Wall clock time and date at job start Wed Apr 1 2020 02:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47338 * 2 1 4 4 F 1.39908 * 109.46930 * 240.00366 * 2 1 3 5 5 C 1.50696 * 109.47482 * 120.00022 * 2 1 3 6 6 O 1.21285 * 120.00082 * 245.77430 * 5 2 1 7 7 N 1.34775 * 119.99794 * 66.05227 * 5 2 1 8 8 C 1.46920 * 120.63285 * 5.30524 * 7 5 2 9 9 C 1.52759 * 109.01067 * 233.58767 * 8 7 5 10 10 C 1.53042 * 109.38256 * 305.58381 * 9 8 7 11 11 C 1.53000 * 109.46352 * 181.25918 * 10 9 8 12 12 H 1.09002 * 109.48246 * 54.75739 * 11 10 9 13 13 O 1.42906 * 109.48035 * 294.72562 * 11 10 9 14 14 C 1.42899 * 114.09774 * 178.85616 * 13 11 10 15 15 C 1.53096 * 109.41748 * 61.15937 * 14 13 11 16 16 C 1.53182 * 109.15810 * 302.39376 * 15 14 13 17 17 C 1.53086 * 109.48145 * 174.78278 * 11 10 9 18 18 H 1.08998 * 109.52507 * 57.62475 * 17 11 10 19 19 N 1.46495 * 109.52420 * 297.49537 * 17 11 10 20 20 C 1.36938 * 120.00387 * 154.99975 * 19 17 11 21 21 H 1.08004 * 119.99640 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00203 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00187 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99886 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47364 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47200 * 119.99850 * 24 22 20 27 27 H 1.48500 * 109.47072 * 240.00080 * 24 22 20 28 28 C 1.53041 * 109.53526 * 61.24023 * 10 9 8 29 29 C 1.46929 * 120.62838 * 185.58686 * 7 5 2 30 30 H 1.09002 * 109.46515 * 299.99684 * 1 2 3 31 31 H 1.08993 * 109.47313 * 59.99894 * 1 2 3 32 32 H 1.08996 * 109.46338 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47453 * 184.98204 * 3 2 1 34 34 H 1.09009 * 109.46830 * 304.98323 * 3 2 1 35 35 H 1.09001 * 109.46762 * 64.97926 * 3 2 1 36 36 H 1.09006 * 109.58929 * 353.41875 * 8 7 5 37 37 H 1.08997 * 109.58951 * 113.84285 * 8 7 5 38 38 H 1.09002 * 109.56907 * 185.55415 * 9 8 7 39 39 H 1.09000 * 109.39216 * 65.50956 * 9 8 7 40 40 H 1.09001 * 109.45384 * 301.22919 * 10 9 8 41 41 H 1.09000 * 109.48395 * 301.17342 * 14 13 11 42 42 H 1.08999 * 109.48180 * 181.14101 * 14 13 11 43 43 H 1.08993 * 109.52480 * 182.48401 * 15 14 13 44 44 H 1.09006 * 109.51929 * 62.29409 * 15 14 13 45 45 H 1.08996 * 109.53870 * 297.10744 * 16 15 14 46 46 H 1.09003 * 109.53929 * 176.84526 * 16 15 14 47 47 H 0.96993 * 120.00050 * 335.00426 * 19 17 11 48 48 H 0.96997 * 120.00181 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.49849 * 178.68290 * 28 10 9 50 50 H 1.09000 * 109.49788 * 58.58576 * 28 10 9 51 51 H 1.08999 * 109.58526 * 246.15019 * 29 7 5 52 52 H 1.09001 * 109.59086 * 6.58088 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0324 -0.7104 1.2304 6 8 2.6410 -0.0949 2.0800 7 7 1.8104 -2.0308 1.3840 8 6 1.1835 -2.8143 0.3108 9 6 -0.0251 -3.5569 0.8778 10 6 0.4099 -4.3849 2.0891 11 6 -0.7928 -5.1540 2.6393 12 1 -1.2412 -5.7467 1.8419 13 8 -1.7577 -4.2301 3.1468 14 6 -2.9390 -4.8455 3.6643 15 6 -2.5658 -5.7601 4.8339 16 6 -1.5512 -6.8022 4.3533 17 6 -0.3333 -6.0809 3.7677 18 1 0.1525 -5.4934 4.5467 19 7 0.6113 -7.0670 3.2372 20 6 1.5298 -7.6514 4.0680 21 1 1.5575 -7.3855 5.1144 22 6 2.4251 -8.5853 3.5652 23 7 2.3917 -8.9090 2.2898 24 14 3.6785 -9.3819 4.6983 25 1 3.5098 -8.8504 6.0747 26 1 3.4732 -10.8526 4.7077 27 1 5.0486 -9.0764 4.2137 28 6 0.9602 -3.4556 3.1733 29 6 2.1851 -2.7129 2.6303 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 3.1264 1.4439 -0.0892 34 1 1.6057 1.9815 -0.8421 35 1 1.7514 1.9299 0.9312 36 1 0.8589 -2.1467 -0.4874 37 1 1.9005 -3.5352 -0.0820 38 1 -0.4385 -4.2172 0.1153 39 1 -0.7825 -2.8352 1.1835 40 1 1.1847 -5.0899 1.7876 41 1 -3.4156 -5.4340 2.8803 42 1 -3.6282 -4.0754 4.0107 43 1 -3.4595 -6.2642 5.2016 44 1 -2.1260 -5.1659 5.6350 45 1 -2.0074 -7.4287 3.5868 46 1 -1.2388 -7.4216 5.1941 47 1 0.5862 -7.3060 2.2976 48 1 3.0171 -9.5619 1.9386 49 1 1.2482 -4.0436 4.0448 50 1 0.1940 -2.7343 3.4575 51 1 2.9854 -3.4254 2.4305 52 1 2.5212 -1.9783 3.3621 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075402667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:29 Heat of formation + Delta-G solvation = -143.941879 kcal Electronic energy + Delta-G solvation = -32724.113615 eV Core-core repulsion = 28444.137785 eV Total energy + Delta-G solvation = -4279.975830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.10131 -41.48431 -40.54368 -38.38520 -36.58762 -34.98590 -34.52967 -34.08773 -32.27644 -32.11456 -29.87044 -28.41770 -27.29325 -26.09284 -25.19343 -24.44185 -23.44584 -22.87106 -21.55655 -20.81015 -20.02523 -19.26295 -18.71908 -17.62845 -17.22565 -17.06794 -16.82688 -16.35788 -16.26018 -15.84235 -15.72729 -15.63058 -15.46035 -15.23199 -14.80765 -14.66263 -14.36358 -14.20094 -14.15720 -13.85627 -13.72955 -13.39152 -13.29077 -13.12687 -13.07402 -13.03206 -12.94895 -12.88674 -12.65941 -12.38014 -12.24073 -12.12174 -12.06101 -11.94184 -11.82871 -11.76050 -11.48216 -11.38476 -11.07532 -10.84039 -10.75334 -10.22503 -9.77502 -8.96306 -7.93315 -5.20006 1.27807 1.45279 1.47054 1.55132 1.77498 2.54163 2.90257 3.02623 3.40511 3.41307 3.56269 3.65635 3.74137 3.75597 3.87256 3.94389 4.07469 4.10335 4.21208 4.24100 4.33317 4.37423 4.43877 4.45719 4.58748 4.59329 4.62824 4.67567 4.69203 4.75086 4.77661 4.85611 4.89637 4.93412 4.98195 5.06088 5.06632 5.08524 5.11212 5.15344 5.19284 5.22920 5.37472 5.47152 5.50660 5.56758 5.58237 6.23127 6.26391 6.39229 6.86090 7.36112 8.09630 8.34125 9.29671 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.003601 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.607861 B = 7774.322615 C = 9284.661733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.104 3.896 3 C -0.155 4.155 4 F -0.199 7.199 5 C 0.492 3.508 6 O -0.566 6.566 7 N -0.594 5.594 8 C 0.094 3.906 9 C -0.119 4.119 10 C -0.069 4.069 11 C 0.107 3.893 12 H 0.052 0.948 13 O -0.379 6.379 14 C 0.059 3.941 15 C -0.146 4.146 16 C -0.137 4.137 17 C 0.149 3.851 18 H 0.044 0.956 19 N -0.724 5.724 20 C -0.228 4.228 21 H 0.069 0.931 22 C -0.067 4.067 23 N -0.964 5.964 24 Si 0.960 3.040 25 H -0.270 1.270 26 H -0.295 1.295 27 H -0.296 1.296 28 C -0.105 4.105 29 C 0.113 3.887 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.374 0.626 48 H 0.249 0.751 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.059 0.941 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 18.132 -5.380 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.083 3.917 3 C -0.213 4.213 4 F -0.179 7.179 5 C 0.279 3.721 6 O -0.446 6.446 7 N -0.325 5.325 8 C -0.028 4.028 9 C -0.157 4.157 10 C -0.088 4.088 11 C 0.049 3.951 12 H 0.070 0.930 13 O -0.298 6.298 14 C -0.017 4.017 15 C -0.184 4.184 16 C -0.177 4.177 17 C 0.040 3.960 18 H 0.062 0.938 19 N -0.365 5.365 20 C -0.361 4.361 21 H 0.086 0.914 22 C -0.260 4.260 23 N -0.615 5.615 24 Si 0.790 3.210 25 H -0.195 1.195 26 H -0.223 1.223 27 H -0.224 1.224 28 C -0.143 4.143 29 C -0.010 4.010 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.134 0.866 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.206 0.794 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.077 0.923 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.753 18.601 -4.797 22.014 hybrid contribution 1.214 -1.797 0.461 2.217 sum -9.538 16.804 -4.336 19.803 Atomic orbital electron populations 1.22602 0.89023 1.05503 1.06180 1.21303 0.98183 0.93376 0.78885 1.22190 1.02308 0.91585 1.05193 1.92871 1.90512 1.82601 1.51953 1.21465 0.79331 0.82213 0.89096 1.90679 1.41670 1.66404 1.45804 1.48206 1.59340 1.07767 1.17181 1.22195 0.95258 0.95915 0.89440 1.21851 0.97297 0.99347 0.97165 1.21042 0.95644 0.96596 0.95515 1.22063 0.89156 0.89781 0.94135 0.92988 1.87864 1.28721 1.33055 1.80134 1.22719 0.86903 0.97324 0.94742 1.22170 0.99440 0.97619 0.99172 1.22224 0.97054 0.98350 1.00084 1.20997 0.89725 0.89928 0.95342 0.93785 1.42380 1.37520 1.47655 1.08913 1.19485 1.08235 1.16179 0.92152 0.91352 1.25340 1.01987 1.01415 0.97223 1.69783 1.40733 1.37614 1.13341 0.85272 0.79098 0.77852 0.78766 1.19483 1.22289 1.22369 1.21676 0.96625 0.98011 0.97993 1.21593 0.97357 0.96024 0.85991 0.89421 0.87487 0.89991 0.92200 0.87903 0.89851 0.86485 0.91509 0.89362 0.89942 0.91366 0.92836 0.86618 0.89590 0.91714 0.93266 0.93954 0.79390 0.94179 0.91978 0.90809 0.92263 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.57 71.98 0.62 -1.75 16 2 C 0.10 2.05 1.20 -11.54 -0.01 2.03 16 3 C -0.16 -2.61 8.33 71.98 0.60 -2.01 16 4 F -0.20 -4.27 14.62 44.97 0.66 -3.61 16 5 C 0.49 13.49 6.78 87.66 0.59 14.09 16 6 O -0.57 -19.13 15.32 -3.05 -0.05 -19.17 16 7 N -0.59 -16.08 2.98 -819.74 -2.44 -18.52 16 8 C 0.09 2.15 5.13 86.22 0.44 2.60 16 9 C -0.12 -2.74 5.03 30.53 0.15 -2.58 16 10 C -0.07 -2.09 1.92 -10.77 -0.02 -2.11 16 11 C 0.11 3.32 1.88 30.62 0.06 3.38 16 12 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 13 O -0.38 -10.25 9.12 -148.98 -1.36 -11.60 16 14 C 0.06 1.31 6.84 72.01 0.49 1.80 16 15 C -0.15 -3.62 6.14 30.69 0.19 -3.43 16 16 C -0.14 -4.65 5.61 30.71 0.17 -4.47 16 17 C 0.15 5.60 2.20 45.08 0.10 5.69 16 18 H 0.04 1.78 6.38 -2.39 -0.02 1.76 16 19 N -0.72 -34.27 4.41 -322.53 -1.42 -35.69 16 20 C -0.23 -12.22 9.93 84.03 0.83 -11.39 16 21 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 22 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 23 N -0.96 -57.09 13.06 21.65 0.28 -56.80 16 24 Si 0.96 45.79 29.55 68.60 2.03 47.81 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 28 C -0.11 -3.18 4.93 30.67 0.15 -3.03 16 29 C 0.11 3.43 6.42 86.36 0.55 3.98 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.13 4.99 -2.39 -0.01 1.12 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.08 1.43 7.87 -2.39 -0.02 1.41 16 36 H 0.12 2.21 3.68 -2.38 -0.01 2.20 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 1.77 7.31 -2.39 -0.02 1.75 16 40 H 0.07 2.53 7.48 -2.39 -0.02 2.51 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.37 18.99 7.73 -92.71 -0.72 18.27 16 48 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 49 H 0.06 2.13 6.46 -2.38 -0.02 2.11 16 50 H 0.07 2.16 7.60 -2.39 -0.02 2.14 16 51 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.08 2.59 7.04 -2.39 -0.02 2.57 16 Total: -1.00 -65.89 393.46 3.29 -62.61 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: 0.20 Total: 35.46 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.39 Total: -0.47 kcal Atomic # 7 Polarization: -107.44 SS G_CDS: -3.58 Total: -111.02 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.41 Total: -30.78 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.66 Total: -3.61 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -65.89 3.29 -62.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075402667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.333 kcal (2) G-P(sol) polarization free energy of solvation -65.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds