Wall clock time and date at job start Wed Apr 1 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47101 * 2 1 4 4 F 1.39908 * 109.47016 * 240.00553 * 2 1 3 5 5 C 1.50700 * 109.47443 * 120.00371 * 2 1 3 6 6 O 1.21283 * 119.99803 * 249.99837 * 5 2 1 7 7 N 1.34777 * 119.99675 * 70.27712 * 5 2 1 8 8 C 1.46921 * 120.63392 * 359.43977 * 7 5 2 9 9 C 1.52760 * 109.00994 * 233.58899 * 8 7 5 10 10 C 1.53036 * 109.38235 * 305.58739 * 9 8 7 11 11 C 1.53005 * 109.44889 * 181.25525 * 10 9 8 12 12 H 1.09000 * 109.48122 * 299.96303 * 11 10 9 13 13 C 1.53094 * 109.48020 * 59.99675 * 11 10 9 14 14 C 1.53174 * 109.16436 * 177.59350 * 13 11 10 15 15 H 1.08995 * 109.54412 * 62.88304 * 14 13 11 16 16 N 1.46496 * 109.61534 * 183.10993 * 14 13 11 17 17 C 1.36946 * 119.99824 * 204.59751 * 16 14 13 18 18 H 1.08003 * 119.99765 * 0.02562 * 17 16 14 19 19 C 1.38804 * 120.00030 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99914 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99989 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47237 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47345 * 119.99792 * 21 19 17 24 24 H 1.48503 * 109.46997 * 240.00030 * 21 19 17 25 25 C 1.53182 * 109.03369 * 303.01897 * 14 13 11 26 26 C 1.53087 * 109.16320 * 56.98246 * 25 14 13 27 27 O 1.42900 * 109.47911 * 179.97438 * 11 10 9 28 28 C 1.53035 * 109.53955 * 61.24292 * 10 9 8 29 29 C 1.46924 * 120.62813 * 179.72946 * 7 5 2 30 30 H 1.09002 * 109.46827 * 299.99216 * 1 2 3 31 31 H 1.08996 * 109.47137 * 59.99869 * 1 2 3 32 32 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46794 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47136 * 300.00620 * 3 2 1 35 35 H 1.09002 * 109.46640 * 60.00669 * 3 2 1 36 36 H 1.09004 * 109.58490 * 353.42409 * 8 7 5 37 37 H 1.09002 * 109.58518 * 113.84767 * 8 7 5 38 38 H 1.09005 * 109.56000 * 185.55371 * 9 8 7 39 39 H 1.09001 * 109.36136 * 65.50440 * 9 8 7 40 40 H 1.09002 * 109.46377 * 301.22063 * 10 9 8 41 41 H 1.09002 * 109.51936 * 297.50248 * 13 11 10 42 42 H 1.09001 * 109.52050 * 57.68339 * 13 11 10 43 43 H 0.96998 * 120.00769 * 24.59961 * 16 14 13 44 44 H 0.97004 * 119.99545 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.52104 * 297.07078 * 25 14 13 46 46 H 1.09000 * 109.52116 * 176.88877 * 25 14 13 47 47 H 1.08997 * 109.48053 * 182.40778 * 26 25 14 48 48 H 1.08997 * 109.49431 * 62.37616 * 26 25 14 49 49 H 1.08994 * 109.50277 * 178.68099 * 28 10 9 50 50 H 1.08997 * 109.49664 * 58.58032 * 28 10 9 51 51 H 1.09006 * 109.58353 * 246.15683 * 29 7 5 52 52 H 1.09004 * 109.59032 * 6.43097 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2304 6 8 2.5733 -0.0817 2.1153 7 7 1.8857 -2.0453 1.3448 8 6 1.2271 -2.8198 0.2841 9 6 0.0968 -3.6436 0.8981 10 6 0.6517 -4.4924 2.0443 11 6 -0.4730 -5.3416 2.6401 12 1 -1.2593 -4.6891 3.0195 13 6 -1.0483 -6.2589 1.5578 14 6 -2.1319 -7.1477 2.1758 15 1 -2.9497 -6.5260 2.5399 16 7 -2.6376 -8.0809 1.1661 17 6 -3.8955 -8.6080 1.2898 18 1 -4.5148 -8.3354 2.1316 19 6 -4.3749 -9.4917 0.3328 20 7 -3.6207 -9.8226 -0.6939 21 14 -6.0909 -10.2102 0.5012 22 1 -6.7297 -9.6827 1.7337 23 1 -6.9053 -9.8293 -0.6808 24 1 -6.0019 -11.6902 0.5850 25 6 -1.5272 -7.9341 3.3431 26 6 -0.9334 -6.9522 4.3564 27 8 0.0446 -6.1349 3.7101 28 6 1.2275 -3.5768 3.1269 29 6 2.3756 -2.7529 2.5356 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 0.8178 -2.1405 -0.4638 37 1 1.9505 -3.4880 -0.1832 38 1 -0.3341 -4.2956 0.1381 39 1 -0.6723 -2.9729 1.2812 40 1 1.4378 -5.1454 1.6651 41 1 -1.4832 -5.6545 0.7617 42 1 -0.2538 -6.8835 1.1495 43 1 -2.0816 -8.3254 0.4098 44 1 -3.9557 -10.4405 -1.3625 45 1 -0.7424 -8.5926 2.9709 46 1 -2.3046 -8.5280 3.8238 47 1 -0.4639 -7.5075 5.1684 48 1 -1.7257 -6.3208 4.7584 49 1 1.6013 -4.1811 3.9534 50 1 0.4478 -2.9067 3.4891 51 1 3.1946 -3.4155 2.2557 52 1 2.7262 -2.0297 3.2720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075384613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:20 Heat of formation + Delta-G solvation = -148.091914 kcal Electronic energy + Delta-G solvation = -31648.895246 eV Core-core repulsion = 27368.739456 eV Total energy + Delta-G solvation = -4280.155789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.09583 -41.45497 -40.50774 -38.53758 -36.74187 -35.02158 -34.63679 -34.06190 -32.19763 -31.24181 -30.92324 -28.46949 -27.39974 -26.07054 -24.71934 -24.52153 -23.74042 -22.66780 -21.43401 -21.14374 -20.08390 -19.18295 -18.73717 -17.64578 -17.17684 -17.09497 -16.98063 -16.46289 -16.27214 -15.83669 -15.67352 -15.64627 -15.45199 -15.20640 -14.80997 -14.71340 -14.62864 -14.26129 -14.08443 -13.99916 -13.67283 -13.45021 -13.31330 -13.13921 -13.10374 -12.98393 -12.96004 -12.90218 -12.61083 -12.30438 -12.22965 -12.18572 -12.06781 -11.94914 -11.87112 -11.73127 -11.53313 -11.41802 -11.04686 -10.88925 -10.76674 -10.39937 -9.78943 -9.02082 -7.95351 -5.23929 1.27230 1.46557 1.46942 1.56684 1.76889 2.54587 2.79760 3.02207 3.37560 3.39992 3.53664 3.56871 3.69920 3.76033 3.92041 3.94700 4.03134 4.09548 4.16665 4.23768 4.26699 4.35161 4.41914 4.47361 4.53943 4.56787 4.57182 4.65199 4.67029 4.77068 4.77652 4.84176 4.84657 4.87737 4.90341 4.96645 5.02533 5.07017 5.09055 5.14309 5.15486 5.22235 5.34327 5.43955 5.48190 5.49773 5.55601 6.18924 6.26863 6.35522 6.85832 7.32957 8.08529 8.31975 9.28230 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.002450 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.714959 B =11426.307887 C =12622.528057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 C -0.156 4.156 4 F -0.199 7.199 5 C 0.495 3.505 6 O -0.563 6.563 7 N -0.597 5.597 8 C 0.096 3.904 9 C -0.129 4.129 10 C -0.071 4.071 11 C 0.108 3.892 12 H 0.061 0.939 13 C -0.142 4.142 14 C 0.170 3.830 15 H 0.042 0.958 16 N -0.736 5.736 17 C -0.236 4.236 18 H 0.074 0.926 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.293 1.293 24 H -0.296 1.296 25 C -0.165 4.165 26 C 0.072 3.928 27 O -0.387 6.387 28 C -0.113 4.113 29 C 0.109 3.891 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.372 0.628 44 H 0.250 0.750 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.106 0.894 48 H 0.057 0.943 49 H 0.086 0.914 50 H 0.063 0.937 51 H 0.078 0.922 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.983 21.116 4.264 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.080 3.920 3 C -0.213 4.213 4 F -0.179 7.179 5 C 0.282 3.718 6 O -0.443 6.443 7 N -0.329 5.329 8 C -0.026 4.026 9 C -0.167 4.167 10 C -0.090 4.090 11 C 0.050 3.950 12 H 0.079 0.921 13 C -0.181 4.181 14 C 0.062 3.938 15 H 0.060 0.940 16 N -0.375 5.375 17 C -0.368 4.368 18 H 0.092 0.908 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.799 3.201 22 H -0.191 1.191 23 H -0.220 1.220 24 H -0.223 1.223 25 C -0.205 4.205 26 C -0.005 4.005 27 O -0.306 6.306 28 C -0.151 4.151 29 C -0.012 4.012 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.204 0.796 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.124 0.876 48 H 0.075 0.925 49 H 0.104 0.896 50 H 0.082 0.918 51 H 0.096 0.904 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.291 21.393 4.831 24.668 hybrid contribution -0.940 -1.329 -0.533 1.713 sum 10.351 20.064 4.298 22.982 Atomic orbital electron populations 1.22608 0.89482 1.05384 1.06104 1.21281 0.97883 0.93497 0.79323 1.22183 1.02345 0.91706 1.05113 1.92884 1.90457 1.82598 1.52007 1.21301 0.78959 0.82560 0.88992 1.90690 1.44378 1.66151 1.43032 1.48257 1.57302 1.06309 1.21006 1.22155 0.95235 0.95784 0.89387 1.21951 0.97916 0.98713 0.98167 1.21061 0.96817 0.95639 0.95482 1.22045 0.95608 0.90880 0.86492 0.92074 1.22424 0.98081 0.98412 0.99168 1.20461 0.93999 0.90210 0.89168 0.94036 1.42630 1.15340 1.52730 1.26803 1.19621 0.92237 1.19282 1.05673 0.90796 1.25527 1.02128 1.01647 0.97527 1.69822 1.38263 1.39614 1.14313 0.85128 0.80042 0.77504 0.77436 1.19058 1.22012 1.22290 1.22777 0.99963 0.99417 0.98373 1.22563 0.91842 0.91937 0.94140 1.87828 1.36159 1.58196 1.48439 1.21779 0.97654 0.97493 0.98166 1.21714 0.96811 0.95686 0.87032 0.89367 0.87965 0.89979 0.92049 0.88418 0.89692 0.87244 0.90215 0.89270 0.90559 0.90402 0.90400 0.92347 0.79631 0.94076 0.93404 0.92679 0.87642 0.92487 0.89593 0.91795 0.90378 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.57 71.98 0.62 -1.36 16 2 C 0.10 1.62 1.20 -11.54 -0.01 1.60 16 3 C -0.16 -2.15 8.28 71.98 0.60 -1.55 16 4 F -0.20 -3.53 14.61 44.97 0.66 -2.88 16 5 C 0.50 10.52 6.77 87.66 0.59 11.12 16 6 O -0.56 -15.43 15.39 -3.04 -0.05 -15.48 16 7 N -0.60 -11.28 2.98 -819.73 -2.44 -13.72 16 8 C 0.10 1.53 5.09 86.22 0.44 1.97 16 9 C -0.13 -2.16 4.92 30.53 0.15 -2.01 16 10 C -0.07 -1.39 1.95 -10.77 -0.02 -1.41 16 11 C 0.11 2.62 2.22 30.63 0.07 2.68 16 12 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 13 C -0.14 -4.32 4.47 30.68 0.14 -4.18 16 14 C 0.17 6.44 2.86 45.11 0.13 6.57 16 15 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 16 N -0.74 -36.28 5.13 -322.38 -1.65 -37.93 16 17 C -0.24 -12.85 9.93 84.03 0.83 -12.02 16 18 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 19 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.97 -58.68 13.06 21.65 0.28 -58.40 16 21 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 C -0.16 -5.69 5.72 30.68 0.18 -5.51 16 26 C 0.07 1.90 6.84 72.01 0.49 2.39 16 27 O -0.39 -10.30 9.71 -148.98 -1.45 -11.75 16 28 C -0.11 -2.05 5.23 30.67 0.16 -1.89 16 29 C 0.11 2.03 6.43 86.36 0.56 2.59 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.91 5.48 -2.39 -0.01 0.89 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 1.16 7.99 -2.39 -0.02 1.14 16 36 H 0.11 1.55 3.61 -2.38 -0.01 1.55 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.55 6.42 -2.38 -0.02 1.54 16 39 H 0.08 1.20 7.98 -2.39 -0.02 1.18 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 2.29 6.54 -2.39 -0.02 2.27 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.37 19.84 7.80 -92.71 -0.72 19.11 16 44 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.09 1.61 7.64 -2.39 -0.02 1.59 16 50 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 52 H 0.08 1.73 7.00 -2.38 -0.02 1.72 16 Total: -1.00 -67.77 396.42 2.94 -64.83 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.19 Total: 32.62 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 5.38 Total: -4.86 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -3.81 Total: -110.05 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.49 Total: -27.23 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.66 Total: -2.88 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -67.77 2.94 -64.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075384613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.262 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds