Wall clock time and date at job start Wed Apr 1 2020 02:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46884 * 2 1 4 4 F 1.39902 * 109.46466 * 240.00447 * 2 1 3 5 5 C 1.50697 * 109.47210 * 120.00408 * 2 1 3 6 6 O 1.21283 * 119.99845 * 249.99981 * 5 2 1 7 7 N 1.34775 * 120.00023 * 70.00173 * 5 2 1 8 8 C 1.46920 * 120.63063 * 180.02562 * 7 5 2 9 9 C 1.53197 * 108.77594 * 233.58463 * 8 7 5 10 10 C 1.53032 * 109.30900 * 305.36373 * 9 8 7 11 11 C 1.53005 * 109.45708 * 181.38496 * 10 9 8 12 12 H 1.08998 * 109.47918 * 305.74302 * 11 10 9 13 13 O 1.42909 * 109.47952 * 185.71024 * 11 10 9 14 14 C 1.42906 * 114.09445 * 178.85982 * 13 11 10 15 15 C 1.53091 * 109.41764 * 61.15610 * 14 13 11 16 16 C 1.53170 * 109.16288 * 302.39134 * 15 14 13 17 17 C 1.53089 * 109.48145 * 65.76790 * 11 10 9 18 18 H 1.09004 * 109.52393 * 297.55917 * 17 11 10 19 19 N 1.46500 * 109.52339 * 57.68366 * 17 11 10 20 20 C 1.36942 * 120.00082 * 201.69294 * 19 17 11 21 21 H 1.08005 * 119.99464 * 0.02562 * 20 19 17 22 22 C 1.38807 * 120.00025 * 180.02562 * 20 19 17 23 23 N 1.31619 * 119.99820 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99853 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46885 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.47219 * 59.99999 * 24 22 20 27 27 H 1.48497 * 109.47119 * 299.99701 * 24 22 20 28 28 C 1.53039 * 109.54254 * 61.36876 * 10 9 8 29 29 C 1.46921 * 120.63108 * 359.97397 * 7 5 2 30 30 H 1.09004 * 109.46964 * 299.99230 * 1 2 3 31 31 H 1.08990 * 109.47135 * 59.99594 * 1 2 3 32 32 H 1.08999 * 109.47082 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46806 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47016 * 300.00584 * 3 2 1 35 35 H 1.09004 * 109.46692 * 60.00603 * 3 2 1 36 36 H 1.08999 * 109.59258 * 113.79733 * 8 7 5 37 37 H 1.09003 * 109.59018 * 353.36840 * 8 7 5 38 38 H 1.09005 * 109.49715 * 185.41185 * 9 8 7 39 39 H 1.08998 * 109.52218 * 65.33219 * 9 8 7 40 40 H 1.09006 * 109.46537 * 301.35295 * 10 9 8 41 41 H 1.09004 * 109.48029 * 181.13793 * 14 13 11 42 42 H 1.09001 * 109.48178 * 301.16852 * 14 13 11 43 43 H 1.09010 * 109.51837 * 62.29600 * 15 14 13 44 44 H 1.08992 * 109.52311 * 182.41754 * 15 14 13 45 45 H 1.09000 * 109.54435 * 297.10862 * 16 15 14 46 46 H 1.09001 * 109.54294 * 176.84632 * 16 15 14 47 47 H 0.96993 * 120.00065 * 21.69952 * 19 17 11 48 48 H 0.96999 * 120.00563 * 0.02562 * 23 22 20 49 49 H 1.09001 * 109.49880 * 58.57942 * 28 10 9 50 50 H 1.08999 * 109.50025 * 178.68253 * 28 10 9 51 51 H 1.09007 * 109.58663 * 246.20217 * 29 7 5 52 52 H 1.09006 * 109.59182 * 6.62502 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2304 6 8 2.5733 -0.0817 2.1153 7 7 1.8807 -2.0445 1.3473 8 6 2.3647 -2.7512 2.5410 9 6 3.2809 -3.8964 2.0985 10 6 2.5342 -4.7854 1.1015 11 6 3.4342 -5.9500 0.6835 12 1 4.3817 -5.5613 0.3103 13 8 2.7902 -6.7047 -0.3450 14 6 3.5601 -7.8072 -0.8288 15 6 3.8245 -8.7857 0.3185 16 6 4.5450 -8.0490 1.4517 17 6 3.6935 -6.8539 1.8915 18 1 4.2232 -6.2914 2.6604 19 7 2.4170 -7.3330 2.4274 20 6 2.3393 -7.7710 3.7226 21 1 3.2191 -7.7627 4.3491 22 6 1.1300 -8.2254 4.2302 23 7 0.0581 -8.2359 3.4665 24 14 1.0239 -8.8221 5.9972 25 1 -0.3670 -9.2507 6.2922 26 1 1.4070 -7.7199 6.9157 27 1 1.9470 -9.9694 6.1885 28 6 2.1566 -3.9643 -0.1336 29 6 1.2272 -2.8197 0.2840 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.5175 -3.1545 3.0956 37 1 2.9226 -2.0606 3.1735 38 1 3.5701 -4.4876 2.9675 39 1 4.1727 -3.4869 1.6240 40 1 1.6298 -5.1751 1.5688 41 1 3.0096 -8.3155 -1.6205 42 1 4.5092 -7.4430 -1.2220 43 1 2.8773 -9.1812 0.6854 44 1 4.4477 -9.6056 -0.0384 45 1 5.5141 -7.6961 1.0990 46 1 4.6865 -8.7256 2.2945 47 1 1.6270 -7.3402 1.8649 48 1 0.1132 -7.9264 2.5489 49 1 3.0586 -3.5537 -0.5872 50 1 1.6454 -4.6037 -0.8532 51 1 0.2873 -3.2286 0.6549 52 1 1.0343 -2.1743 -0.5730 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075402666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:26 Heat of formation + Delta-G solvation = -142.818732 kcal Electronic energy + Delta-G solvation = -32829.810464 eV Core-core repulsion = 28549.883337 eV Total energy + Delta-G solvation = -4279.927127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.16231 -41.50029 -40.65329 -38.49688 -36.59345 -35.06005 -34.53863 -34.23349 -32.12240 -32.07183 -29.80734 -28.47294 -27.33918 -25.83613 -25.10608 -24.86748 -23.68157 -23.04091 -21.38563 -20.64197 -20.21637 -19.24382 -18.71380 -17.68747 -17.36748 -17.18534 -16.97937 -16.51782 -16.28625 -15.83518 -15.74022 -15.64013 -15.51916 -15.14527 -15.10212 -14.76311 -14.55017 -14.18741 -14.10697 -13.87714 -13.61832 -13.46064 -13.39009 -13.21077 -13.14673 -13.02776 -12.98333 -12.72220 -12.65937 -12.36803 -12.24062 -12.06928 -12.03568 -11.90905 -11.66906 -11.62834 -11.45502 -11.27567 -11.09257 -10.84017 -10.75017 -10.24720 -9.83110 -8.98868 -8.29724 -5.21423 1.24325 1.57420 1.66271 1.72953 1.82308 2.70521 2.81850 2.98846 3.37350 3.46299 3.54194 3.60466 3.66327 3.79114 3.83405 3.92327 4.00645 4.07148 4.10100 4.13806 4.23151 4.29466 4.31892 4.45568 4.52103 4.55991 4.58539 4.59761 4.66622 4.68955 4.72065 4.77577 4.80122 4.84986 4.87254 4.96726 4.97843 5.03962 5.06021 5.08682 5.12452 5.17471 5.33947 5.41216 5.46800 5.48425 5.66498 6.18783 6.36526 6.58225 6.82317 7.18952 8.10929 8.23588 9.21645 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.012433 B = 0.003524 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.499716 B = 7942.659908 C = 9242.225685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 C -0.154 4.154 4 F -0.194 7.194 5 C 0.493 3.507 6 O -0.564 6.564 7 N -0.595 5.595 8 C 0.115 3.885 9 C -0.113 4.113 10 C -0.068 4.068 11 C 0.102 3.898 12 H 0.072 0.928 13 O -0.389 6.389 14 C 0.065 3.935 15 C -0.142 4.142 16 C -0.136 4.136 17 C 0.146 3.854 18 H 0.046 0.954 19 N -0.727 5.727 20 C -0.317 4.317 21 H 0.059 0.941 22 C -0.101 4.101 23 N -0.976 5.976 24 Si 1.120 2.880 25 H -0.296 1.296 26 H -0.281 1.281 27 H -0.283 1.283 28 C -0.112 4.112 29 C 0.090 3.910 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.362 0.638 48 H 0.243 0.757 49 H 0.069 0.931 50 H 0.085 0.915 51 H 0.071 0.929 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 15.016 -12.604 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.083 3.917 3 C -0.212 4.212 4 F -0.175 7.175 5 C 0.280 3.720 6 O -0.443 6.443 7 N -0.326 5.326 8 C -0.007 4.007 9 C -0.151 4.151 10 C -0.087 4.087 11 C 0.044 3.956 12 H 0.090 0.910 13 O -0.308 6.308 14 C -0.011 4.011 15 C -0.180 4.180 16 C -0.176 4.176 17 C 0.037 3.963 18 H 0.064 0.936 19 N -0.369 5.369 20 C -0.449 4.449 21 H 0.077 0.923 22 C -0.293 4.293 23 N -0.624 5.624 24 Si 0.946 3.054 25 H -0.222 1.222 26 H -0.207 1.207 27 H -0.210 1.210 28 C -0.150 4.150 29 C -0.032 4.032 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.057 0.943 47 H 0.195 0.805 48 H 0.054 0.946 49 H 0.088 0.912 50 H 0.104 0.896 51 H 0.089 0.911 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.501 14.753 -10.925 18.902 hybrid contribution 1.051 -0.261 -0.780 1.334 sum 5.551 14.492 -11.705 19.439 Atomic orbital electron populations 1.22555 0.89325 1.05217 1.06229 1.21276 0.97972 0.93484 0.78926 1.22179 1.02370 0.91384 1.05243 1.92830 1.90428 1.82326 1.51901 1.21449 0.78915 0.82331 0.89316 1.90684 1.44367 1.66065 1.43232 1.48234 1.57477 1.06499 1.20385 1.21532 0.98133 0.93934 0.87107 1.21771 0.98187 0.95680 0.99473 1.20932 0.98442 0.93298 0.96031 1.22271 0.95598 0.90722 0.87028 0.91003 1.87854 1.45698 1.43085 1.54174 1.22648 0.96548 0.86713 0.95175 1.21965 1.00335 0.99101 0.96605 1.22137 0.98608 0.98928 0.97971 1.21002 0.87379 0.93544 0.94355 0.93578 1.42332 1.06739 1.77240 1.10610 1.20260 0.96835 1.37625 0.90143 0.92288 1.26852 0.91779 1.01651 1.09001 1.70968 1.30430 1.52756 1.08276 0.82706 0.75223 0.76218 0.71223 1.22226 1.20715 1.20992 1.21768 1.00162 0.95960 0.97094 1.22381 0.95568 0.94386 0.90854 0.89504 0.87387 0.90499 0.92061 0.87983 0.89749 0.91916 0.89544 0.91235 0.90894 0.92585 0.88056 0.91414 0.94490 0.90125 0.90671 0.94263 0.80511 0.94620 0.91201 0.89613 0.91118 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.60 71.98 0.62 -1.78 16 2 C 0.10 1.99 1.20 -11.54 -0.01 1.97 16 3 C -0.15 -2.46 8.28 71.98 0.60 -1.86 16 4 F -0.19 -3.92 14.33 44.97 0.64 -3.28 16 5 C 0.49 13.04 6.77 87.66 0.59 13.64 16 6 O -0.56 -18.36 15.39 -3.04 -0.05 -18.41 16 7 N -0.59 -15.72 2.97 -818.82 -2.43 -18.15 16 8 C 0.12 3.41 6.43 86.37 0.56 3.97 16 9 C -0.11 -3.34 5.16 30.67 0.16 -3.18 16 10 C -0.07 -2.12 1.83 -10.77 -0.02 -2.14 16 11 C 0.10 3.23 1.90 30.63 0.06 3.29 16 12 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 13 O -0.39 -12.69 9.10 -148.98 -1.36 -14.05 16 14 C 0.07 1.79 6.84 72.01 0.49 2.29 16 15 C -0.14 -4.60 5.97 30.68 0.18 -4.42 16 16 C -0.14 -4.71 5.66 30.71 0.17 -4.54 16 17 C 0.15 5.58 2.32 45.08 0.10 5.68 16 18 H 0.05 1.82 6.65 -2.39 -0.02 1.80 16 19 N -0.73 -35.11 3.77 -322.50 -1.22 -36.32 16 20 C -0.32 -17.37 9.91 84.03 0.83 -16.54 16 21 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 22 C -0.10 -5.81 5.50 84.86 0.47 -5.35 16 23 N -0.98 -60.70 13.70 21.65 0.30 -60.41 16 24 Si 1.12 52.42 29.92 68.60 2.05 54.47 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 28 C -0.11 -2.85 5.18 30.69 0.16 -2.69 16 29 C 0.09 2.09 4.88 86.38 0.42 2.51 16 30 H 0.09 1.13 8.14 -2.38 -0.02 1.12 16 31 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 1.10 5.99 -2.39 -0.01 1.08 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.35 7.99 -2.38 -0.02 1.34 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.64 7.01 -2.39 -0.02 2.62 16 38 H 0.07 2.30 6.59 -2.38 -0.02 2.28 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.06 2.20 7.05 -2.38 -0.02 2.18 16 41 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.04 1.51 7.76 -2.38 -0.02 1.49 16 44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.36 18.94 5.84 -92.71 -0.54 18.40 16 48 H 0.24 15.22 6.77 -92.71 -0.63 14.59 16 49 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.09 2.21 7.50 -2.39 -0.02 2.19 16 51 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 52 H 0.12 2.34 3.86 -2.38 -0.01 2.33 16 Total: -1.00 -69.43 391.74 3.84 -65.59 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: 0.51 Total: 39.69 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.38 Total: -9.14 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -3.35 Total: -114.88 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.40 Total: -32.45 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.64 Total: -3.28 kcal Atomic # 14 Polarization: 52.42 SS G_CDS: 2.05 Total: 54.47 kcal Total: -69.43 3.84 -65.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075402666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.227 kcal (2) G-P(sol) polarization free energy of solvation -69.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds