Wall clock time and date at job start Wed Apr 1 2020 02:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46947 * 2 1 4 4 H 1.09005 * 109.47349 * 305.40859 * 3 2 1 5 5 C 1.52991 * 109.47088 * 185.40687 * 3 2 1 6 6 C 1.50694 * 109.47360 * 65.00193 * 5 3 2 7 7 C 1.38241 * 119.99995 * 269.72680 * 6 5 3 8 8 C 1.38237 * 120.00077 * 179.78667 * 7 6 5 9 9 C 1.38239 * 119.99853 * 0.44087 * 8 7 6 10 10 C 1.38231 * 119.99982 * 359.81329 * 9 8 7 11 11 C 1.38233 * 120.00147 * 359.97438 * 10 9 8 12 12 C 1.50706 * 109.47091 * 65.40403 * 3 2 1 13 13 O 1.21276 * 119.99759 * 35.14064 * 12 3 2 14 14 N 1.34773 * 119.99998 * 215.13950 * 12 3 2 15 15 C 1.47401 * 125.59211 * 354.97211 * 14 12 3 16 16 C 1.54852 * 104.81215 * 204.60800 * 15 14 12 17 17 C 1.55121 * 101.77728 * 322.81715 * 16 15 14 18 18 H 1.08999 * 113.46511 * 159.24156 * 17 16 15 19 19 C 1.54042 * 108.25748 * 286.08732 * 17 16 15 20 20 N 1.46703 * 106.82821 * 135.80780 * 19 17 16 21 21 C 1.36939 * 125.32414 * 161.84297 * 20 19 17 22 22 H 1.07998 * 119.99722 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00267 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00061 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47420 * 89.99663 * 25 23 21 27 27 H 1.48493 * 109.47343 * 210.00099 * 25 23 21 28 28 H 1.48503 * 109.46852 * 330.00216 * 25 23 21 29 29 C 1.46631 * 109.35730 * 341.82233 * 20 19 17 30 30 C 1.46736 * 125.58790 * 174.66655 * 14 12 3 31 31 H 1.09007 * 111.32961 * 56.12467 * 30 14 12 32 32 H 1.09005 * 109.47267 * 304.85464 * 1 2 3 33 33 H 1.09003 * 109.47100 * 64.85456 * 1 2 3 34 34 H 1.08997 * 109.46946 * 184.85258 * 1 2 3 35 35 H 1.09002 * 109.46746 * 240.00439 * 2 1 3 36 36 H 1.08991 * 109.46818 * 119.99902 * 2 1 3 37 37 H 1.09005 * 109.47410 * 304.99819 * 5 3 2 38 38 H 1.09002 * 109.47155 * 185.00010 * 5 3 2 39 39 H 1.07997 * 119.99887 * 359.97438 * 7 6 5 40 40 H 1.08000 * 120.00064 * 180.27924 * 8 7 6 41 41 H 1.07995 * 120.00070 * 179.83510 * 9 8 7 42 42 H 1.07995 * 120.00218 * 180.02562 * 10 9 8 43 43 H 1.08005 * 120.00163 * 180.02562 * 11 10 9 44 44 H 1.08998 * 110.36705 * 323.44137 * 15 14 12 45 45 H 1.08994 * 110.36890 * 85.77321 * 15 14 12 46 46 H 1.09001 * 110.96600 * 80.93306 * 16 15 14 47 47 H 1.08993 * 110.96745 * 204.69114 * 16 15 14 48 48 H 1.09002 * 109.99414 * 255.14860 * 19 17 16 49 49 H 1.08998 * 109.99011 * 16.47094 * 19 17 16 50 50 H 0.96998 * 120.00684 * 180.02562 * 24 23 21 51 51 H 1.09001 * 109.75926 * 120.92845 * 29 20 19 52 52 H 1.09004 * 109.75948 * 241.63340 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9836 -0.8376 5 6 3.5639 1.4447 -0.1359 6 6 3.9490 0.8858 -1.4813 7 6 4.1747 -0.4702 -1.6276 8 6 4.5237 -0.9836 -2.8627 9 6 4.6560 -0.1397 -3.9496 10 6 4.4355 1.2169 -3.8022 11 6 4.0822 1.7297 -2.5681 12 6 1.6499 2.1133 1.2920 13 8 1.6289 1.4761 2.3237 14 7 1.3243 3.4210 1.3007 15 6 1.4080 4.3337 0.1463 16 6 1.5565 5.7446 0.7671 17 6 0.6335 5.6426 2.0096 18 1 0.8565 6.3829 2.7779 19 6 -0.8294 5.6808 1.5285 20 7 -1.5475 4.6378 2.2692 21 6 -2.9073 4.5607 2.4105 22 1 -3.5407 5.3078 1.9554 23 6 -3.4718 3.5224 3.1386 24 7 -2.6999 2.6116 3.6928 25 14 -5.3269 3.4168 3.3308 26 1 -5.8950 2.6143 2.2178 27 1 -5.6543 2.7684 4.6259 28 1 -5.9061 4.7839 3.3011 29 6 -0.5814 3.6904 2.8343 30 6 0.8224 4.1683 2.4595 31 1 1.5073 4.0966 3.3045 32 1 -0.3634 0.5873 0.8433 33 1 -0.3633 0.4367 -0.9303 34 1 -0.3633 -1.0240 0.0869 35 1 1.8933 -0.5138 -0.8901 36 1 1.8933 -0.5138 0.8899 37 1 3.9998 0.8296 0.6514 38 1 3.9351 2.4657 -0.0469 39 1 4.0753 -1.1290 -0.7775 40 1 4.6956 -2.0436 -2.9780 41 1 4.9313 -0.5404 -4.9140 42 1 4.5384 1.8761 -4.6514 43 1 3.9095 2.7896 -2.4530 44 1 2.2786 4.0943 -0.4642 45 1 0.4976 4.2755 -0.4501 46 1 2.5885 5.9341 1.0624 47 1 1.2018 6.5124 0.0796 48 1 -1.2663 6.6566 1.7411 49 1 -0.8753 5.4766 0.4588 50 1 -3.0943 1.8858 4.2013 51 1 -0.6855 3.6609 3.9190 52 1 -0.7543 2.6969 2.4205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076312636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:58 Heat of formation + Delta-G solvation = 10.311322 kcal Electronic energy + Delta-G solvation = -31275.397943 eV Core-core repulsion = 27432.880258 eV Total energy + Delta-G solvation = -3842.517685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.44211 -39.48246 -38.07881 -35.17005 -34.74327 -32.12634 -32.04313 -31.05171 -30.84811 -29.29137 -28.36536 -26.36984 -24.75905 -24.52530 -23.13719 -22.62825 -21.72495 -21.16004 -20.25212 -19.38846 -18.26763 -17.31855 -16.86808 -16.62501 -15.88420 -15.31427 -15.25913 -14.98550 -14.57083 -14.32860 -13.95665 -13.69898 -13.60499 -13.43003 -13.27450 -13.24631 -12.99191 -12.69521 -12.56684 -12.38506 -12.04446 -11.85882 -11.73876 -11.51933 -11.26368 -11.15613 -11.08297 -10.99885 -10.95836 -10.73868 -10.69815 -10.54424 -10.41705 -10.20456 -10.11831 -9.84071 -9.66700 -9.25590 -9.05470 -8.80926 -8.55184 -8.09811 -6.77550 -5.64288 -3.00212 1.17857 1.23515 3.07963 3.38756 3.42650 3.47053 3.49807 3.66008 4.49251 4.52660 4.63203 4.78031 4.79825 4.84815 4.87114 4.95844 5.07371 5.15753 5.17611 5.31784 5.34194 5.41982 5.51799 5.53772 5.57582 5.58400 5.66576 5.75507 5.77363 5.79496 5.83597 5.89144 5.89700 6.01226 6.03727 6.06356 6.23604 6.25354 6.29716 6.34437 6.37067 6.44499 6.49225 6.53659 6.60877 6.65282 6.70619 6.84155 6.90538 7.59879 7.69634 7.92077 8.05683 8.32899 8.67946 9.27173 9.88274 10.51835 11.45392 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.003159 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.300947 B = 8861.271934 C = 9747.687275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.108 4.108 3 C -0.095 4.095 4 H 0.087 0.913 5 C -0.070 4.070 6 C -0.073 4.073 7 C -0.113 4.113 8 C -0.120 4.120 9 C -0.127 4.127 10 C -0.119 4.119 11 C -0.116 4.116 12 C 0.535 3.465 13 O -0.531 6.531 14 N -0.603 5.603 15 C 0.101 3.899 16 C -0.124 4.124 17 C -0.111 4.111 18 H 0.097 0.903 19 C 0.142 3.858 20 N -0.602 5.602 21 C -0.233 4.233 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.915 5.915 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.177 3.823 30 C 0.115 3.885 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.033 0.967 49 H 0.018 0.982 50 H 0.252 0.748 51 H 0.051 0.949 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.836 -0.881 -14.203 22.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.116 4.116 4 H 0.105 0.895 5 C -0.108 4.108 6 C -0.073 4.073 7 C -0.131 4.131 8 C -0.138 4.138 9 C -0.145 4.145 10 C -0.137 4.137 11 C -0.134 4.134 12 C 0.323 3.677 13 O -0.407 6.407 14 N -0.338 5.338 15 C -0.022 4.022 16 C -0.162 4.162 17 C -0.130 4.130 18 H 0.115 0.885 19 C 0.016 3.984 20 N -0.329 5.329 21 C -0.361 4.361 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.561 5.561 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.052 3.948 30 C 0.012 3.988 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.052 0.948 49 H 0.035 0.965 50 H 0.063 0.937 51 H 0.069 0.931 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.679 -1.460 -13.519 21.519 hybrid contribution -1.120 -0.044 -0.018 1.121 sum 15.559 -1.505 -13.537 20.679 Atomic orbital electron populations 1.21788 0.95073 1.01989 1.02337 1.21497 0.96630 0.93880 1.02521 1.21320 0.95761 0.98332 0.96237 0.89514 1.20526 0.94072 1.01848 0.94339 1.19827 0.98526 0.93743 0.95208 1.21129 0.99427 0.94825 0.97715 1.21149 0.99927 0.99711 0.92998 1.21129 1.00892 0.93811 0.98702 1.21125 0.99834 0.95461 0.97313 1.21069 1.00111 0.99705 0.92559 1.20018 0.76927 0.80224 0.90513 1.90708 1.52730 1.62983 1.34255 1.48443 1.64865 1.08453 1.11991 1.22292 1.01080 0.89454 0.89378 1.22747 0.99800 0.96042 0.97623 1.23142 0.96757 0.95993 0.97158 0.88485 1.21298 0.89276 0.93081 0.94760 1.44221 1.02266 1.26115 1.60256 1.18993 0.80452 1.08503 1.28179 0.90520 1.24826 0.97842 0.97485 1.00104 1.69993 1.32716 1.14985 1.38450 0.86157 0.85149 0.77476 0.77184 1.21667 1.21683 1.20732 1.21118 0.82271 0.93342 0.98107 1.22481 0.98227 0.90274 0.87867 0.90579 0.91511 0.93240 0.92760 0.91269 0.90775 0.90027 0.90682 0.85850 0.86190 0.86366 0.86202 0.86081 0.91397 0.91224 0.91119 0.90028 0.94836 0.96481 0.93698 0.93084 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.81 37.16 0.36 -2.14 16 2 C -0.11 -1.51 4.91 -26.73 -0.13 -1.65 16 3 C -0.09 -1.31 1.61 -91.77 -0.15 -1.46 16 4 H 0.09 1.14 7.11 -51.93 -0.37 0.77 16 5 C -0.07 -0.79 4.82 -27.89 -0.13 -0.93 16 6 C -0.07 -0.75 4.71 -104.62 -0.49 -1.24 16 7 C -0.11 -1.11 7.88 -39.58 -0.31 -1.43 16 8 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 9 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 10 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 11 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 12 C 0.54 9.65 5.30 -10.98 -0.06 9.59 16 13 O -0.53 -11.76 16.16 5.56 0.09 -11.67 16 14 N -0.60 -10.49 2.99 -162.72 -0.49 -10.98 16 15 C 0.10 1.36 5.70 -2.57 -0.01 1.35 16 16 C -0.12 -1.51 6.35 -24.63 -0.16 -1.67 16 17 C -0.11 -1.82 4.35 -87.74 -0.38 -2.20 16 18 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 19 C 0.14 2.84 6.45 -3.39 -0.02 2.82 16 20 N -0.60 -15.47 3.38 -172.35 -0.58 -16.06 16 21 C -0.23 -6.57 10.25 -15.06 -0.15 -6.72 16 22 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 23 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 24 N -0.91 -27.84 10.24 55.49 0.57 -27.27 16 25 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.18 4.50 4.97 -3.99 -0.02 4.48 16 30 C 0.12 2.26 3.53 -66.61 -0.24 2.03 16 31 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 32 H 0.07 1.37 7.15 -51.93 -0.37 1.00 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.84 5.91 -51.93 -0.31 0.53 16 36 H 0.07 1.12 7.66 -51.93 -0.40 0.72 16 37 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.07 0.78 7.94 -51.93 -0.41 0.37 16 39 H 0.12 1.13 8.00 -52.49 -0.42 0.71 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 44 H 0.07 0.71 7.49 -51.93 -0.39 0.32 16 45 H 0.07 1.01 7.18 -51.93 -0.37 0.64 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.02 0.34 6.52 -51.93 -0.34 0.00 16 50 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 51 H 0.05 1.47 7.33 -51.93 -0.38 1.09 16 52 H 0.05 1.54 6.80 -51.93 -0.35 1.19 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -33.75 402.09 -11.67 -45.42 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -8.73 Total: 2.22 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -3.57 Total: -5.27 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.50 Total: -54.30 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.75 -11.67 -45.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076312636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.735 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds