Wall clock time and date at job start Wed Apr 1 2020 02:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47153 * 2 1 4 4 F 1.39896 * 109.47568 * 239.99715 * 2 1 3 5 5 C 1.50700 * 109.46941 * 119.99459 * 2 1 3 6 6 O 1.21282 * 120.00465 * 250.00551 * 5 2 1 7 7 N 1.34777 * 119.99857 * 70.00193 * 5 2 1 8 8 C 1.46930 * 120.63095 * 180.02562 * 7 5 2 9 9 C 1.53197 * 108.77401 * 233.58699 * 8 7 5 10 10 C 1.53044 * 109.31276 * 305.36587 * 9 8 7 11 11 C 1.52998 * 109.45966 * 181.38685 * 10 9 8 12 12 H 1.08997 * 109.48348 * 185.54800 * 11 10 9 13 13 O 1.42901 * 109.48036 * 305.58299 * 11 10 9 14 14 C 1.42902 * 114.09911 * 181.14561 * 13 11 10 15 15 C 1.53098 * 109.41208 * 298.83562 * 14 13 11 16 16 C 1.53183 * 109.15775 * 57.61068 * 15 14 13 17 17 C 1.53091 * 109.48306 * 65.52510 * 11 10 9 18 18 H 1.09008 * 109.51805 * 302.37648 * 17 11 10 19 19 N 1.46493 * 109.52219 * 62.49851 * 17 11 10 20 20 C 1.36939 * 120.00248 * 205.00137 * 19 17 11 21 21 H 1.08002 * 119.99716 * 0.27908 * 20 19 17 22 22 C 1.38813 * 120.00068 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00122 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99760 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47445 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47348 * 119.99761 * 24 22 20 27 27 H 1.48507 * 109.47211 * 239.99678 * 24 22 20 28 28 C 1.53041 * 109.52829 * 61.37154 * 10 9 8 29 29 C 1.46929 * 120.63057 * 359.97438 * 7 5 2 30 30 H 1.08998 * 109.47816 * 300.00450 * 1 2 3 31 31 H 1.09002 * 109.47191 * 60.00029 * 1 2 3 32 32 H 1.08994 * 109.47579 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47067 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46840 * 299.99547 * 3 2 1 35 35 H 1.09001 * 109.46867 * 59.99566 * 3 2 1 36 36 H 1.08999 * 109.58405 * 113.80287 * 8 7 5 37 37 H 1.09000 * 109.58780 * 353.37167 * 8 7 5 38 38 H 1.08998 * 109.49554 * 185.41277 * 9 8 7 39 39 H 1.09003 * 109.49333 * 65.31445 * 9 8 7 40 40 H 1.09001 * 109.45550 * 301.35740 * 10 9 8 41 41 H 1.08992 * 109.48267 * 58.82023 * 14 13 11 42 42 H 1.09000 * 109.48331 * 178.85951 * 14 13 11 43 43 H 1.08997 * 109.52430 * 177.51218 * 15 14 13 44 44 H 1.08997 * 109.52368 * 297.64439 * 15 14 13 45 45 H 1.09004 * 109.53780 * 183.14991 * 16 15 14 46 46 H 1.08996 * 109.54442 * 62.89146 * 16 15 14 47 47 H 0.96996 * 120.00274 * 25.00965 * 19 17 11 48 48 H 0.96996 * 119.99598 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.49366 * 58.58083 * 28 10 9 50 50 H 1.09000 * 109.49837 * 178.67679 * 28 10 9 51 51 H 1.09001 * 109.58214 * 246.19763 * 29 7 5 52 52 H 1.08999 * 109.58670 * 6.62224 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0322 -0.7103 1.2305 6 8 2.5730 -0.0815 2.1155 7 7 1.8805 -2.0444 1.3477 8 6 2.3644 -2.7509 2.5416 9 6 3.2807 -3.8962 2.0992 10 6 2.5340 -4.7854 1.1021 11 6 3.4340 -5.9500 0.6843 12 1 2.9417 -6.5274 -0.0981 13 8 4.6749 -5.4404 0.1916 14 6 5.5848 -6.4489 -0.2523 15 6 5.9354 -7.3694 0.9197 16 6 4.6478 -7.9796 1.4822 17 6 3.6982 -6.8505 1.8939 18 1 4.1526 -6.2639 2.6924 19 7 2.4338 -7.4213 2.3646 20 6 2.3052 -7.8184 3.6688 21 1 3.1346 -7.7065 4.3516 22 6 1.1073 -8.3597 4.1147 23 7 0.0948 -8.4910 3.2840 24 14 0.9318 -8.9006 5.8940 25 1 2.2047 -8.6481 6.6161 26 1 -0.1641 -8.1336 6.5388 27 1 0.6155 -10.3509 5.9417 28 6 2.1567 -3.9641 -0.1329 29 6 1.2269 -2.8197 0.2844 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6765 1.9564 0.8900 36 1 1.5171 -3.1542 3.0960 37 1 2.9223 -2.0602 3.1739 38 1 3.5697 -4.4872 2.9682 39 1 4.1721 -3.4862 1.6245 40 1 1.6296 -5.1749 1.5694 41 1 5.1207 -7.0328 -1.0470 42 1 6.4929 -5.9786 -0.6294 43 1 6.5945 -8.1654 0.5731 44 1 6.4370 -6.7939 1.6975 45 1 4.8846 -8.5923 2.3521 46 1 4.1726 -8.5959 0.7191 47 1 1.6877 -7.5182 1.7524 48 1 -0.7423 -8.8690 3.5957 49 1 3.0589 -3.5536 -0.5863 50 1 1.6457 -4.6034 -0.8528 51 1 0.2871 -3.2285 0.6554 52 1 1.0341 -2.1743 -0.5726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075402668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:32 Heat of formation + Delta-G solvation = -144.147292 kcal Electronic energy + Delta-G solvation = -32686.894857 eV Core-core repulsion = 28406.910119 eV Total energy + Delta-G solvation = -4279.984738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.13156 -41.44483 -40.55535 -38.37478 -36.59447 -34.98443 -34.49729 -34.09321 -32.27312 -32.09266 -29.86962 -28.44351 -27.28637 -26.10027 -25.21695 -24.45940 -23.47555 -22.85658 -21.49642 -20.81979 -20.13279 -19.26487 -18.66767 -17.61382 -17.23397 -17.05000 -16.84281 -16.36076 -16.31227 -15.84876 -15.70883 -15.54621 -15.46931 -15.24738 -14.79943 -14.70172 -14.44591 -14.22326 -14.09392 -13.85556 -13.65535 -13.39035 -13.35851 -13.14258 -13.08121 -12.98590 -12.97565 -12.88814 -12.66441 -12.38877 -12.24130 -12.11922 -12.09860 -11.93796 -11.83617 -11.77775 -11.48651 -11.39005 -11.08433 -10.84177 -10.73639 -10.23630 -9.76343 -8.96208 -7.92585 -5.19472 1.28751 1.46129 1.47950 1.56084 1.78961 2.54718 2.89364 3.03080 3.40321 3.40980 3.56963 3.66789 3.69354 3.78448 3.87231 3.94050 4.05908 4.09418 4.21422 4.23902 4.32050 4.35913 4.43495 4.44882 4.58196 4.59767 4.61779 4.67054 4.68555 4.74435 4.75688 4.84935 4.88815 4.92612 4.97200 5.04163 5.06768 5.08019 5.10114 5.13954 5.15016 5.22185 5.36035 5.46219 5.50776 5.55944 5.56929 6.24080 6.26729 6.38454 6.87240 7.36750 8.09318 8.34877 9.30368 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011347 B = 0.003597 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.121873 B = 7782.633887 C = 9294.058703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.104 3.896 3 C -0.154 4.154 4 F -0.195 7.195 5 C 0.492 3.508 6 O -0.567 6.567 7 N -0.594 5.594 8 C 0.113 3.887 9 C -0.107 4.107 10 C -0.068 4.068 11 C 0.105 3.895 12 H 0.052 0.948 13 O -0.383 6.383 14 C 0.059 3.941 15 C -0.145 4.145 16 C -0.136 4.136 17 C 0.150 3.850 18 H 0.044 0.956 19 N -0.723 5.723 20 C -0.229 4.229 21 H 0.068 0.932 22 C -0.066 4.066 23 N -0.963 5.963 24 Si 0.960 3.040 25 H -0.271 1.271 26 H -0.295 1.295 27 H -0.296 1.296 28 C -0.117 4.117 29 C 0.089 3.911 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.049 0.951 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.068 0.932 50 H 0.086 0.914 51 H 0.078 0.922 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 15.199 -12.221 19.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.083 3.917 3 C -0.212 4.212 4 F -0.175 7.175 5 C 0.279 3.721 6 O -0.446 6.446 7 N -0.325 5.325 8 C -0.010 4.010 9 C -0.145 4.145 10 C -0.087 4.087 11 C 0.047 3.953 12 H 0.070 0.930 13 O -0.301 6.301 14 C -0.018 4.018 15 C -0.183 4.183 16 C -0.177 4.177 17 C 0.041 3.959 18 H 0.062 0.938 19 N -0.364 5.364 20 C -0.361 4.361 21 H 0.086 0.914 22 C -0.259 4.259 23 N -0.614 5.614 24 Si 0.791 3.209 25 H -0.196 1.196 26 H -0.222 1.222 27 H -0.223 1.223 28 C -0.155 4.155 29 C -0.032 4.032 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.207 0.793 48 H 0.059 0.941 49 H 0.087 0.913 50 H 0.105 0.895 51 H 0.096 0.904 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.462 15.678 -11.605 20.009 hybrid contribution -0.422 -1.436 1.165 1.896 sum 4.040 14.242 -10.440 18.115 Atomic orbital electron populations 1.22547 0.89146 1.05332 1.06192 1.21276 0.98078 0.93402 0.78929 1.22180 1.02286 0.91513 1.05223 1.92830 1.90451 1.82325 1.51919 1.21459 0.78948 0.82433 0.89300 1.90678 1.44474 1.66160 1.43327 1.48228 1.57367 1.06449 1.20436 1.21600 0.98242 0.94069 0.87060 1.21673 0.98057 0.95615 0.99145 1.21052 0.97483 0.93982 0.96154 1.22100 0.84936 0.94141 0.94137 0.93041 1.87882 1.26750 1.33309 1.82207 1.22721 0.93664 0.90329 0.95063 1.22163 0.97213 0.99947 0.99023 1.22219 0.96454 0.99056 0.99939 1.20973 0.87112 0.92789 0.95004 0.93840 1.42367 1.11096 1.74099 1.08830 1.19482 0.96961 1.31804 0.87893 0.91410 1.25335 0.96274 1.03217 1.01028 1.69784 1.03595 1.52643 1.35371 0.85265 0.77427 0.77073 0.81165 1.19597 1.22204 1.22331 1.21848 1.00040 0.96533 0.97048 1.22400 0.95625 0.94354 0.90868 0.89510 0.87429 0.90282 0.92247 0.87961 0.89748 0.91368 0.90132 0.91860 0.91718 0.90807 0.92824 0.86874 0.89493 0.91765 0.93780 0.93199 0.79335 0.94138 0.91346 0.89519 0.90388 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 8.60 71.98 0.62 -1.74 16 2 C 0.10 2.04 1.20 -11.54 -0.01 2.03 16 3 C -0.15 -2.58 8.28 71.98 0.60 -1.98 16 4 F -0.19 -4.09 14.33 44.97 0.64 -3.44 16 5 C 0.49 13.44 6.77 87.66 0.59 14.03 16 6 O -0.57 -19.08 15.39 -3.04 -0.05 -19.13 16 7 N -0.59 -16.07 2.97 -818.78 -2.43 -18.50 16 8 C 0.11 3.43 6.43 86.36 0.56 3.98 16 9 C -0.11 -3.40 4.93 30.67 0.15 -3.24 16 10 C -0.07 -2.14 1.92 -10.77 -0.02 -2.16 16 11 C 0.11 3.44 1.88 30.62 0.06 3.49 16 12 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 13 O -0.38 -11.39 9.12 -148.98 -1.36 -12.75 16 14 C 0.06 1.41 6.84 72.01 0.49 1.91 16 15 C -0.15 -3.81 6.14 30.69 0.19 -3.62 16 16 C -0.14 -4.75 5.61 30.71 0.17 -4.58 16 17 C 0.15 5.77 2.21 45.08 0.10 5.87 16 18 H 0.04 1.80 6.39 -2.38 -0.02 1.78 16 19 N -0.72 -34.37 4.40 -322.52 -1.42 -35.78 16 20 C -0.23 -12.25 9.93 84.03 0.83 -11.42 16 21 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 22 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 23 N -0.96 -56.53 13.06 21.65 0.28 -56.25 16 24 Si 0.96 45.45 29.55 68.60 2.03 47.48 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 C -0.12 -2.97 5.25 30.69 0.16 -2.81 16 29 C 0.09 2.04 4.88 86.38 0.42 2.46 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.08 5.99 -2.39 -0.01 1.07 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.41 7.99 -2.39 -0.02 1.39 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.58 7.01 -2.39 -0.02 2.56 16 38 H 0.06 2.23 6.48 -2.39 -0.02 2.21 16 39 H 0.06 2.10 7.60 -2.39 -0.02 2.08 16 40 H 0.07 2.73 7.47 -2.39 -0.02 2.72 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.37 19.02 7.73 -92.71 -0.72 18.30 16 48 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 49 H 0.07 1.84 7.88 -2.39 -0.02 1.82 16 50 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.12 2.29 3.86 -2.39 -0.01 2.28 16 Total: -1.00 -65.47 395.04 3.27 -62.20 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: 0.19 Total: 37.14 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.38 Total: -0.96 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -3.57 Total: -110.54 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.41 Total: -31.88 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.64 Total: -3.44 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -65.47 3.27 -62.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075402668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.943 kcal (2) G-P(sol) polarization free energy of solvation -65.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds