Wall clock time and date at job start Wed Apr 1 2020 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47047 * 2 1 4 4 F 1.39904 * 109.46961 * 240.00381 * 2 1 3 5 5 C 1.50703 * 109.47304 * 120.00521 * 2 1 3 6 6 O 1.21278 * 119.99791 * 249.99273 * 5 2 1 7 7 N 1.34770 * 119.99793 * 69.99992 * 5 2 1 8 8 C 1.46930 * 120.62845 * 179.97438 * 7 5 2 9 9 C 1.53187 * 108.77817 * 233.62936 * 8 7 5 10 10 C 1.53044 * 109.31024 * 305.36603 * 9 8 7 11 11 C 1.53001 * 109.45739 * 181.38674 * 10 9 8 12 12 H 1.09000 * 109.49561 * 60.02516 * 11 10 9 13 13 C 1.53098 * 109.47861 * 180.02562 * 11 10 9 14 14 C 1.53180 * 109.16075 * 177.59094 * 13 11 10 15 15 H 1.09005 * 109.54069 * 183.15152 * 14 13 11 16 16 N 1.46496 * 109.61951 * 62.93169 * 14 13 11 17 17 C 1.36938 * 120.00201 * 155.40040 * 16 14 13 18 18 H 1.08001 * 119.99761 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99857 * 179.97438 * 17 16 14 20 20 N 1.31615 * 119.99910 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99773 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47224 * 90.00008 * 21 19 17 23 23 H 1.48505 * 109.47271 * 209.99816 * 21 19 17 24 24 H 1.48499 * 109.47079 * 329.99857 * 21 19 17 25 25 C 1.53175 * 109.03606 * 303.01560 * 14 13 11 26 26 C 1.53092 * 109.16344 * 56.98567 * 25 14 13 27 27 O 1.42905 * 109.48128 * 299.99412 * 11 10 9 28 28 C 1.53035 * 109.54160 * 61.36598 * 10 9 8 29 29 C 1.46923 * 120.63366 * 0.02562 * 7 5 2 30 30 H 1.09003 * 109.46772 * 299.99069 * 1 2 3 31 31 H 1.08993 * 109.47463 * 59.99488 * 1 2 3 32 32 H 1.09004 * 109.47446 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46878 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47147 * 300.00491 * 3 2 1 35 35 H 1.09001 * 109.47090 * 60.00882 * 3 2 1 36 36 H 1.09002 * 109.59050 * 113.83856 * 8 7 5 37 37 H 1.09003 * 109.58471 * 353.41899 * 8 7 5 38 38 H 1.08995 * 109.50443 * 185.41105 * 9 8 7 39 39 H 1.09004 * 109.52488 * 65.32682 * 9 8 7 40 40 H 1.08997 * 109.45891 * 301.35160 * 10 9 8 41 41 H 1.08996 * 109.52270 * 57.68339 * 13 11 10 42 42 H 1.08995 * 109.57012 * 297.52187 * 13 11 10 43 43 H 0.97004 * 119.99614 * 335.39244 * 16 14 13 44 44 H 0.97006 * 119.99545 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.52714 * 297.07587 * 25 14 13 46 46 H 1.08998 * 109.52443 * 176.88852 * 25 14 13 47 47 H 1.08997 * 109.48111 * 182.40965 * 26 25 14 48 48 H 1.09000 * 109.48212 * 62.37239 * 26 25 14 49 49 H 1.08998 * 109.50026 * 58.58566 * 28 10 9 50 50 H 1.09000 * 109.49963 * 178.68532 * 28 10 9 51 51 H 1.09003 * 109.58534 * 246.15566 * 29 7 5 52 52 H 1.08994 * 109.58895 * 6.58358 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2304 6 8 2.5733 -0.0818 2.1153 7 7 1.8806 -2.0445 1.3473 8 6 2.3657 -2.7514 2.5406 9 6 3.2822 -3.8960 2.0972 10 6 2.5355 -4.7850 1.1001 11 6 3.4359 -5.9490 0.6814 12 1 3.7046 -6.5354 1.5600 13 6 2.6896 -6.8384 -0.3166 14 6 3.6179 -7.9666 -0.7767 15 1 3.1118 -8.5711 -1.5295 16 7 3.9748 -8.8078 0.3684 17 6 4.3496 -10.1100 0.1710 18 1 4.3817 -10.5170 -0.8289 19 6 4.6882 -10.9068 1.2560 20 7 4.6495 -10.4106 2.4744 21 14 5.1988 -12.6834 0.9867 22 1 6.6697 -12.7519 0.7939 23 1 4.8166 -13.4933 2.1713 24 1 4.5161 -13.2173 -0.2191 25 6 4.8868 -7.3553 -1.3787 26 6 5.5483 -6.4460 -0.3398 27 8 4.6215 -5.4379 0.0687 28 6 2.1568 -3.9637 -0.1343 29 6 1.2281 -2.8198 0.2835 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6765 1.9563 -0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.5189 -3.1554 3.0955 37 1 2.9235 -2.0606 3.1729 38 1 3.5722 -4.4873 2.9657 39 1 4.1735 -3.4858 1.6223 40 1 1.6316 -5.1753 1.5678 41 1 2.3847 -6.2435 -1.1775 42 1 1.8081 -7.2645 0.1624 43 1 3.9456 -8.4422 1.2664 44 1 4.8866 -10.9674 3.2325 45 1 4.6264 -6.7709 -2.2612 46 1 5.5772 -8.1510 -1.6585 47 1 6.4285 -5.9748 -0.7771 48 1 5.8450 -7.0386 0.5256 49 1 3.0583 -3.5525 -0.5884 50 1 1.6456 -4.6031 -0.8540 51 1 0.2883 -3.2295 0.6539 52 1 1.0352 -2.1744 -0.5733 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075384614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:23 Heat of formation + Delta-G solvation = -144.650255 kcal Electronic energy + Delta-G solvation = -32186.017959 eV Core-core repulsion = 27906.011411 eV Total energy + Delta-G solvation = -4280.006548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.12274 -41.43171 -40.58000 -38.48305 -36.51627 -34.98711 -34.51138 -34.03848 -32.17771 -31.11149 -30.83728 -28.45077 -27.37546 -25.89920 -25.00400 -24.48535 -24.34224 -22.81589 -21.35905 -20.28548 -20.09669 -19.25039 -18.65274 -17.58968 -17.12066 -16.97114 -16.74903 -16.67503 -16.31086 -15.89496 -15.69996 -15.56265 -15.46087 -15.38970 -14.83613 -14.70751 -14.55819 -14.17418 -13.89544 -13.69594 -13.61293 -13.40706 -13.31849 -13.16617 -13.12841 -12.99100 -12.91951 -12.85295 -12.69860 -12.50821 -12.22772 -12.15315 -12.10236 -11.93705 -11.87491 -11.64313 -11.52794 -11.32336 -10.99202 -10.90821 -10.69398 -10.19787 -9.73983 -8.99801 -7.94412 -5.21871 1.29390 1.46290 1.46984 1.55272 1.81540 2.55534 2.91875 3.05103 3.38699 3.42192 3.57820 3.63231 3.73138 3.79546 3.86002 3.94730 4.09973 4.13412 4.21844 4.28052 4.32004 4.39357 4.44124 4.50287 4.57992 4.59654 4.63049 4.67432 4.69748 4.77262 4.79073 4.85332 4.88590 4.94251 4.95997 5.04298 5.09406 5.10212 5.14947 5.19318 5.22881 5.27042 5.33180 5.38137 5.49019 5.51614 5.55663 6.23763 6.28193 6.39525 6.89127 7.34448 8.10586 8.33683 9.29002 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.025641 B = 0.002444 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.757900 B =11453.269248 C =11770.650904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.102 3.898 3 C -0.157 4.157 4 F -0.197 7.197 5 C 0.492 3.508 6 O -0.568 6.568 7 N -0.596 5.596 8 C 0.113 3.887 9 C -0.120 4.120 10 C -0.070 4.070 11 C 0.102 3.898 12 H 0.030 0.970 13 C -0.142 4.142 14 C 0.162 3.838 15 H 0.047 0.953 16 N -0.732 5.732 17 C -0.235 4.235 18 H 0.074 0.926 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.968 3.032 22 H -0.291 1.291 23 H -0.297 1.297 24 H -0.270 1.270 25 C -0.161 4.161 26 C 0.074 3.926 27 O -0.383 6.383 28 C -0.119 4.119 29 C 0.087 3.913 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.372 0.628 44 H 0.249 0.751 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.097 0.903 48 H 0.023 0.977 49 H 0.056 0.944 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 22.325 -7.424 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.080 3.920 3 C -0.214 4.214 4 F -0.177 7.177 5 C 0.279 3.721 6 O -0.448 6.448 7 N -0.327 5.327 8 C -0.009 4.009 9 C -0.158 4.158 10 C -0.089 4.089 11 C 0.044 3.956 12 H 0.048 0.952 13 C -0.180 4.180 14 C 0.054 3.946 15 H 0.065 0.935 16 N -0.373 5.373 17 C -0.367 4.367 18 H 0.092 0.908 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.798 3.202 22 H -0.218 1.218 23 H -0.224 1.224 24 H -0.195 1.195 25 C -0.201 4.201 26 C -0.003 4.003 27 O -0.302 6.302 28 C -0.156 4.156 29 C -0.034 4.034 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.205 0.795 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.115 0.885 48 H 0.042 0.958 49 H 0.075 0.925 50 H 0.113 0.887 51 H 0.113 0.887 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.427 22.644 -7.114 26.343 hybrid contribution 1.069 -1.775 0.646 2.170 sum -10.358 20.870 -6.468 24.180 Atomic orbital electron populations 1.22537 0.88761 1.05597 1.06106 1.21303 0.98361 0.93226 0.79079 1.22188 1.02118 0.91936 1.05192 1.92840 1.90520 1.82306 1.52050 1.21394 0.78901 0.82729 0.89084 1.90688 1.44396 1.66347 1.43353 1.48257 1.57465 1.06267 1.20745 1.21661 0.98571 0.93763 0.86938 1.21804 0.98329 0.96378 0.99336 1.21187 0.97481 0.93732 0.96466 1.21983 0.85502 0.94184 0.93888 0.95207 1.22396 0.98399 0.96553 1.00607 1.20528 0.93333 0.91011 0.89751 0.93491 1.42657 1.80777 1.09219 1.04632 1.19598 1.35475 0.88666 0.92915 0.90803 1.25478 1.03890 1.02159 0.95222 1.69806 1.57052 1.37052 0.98132 0.85218 0.77714 0.80554 0.76756 1.21810 1.22420 1.19453 1.22627 0.99798 0.98921 0.98732 1.22332 0.91831 0.89642 0.96466 1.87805 1.30262 1.32864 1.79305 1.21862 0.99982 0.96585 0.97217 1.22452 0.95936 0.94165 0.90841 0.89378 0.87820 0.89693 0.92612 0.88172 0.89620 0.89151 0.90516 0.90981 0.92923 0.88433 0.88488 0.91030 0.79505 0.94182 0.90227 0.92892 0.88530 0.95825 0.92473 0.88668 0.88683 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 8.60 71.98 0.62 -0.97 16 2 C 0.10 1.66 1.20 -11.54 -0.01 1.65 16 3 C -0.16 -2.30 8.28 71.98 0.60 -1.71 16 4 F -0.20 -3.68 14.33 44.97 0.64 -3.03 16 5 C 0.49 11.30 6.77 87.66 0.59 11.90 16 6 O -0.57 -16.99 15.39 -3.02 -0.05 -17.04 16 7 N -0.60 -12.30 2.97 -819.00 -2.43 -14.73 16 8 C 0.11 2.45 6.43 86.36 0.56 3.01 16 9 C -0.12 -2.98 5.19 30.67 0.16 -2.82 16 10 C -0.07 -1.65 2.04 -10.77 -0.02 -1.67 16 11 C 0.10 3.16 2.20 30.63 0.07 3.22 16 12 H 0.03 1.14 6.72 -2.39 -0.02 1.12 16 13 C -0.14 -4.24 4.79 30.69 0.15 -4.10 16 14 C 0.16 6.12 3.13 45.11 0.14 6.26 16 15 H 0.05 1.80 8.08 -2.38 -0.02 1.78 16 16 N -0.73 -35.56 4.45 -322.38 -1.43 -36.99 16 17 C -0.23 -12.72 9.93 84.03 0.83 -11.89 16 18 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 19 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 20 N -0.97 -58.77 13.06 21.65 0.28 -58.48 16 21 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 C -0.16 -5.54 5.81 30.68 0.18 -5.36 16 26 C 0.07 2.60 6.68 72.01 0.48 3.08 16 27 O -0.38 -12.72 9.12 -148.98 -1.36 -14.08 16 28 C -0.12 -2.34 4.88 30.66 0.15 -2.19 16 29 C 0.09 1.37 4.88 86.35 0.42 1.79 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.67 5.99 -2.38 -0.01 0.66 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.23 7.99 -2.39 -0.02 1.21 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.92 7.01 -2.39 -0.02 1.90 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.05 1.55 7.73 -2.39 -0.02 1.53 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.10 2.37 6.28 -2.39 -0.02 2.35 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.37 19.57 6.28 -92.71 -0.58 18.99 16 44 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 48 H 0.02 0.99 7.75 -2.39 -0.02 0.98 16 49 H 0.06 1.41 7.73 -2.39 -0.02 1.39 16 50 H 0.10 1.60 6.31 -2.39 -0.02 1.58 16 51 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.11 1.57 3.86 -2.39 -0.01 1.56 16 Total: -1.00 -69.47 392.07 3.39 -66.09 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.33 Total: 33.96 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 5.37 Total: -3.60 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -3.59 Total: -110.21 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.40 Total: -31.12 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.64 Total: -3.03 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -69.47 3.39 -66.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075384614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.564 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds