.993 9 C -0.100 4.100 10 C 0.006 3.994 11 C -0.152 4.152 12 C 0.060 3.940 13 N -0.351 5.351 14 C -0.368 4.368 15 H 0.094 0.906 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.801 3.199 19 H -0.194 1.194 20 H -0.217 1.217 21 H -0.221 1.221 22 C 0.035 3.965 23 C -0.077 4.077 24 C -0.155 4.155 25 C -0.144 4.144 26 C -0.152 4.152 27 C -0.142 4.142 28 C -0.143 4.143 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.035 0.965 44 H 0.022 0.978 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.039 0.961 48 H 0.148 0.852 49 H 0.153 0.847 50 H 0.157 0.843 51 H 0.158 0.842 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.170 13.091 -18.956 23.411 hybrid contribution -0.492 -1.376 0.498 1.544 sum 3.678 11.715 -18.458 22.169 Atomic orbital electron populations 1.22051 0.93851 1.01283 1.03059 1.19121 0.95750 0.95164 0.90030 1.22024 1.00354 0.94465 1.03060 1.21807 1.03169 1.00399 0.91002 1.20636 0.79640 0.83591 0.83720 1.90555 1.40030 1.28071 1.85980 1.50315 1.51641 1.30956 1.04817 1.22994 1.02380 0.95301 0.78641 1.22287 0.96928 0.95124 0.95667 1.23107 0.96591 0.88829 0.90902 1.22526 1.00876 0.96234 0.95527 1.20991 0.88330 0.91188 0.93526 1.44844 1.30894 1.06057 1.53293 1.19399 1.08148 0.86157 1.23102 0.90618 1.25540 0.98670 1.01581 0.99688 1.70170 1.23581 1.31962 1.33894 0.85098 0.77701 0.80060 0.77006 1.19415 1.21732 1.22091 1.21117 0.93851 0.87174 0.94371 1.19884 0.97568 0.95800 0.94402 1.21393 0.98531 0.95866 0.99752 1.21436 1.00072 1.00260 0.92682 1.21453 0.98710 0.97021 0.98032 1.21416 0.97779 0.95940 0.99089 1.21145 1.00589 1.00570 0.91968 0.91345 0.91947 0.93781 0.92952 0.92099 0.91254 0.87277 0.88567 0.90703 0.87003 0.86737 0.90503 0.90370 0.88678 0.96510 0.97807 0.94413 0.94964 0.96111 0.85188 0.84686 0.84315 0.84237 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 7.99 71.98 0.58 -2.84 16 2 C 0.00 0.00 0.60 -52.93 -0.03 -0.04 16 3 C -0.14 -3.03 7.99 71.98 0.58 -2.45 16 4 C -0.12 -2.69 3.17 29.85 0.09 -2.59 16 5 C 0.53 14.34 7.47 87.66 0.65 15.00 16 6 O -0.57 -18.04 12.07 -3.05 -0.04 -18.07 16 7 N -0.64 -16.58 3.62 -863.69 -3.12 -19.71 16 8 C 0.13 3.19 8.21 85.90 0.71 3.89 16 9 C -0.10 -2.89 0.99 -52.15 -0.05 -2.94 16 10 C 0.13 3.19 7.92 85.91 0.68 3.87 16 11 C -0.11 -3.51 6.36 31.36 0.20 -3.31 16 12 C 0.18 8.47 5.39 86.80 0.47 8.94 16 13 N -0.62 -30.74 3.41 -693.35 -2.36 -33.10 16 14 C -0.24 -13.14 10.28 84.03 0.86 -12.27 16 15 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 17 N -0.95 -55.40 10.30 21.65 0.22 -55.17 16 18 Si 0.97 45.20 29.55 68.60 2.03 47.22 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 C 0.16 6.26 6.63 86.28 0.57 6.83 16 23 C -0.08 -1.53 4.76 -19.86 -0.09 -1.63 16 24 C -0.14 -2.65 8.98 22.27 0.20 -2.45 16 25 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 26 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 27 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 28 C -0.12 -2.28 8.71 22.27 0.19 -2.08 16 29 H 0.07 1.92 5.51 -2.39 -0.01 1.91 16 30 H 0.06 1.29 7.39 -2.39 -0.02 1.27 16 31 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.16 7.39 -2.39 -0.02 1.14 16 34 H 0.07 1.78 5.51 -2.39 -0.01 1.77 16 35 H 0.11 1.99 7.50 -2.39 -0.02 1.97 16 36 H 0.10 2.08 7.53 -2.38 -0.02 2.06 16 37 H 0.07 1.97 8.12 -2.38 -0.02 1.95 16 38 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.11 2.26 8.04 -2.39 -0.02 2.24 16 40 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 41 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.09 2.41 7.99 -2.39 -0.02 2.39 16 43 H 0.02 0.86 7.39 -2.39 -0.02 0.84 16 44 H 0.00 0.19 7.49 -2.39 -0.02 0.18 16 45 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 46 H 0.03 1.29 8.07 -2.39 -0.02 1.27 16 47 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.13 2.27 5.90 -2.91 -0.02 2.25 16 49 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 50 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 51 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 52 H 0.13 2.04 7.10 -2.91 -0.02 2.02 16 Total: -1.00 -67.97 401.41 4.36 -63.61 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.89 Total: 17.88 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 6.74 Total: -2.66 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -5.26 Total: -107.98 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.04 Total: -18.07 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -67.97 4.36 -63.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073457382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.490 kcal (2) G-P(sol) polarization free energy of solvation -67.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds