Wall clock time and date at job start Wed Apr 1 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46889 * 2 1 4 4 F 1.39902 * 109.46973 * 240.00611 * 2 1 3 5 5 C 1.50690 * 109.47461 * 120.00279 * 2 1 3 6 6 O 1.21286 * 119.99911 * 249.99949 * 5 2 1 7 7 N 1.34783 * 120.00261 * 69.99822 * 5 2 1 8 8 C 1.46923 * 120.62923 * 179.97438 * 7 5 2 9 9 C 1.53196 * 108.77351 * 233.63020 * 8 7 5 10 10 C 1.53038 * 109.31174 * 305.36629 * 9 8 7 11 11 C 1.53001 * 109.45995 * 181.38407 * 10 9 8 12 12 H 1.09002 * 109.48301 * 300.00196 * 11 10 9 13 13 C 1.53093 * 109.48321 * 179.97438 * 11 10 9 14 14 C 1.53178 * 109.16373 * 182.40028 * 13 11 10 15 15 H 1.08997 * 109.54056 * 297.02111 * 14 13 11 16 16 N 1.46498 * 109.54151 * 176.84819 * 14 13 11 17 17 C 1.36943 * 119.99727 * 155.17693 * 16 14 13 18 18 H 1.07998 * 120.00392 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99586 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00460 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99694 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47297 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00129 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00122 * 21 19 17 25 25 C 1.53178 * 109.11069 * 56.93509 * 14 13 11 26 26 C 1.53099 * 109.15641 * 303.15102 * 25 14 13 27 27 O 1.42902 * 109.48802 * 60.02490 * 11 10 9 28 28 C 1.53045 * 109.52498 * 61.37705 * 10 9 8 29 29 C 1.46920 * 120.62544 * 0.02562 * 7 5 2 30 30 H 1.08998 * 109.46498 * 299.99759 * 1 2 3 31 31 H 1.08994 * 109.47022 * 59.99843 * 1 2 3 32 32 H 1.08999 * 109.46953 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47109 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47638 * 300.00119 * 3 2 1 35 35 H 1.08998 * 109.47354 * 60.00765 * 3 2 1 36 36 H 1.09005 * 109.58272 * 113.84747 * 8 7 5 37 37 H 1.08997 * 109.58967 * 353.42047 * 8 7 5 38 38 H 1.09002 * 109.49774 * 185.41761 * 9 8 7 39 39 H 1.08999 * 109.49646 * 65.32085 * 9 8 7 40 40 H 1.09001 * 109.46412 * 301.35833 * 10 9 8 41 41 H 1.08996 * 109.52059 * 62.49057 * 13 11 10 42 42 H 1.09002 * 109.57345 * 302.33753 * 13 11 10 43 43 H 0.96998 * 120.00095 * 335.17152 * 16 14 13 44 44 H 0.97001 * 119.99952 * 359.97438 * 20 19 17 45 45 H 1.08998 * 109.52100 * 62.96721 * 25 14 13 46 46 H 1.09000 * 109.52137 * 183.16122 * 25 14 13 47 47 H 1.08999 * 109.40898 * 297.49349 * 26 25 14 48 48 H 1.09004 * 109.49285 * 177.50477 * 26 25 14 49 49 H 1.08994 * 109.50141 * 58.57699 * 28 10 9 50 50 H 1.09003 * 109.49385 * 178.67610 * 28 10 9 51 51 H 1.08998 * 109.58717 * 246.15327 * 29 7 5 52 52 H 1.09004 * 109.59043 * 6.58286 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7104 1.2303 6 8 2.5733 -0.0816 2.1153 7 7 1.8807 -2.0445 1.3474 8 6 2.3658 -2.7512 2.5407 9 6 3.2824 -3.8958 2.0972 10 6 2.5357 -4.7850 1.1003 11 6 3.4361 -5.9489 0.6814 12 1 4.3404 -5.5590 0.2141 13 6 2.6893 -6.8391 -0.3154 14 6 3.5744 -8.0338 -0.6838 15 1 4.4762 -7.6793 -1.1828 16 7 2.8393 -8.9306 -1.5791 17 6 3.5214 -9.7564 -2.4323 18 1 4.6013 -9.7463 -2.4455 19 6 2.8249 -10.6065 -3.2803 20 7 1.5088 -10.6185 -3.2646 21 14 3.7554 -11.7324 -4.4447 22 1 2.7881 -12.5341 -5.2365 23 1 4.6278 -12.6433 -3.6608 24 1 4.5899 -10.9155 -5.3619 25 6 3.9579 -8.7866 0.5939 26 6 4.6538 -7.8206 1.5565 27 8 3.7885 -6.7175 1.8334 28 6 2.1572 -3.9634 -0.1342 29 6 1.2281 -2.8198 0.2836 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.5190 -3.1552 3.0955 37 1 2.9236 -2.0605 3.1730 38 1 3.5723 -4.4871 2.9658 39 1 4.1734 -3.4852 1.6222 40 1 1.6317 -5.1752 1.5679 41 1 2.4584 -6.2661 -1.2134 42 1 1.7640 -7.1967 0.1363 43 1 1.8694 -8.9395 -1.5674 44 1 1.0256 -10.0335 -2.6602 45 1 3.0595 -9.1848 1.0656 46 1 4.6334 -9.6052 0.3455 47 1 5.5740 -7.4552 1.1006 48 1 4.8896 -8.3398 2.4855 49 1 3.0589 -3.5522 -0.5880 50 1 1.6461 -4.6027 -0.8540 51 1 0.2884 -3.2294 0.6540 52 1 1.0352 -2.1743 -0.5733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075384612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:17 Heat of formation + Delta-G solvation = -148.962732 kcal Electronic energy + Delta-G solvation = -31683.861205 eV Core-core repulsion = 27403.667655 eV Total energy + Delta-G solvation = -4280.193551 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.17210 -41.46220 -40.59141 -38.58910 -37.02498 -35.07588 -34.62267 -34.25231 -32.22072 -31.25336 -30.76239 -28.48632 -27.36785 -25.93836 -24.84369 -24.60262 -23.88200 -22.74889 -21.44440 -21.24341 -20.21577 -19.41468 -18.72054 -17.72751 -17.30202 -17.14291 -17.04450 -16.47592 -16.34529 -15.93402 -15.74201 -15.64392 -15.50083 -15.45338 -14.94839 -14.83479 -14.70798 -14.30289 -14.11418 -13.97943 -13.65537 -13.46104 -13.38568 -13.17264 -13.08061 -13.04777 -12.96001 -12.74763 -12.66059 -12.32425 -12.25974 -12.16504 -11.98669 -11.91813 -11.85919 -11.61585 -11.51900 -11.40257 -11.07938 -10.90700 -10.77519 -10.47877 -9.81236 -9.14901 -8.40831 -5.34934 1.24506 1.56677 1.66228 1.75513 1.82695 2.68251 2.71949 3.00221 3.37169 3.38426 3.43653 3.54219 3.65170 3.75263 3.76862 3.88707 3.92597 4.03065 4.08190 4.16064 4.19663 4.29630 4.32344 4.40205 4.47316 4.55298 4.56035 4.59776 4.64761 4.66593 4.71335 4.77108 4.78326 4.80136 4.85606 4.92194 4.93822 5.01509 5.05432 5.07707 5.11228 5.15234 5.23954 5.36036 5.41555 5.45532 5.57080 6.16694 6.25675 6.48129 6.83827 7.07348 7.97389 8.09259 9.11133 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016092 B = 0.002463 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.540365 B =11366.671630 C =12556.203100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 C -0.156 4.156 4 F -0.198 7.198 5 C 0.495 3.505 6 O -0.563 6.563 7 N -0.597 5.597 8 C 0.110 3.890 9 C -0.115 4.115 10 C -0.070 4.070 11 C 0.107 3.893 12 H 0.055 0.945 13 C -0.142 4.142 14 C 0.175 3.825 15 H 0.036 0.964 16 N -0.747 5.747 17 C -0.329 4.329 18 H 0.063 0.937 19 C -0.104 4.104 20 N -0.975 5.975 21 Si 1.126 2.874 22 H -0.292 1.292 23 H -0.279 1.279 24 H -0.278 1.278 25 C -0.163 4.163 26 C 0.072 3.928 27 O -0.384 6.384 28 C -0.127 4.127 29 C 0.091 3.909 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.359 0.641 44 H 0.244 0.756 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.109 0.891 49 H 0.062 0.938 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 22.971 10.569 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.078 3.922 3 C -0.214 4.214 4 F -0.178 7.178 5 C 0.282 3.718 6 O -0.443 6.443 7 N -0.329 5.329 8 C -0.011 4.011 9 C -0.154 4.154 10 C -0.088 4.088 11 C 0.049 3.951 12 H 0.073 0.927 13 C -0.180 4.180 14 C 0.066 3.934 15 H 0.054 0.946 16 N -0.389 5.389 17 C -0.461 4.461 18 H 0.081 0.919 19 C -0.295 4.295 20 N -0.623 5.623 21 Si 0.950 3.050 22 H -0.218 1.218 23 H -0.205 1.205 24 H -0.204 1.204 25 C -0.203 4.203 26 C -0.005 4.005 27 O -0.303 6.303 28 C -0.166 4.166 29 C -0.031 4.031 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.191 0.809 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.127 0.873 49 H 0.081 0.919 50 H 0.105 0.895 51 H 0.110 0.890 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.765 22.159 10.003 24.325 hybrid contribution 0.130 0.440 0.751 0.880 sum -0.634 22.600 10.754 25.036 Atomic orbital electron populations 1.22544 0.89054 1.05450 1.06122 1.21330 0.98220 0.93420 0.79215 1.22186 1.02237 0.91785 1.05181 1.92841 1.90487 1.82330 1.52187 1.21304 0.78870 0.82674 0.88975 1.90692 1.44215 1.66207 1.43140 1.48265 1.57611 1.06266 1.20766 1.21720 0.98715 0.93932 0.86772 1.21799 0.97775 0.95767 1.00013 1.21067 0.98432 0.92891 0.96429 1.22033 0.96746 0.90599 0.85698 0.92722 1.22424 0.99259 0.96557 0.99801 1.20395 0.94057 0.89643 0.89283 0.94584 1.42623 1.04592 1.46720 1.44938 1.20338 0.92187 1.17421 1.16137 0.91853 1.27162 0.97102 1.02451 1.02819 1.70991 1.07208 1.42573 1.41532 0.82654 0.73437 0.74518 0.74353 1.21847 1.20504 1.20367 1.22746 1.00550 0.99423 0.97612 1.22568 0.91690 0.86585 0.99635 1.87828 1.68028 1.42272 1.32183 1.21941 1.00499 0.96816 0.97295 1.22348 0.95802 0.93907 0.91033 0.89190 0.88031 0.89951 0.92333 0.88405 0.89502 0.89506 0.89961 0.89403 0.92649 0.89720 0.90720 0.91933 0.80877 0.94525 0.93228 0.92830 0.92745 0.87264 0.91917 0.89534 0.89024 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 8.60 71.98 0.62 -1.05 16 2 C 0.10 1.56 1.20 -11.54 -0.01 1.55 16 3 C -0.16 -2.17 8.28 71.98 0.60 -1.57 16 4 F -0.20 -3.65 14.33 44.97 0.64 -3.01 16 5 C 0.50 10.45 6.77 87.65 0.59 11.04 16 6 O -0.56 -15.40 15.39 -3.05 -0.05 -15.44 16 7 N -0.60 -11.14 2.97 -818.99 -2.43 -13.58 16 8 C 0.11 2.02 6.43 86.36 0.56 2.58 16 9 C -0.12 -2.23 5.23 30.67 0.16 -2.07 16 10 C -0.07 -1.43 1.95 -10.77 -0.02 -1.45 16 11 C 0.11 2.78 2.22 30.63 0.07 2.85 16 12 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 13 C -0.14 -4.49 4.47 30.68 0.14 -4.35 16 14 C 0.17 6.91 2.86 45.11 0.13 7.04 16 15 H 0.04 1.49 8.08 -2.39 -0.02 1.48 16 16 N -0.75 -37.64 5.13 -322.38 -1.65 -39.30 16 17 C -0.33 -18.52 9.93 84.03 0.83 -17.68 16 18 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 19 C -0.10 -6.05 5.50 84.86 0.47 -5.58 16 20 N -0.98 -61.00 13.70 21.65 0.30 -60.70 16 21 Si 1.13 51.92 29.92 68.60 2.05 53.98 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 C -0.16 -5.82 5.73 30.69 0.18 -5.65 16 26 C 0.07 1.99 6.84 72.02 0.49 2.48 16 27 O -0.38 -10.59 9.71 -148.98 -1.45 -12.03 16 28 C -0.13 -2.40 5.04 30.66 0.15 -2.25 16 29 C 0.09 1.41 4.88 86.35 0.42 1.83 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.73 5.99 -2.39 -0.01 0.71 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.16 7.99 -2.39 -0.02 1.14 16 36 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.08 1.71 7.00 -2.39 -0.02 1.69 16 38 H 0.09 1.70 7.64 -2.39 -0.02 1.69 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 2.33 6.54 -2.39 -0.02 2.31 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.36 18.90 6.63 -92.71 -0.61 18.28 16 44 H 0.24 15.20 6.77 -92.71 -0.63 14.57 16 45 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 46 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.09 1.67 6.42 -2.39 -0.02 1.65 16 51 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.11 1.63 3.86 -2.39 -0.01 1.62 16 Total: -1.00 -71.50 395.30 3.22 -68.29 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.44 Total: 34.07 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 5.37 Total: -12.28 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -3.79 Total: -113.57 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.49 Total: -27.48 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.64 Total: -3.01 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.05 Total: 53.98 kcal Total: -71.50 3.22 -68.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075384612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.677 kcal (2) G-P(sol) polarization free energy of solvation -71.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds