Wall clock time and date at job start Wed Apr 1 2020 02:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47034 * 2 1 4 4 H 1.08996 * 109.47441 * 184.54078 * 3 2 1 5 5 C 1.52994 * 109.47038 * 304.54126 * 3 2 1 6 6 C 1.50695 * 109.47384 * 295.40613 * 5 3 2 7 7 C 1.38247 * 119.99777 * 275.33230 * 6 5 3 8 8 C 1.38235 * 119.99803 * 179.78831 * 7 6 5 9 9 C 1.38226 * 120.00004 * 0.43739 * 8 7 6 10 10 C 1.38242 * 120.00407 * 359.81529 * 9 8 7 11 11 C 1.38230 * 119.99554 * 359.97430 * 10 9 8 12 12 C 1.50701 * 109.46615 * 64.54070 * 3 2 1 13 13 O 1.21284 * 119.99580 * 247.67832 * 12 3 2 14 14 N 1.34768 * 120.00121 * 67.95965 * 12 3 2 15 15 C 1.47398 * 125.59103 * 3.77890 * 14 12 3 16 16 C 1.54854 * 104.81146 * 204.60966 * 15 14 12 17 17 C 1.55117 * 101.77853 * 322.81177 * 16 15 14 18 18 H 1.09001 * 113.46629 * 159.24492 * 17 16 15 19 19 C 1.54044 * 108.25977 * 286.09158 * 17 16 15 20 20 N 1.46710 * 106.82981 * 135.80462 * 19 17 16 21 21 C 1.36933 * 125.32379 * 161.83954 * 20 19 17 22 22 H 1.08004 * 119.99869 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99925 * 179.97438 * 21 20 19 24 24 N 1.31614 * 119.99878 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99588 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46878 * 60.00688 * 25 23 21 27 27 H 1.48504 * 109.46787 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47481 * 300.00273 * 25 23 21 29 29 C 1.46635 * 109.35510 * 341.82111 * 20 19 17 30 30 C 1.46734 * 125.59087 * 183.47054 * 14 12 3 31 31 H 1.08998 * 111.32708 * 56.12572 * 30 14 12 32 32 H 1.09001 * 109.46935 * 185.86697 * 1 2 3 33 33 H 1.09000 * 109.47332 * 305.86893 * 1 2 3 34 34 H 1.08998 * 109.47280 * 65.87519 * 1 2 3 35 35 H 1.09003 * 109.47722 * 240.00293 * 2 1 3 36 36 H 1.09002 * 109.47274 * 120.00084 * 2 1 3 37 37 H 1.09002 * 109.47132 * 55.40397 * 5 3 2 38 38 H 1.08997 * 109.47367 * 175.39780 * 5 3 2 39 39 H 1.08000 * 119.99511 * 359.97438 * 7 6 5 40 40 H 1.07998 * 119.99789 * 180.27505 * 8 7 6 41 41 H 1.08007 * 120.00187 * 179.83468 * 9 8 7 42 42 H 1.08000 * 119.99754 * 179.97438 * 10 9 8 43 43 H 1.07999 * 119.99791 * 179.97438 * 11 10 9 44 44 H 1.09001 * 110.37153 * 323.44242 * 15 14 12 45 45 H 1.09002 * 110.37230 * 85.77577 * 15 14 12 46 46 H 1.08997 * 110.96869 * 80.93953 * 16 15 14 47 47 H 1.09010 * 110.96645 * 204.69411 * 16 15 14 48 48 H 1.08996 * 109.99056 * 255.14890 * 19 17 16 49 49 H 1.08992 * 109.98836 * 16.46643 * 19 17 16 50 50 H 0.97009 * 119.99620 * 179.97438 * 24 23 21 51 51 H 1.08996 * 109.75636 * 120.92490 * 29 20 19 52 52 H 1.08998 * 109.75887 * 241.63065 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1269 1.4437 -0.0814 5 6 1.4388 2.1960 -1.1882 6 6 1.9380 1.5876 -2.4733 7 6 3.1537 1.9835 -2.9990 8 6 3.6136 1.4222 -4.1756 9 6 2.8537 0.4718 -4.8313 10 6 1.6355 0.0797 -4.3084 11 6 1.1777 0.6378 -3.1295 12 6 1.6315 2.1196 1.2829 13 8 0.8193 3.0201 1.2613 14 7 2.1730 1.7284 2.4534 15 6 3.2276 0.7111 2.6132 16 6 3.0509 0.1813 4.0575 17 6 2.6590 1.4725 4.8227 18 1 2.1475 1.2798 5.7658 19 6 3.9199 2.3439 4.9766 20 7 3.5259 3.7210 4.6591 21 6 4.2287 4.8448 5.0028 22 1 5.1541 4.7559 5.5525 23 6 3.7522 6.0982 4.6439 24 7 2.6247 6.2065 3.9736 25 14 4.7106 7.6314 5.1135 26 1 6.0642 7.5745 4.5054 27 1 3.9947 8.8340 4.6172 28 1 4.8346 7.7044 6.5914 29 6 2.2620 3.7057 3.9157 30 6 1.8139 2.2499 3.7771 31 1 0.7467 2.1407 3.9700 32 1 -0.3633 -1.0223 0.1050 33 1 -0.3634 0.6021 0.8328 34 1 -0.3634 0.4200 -0.9379 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 0.3518 2.1252 -1.1509 38 1 1.7365 3.2435 -1.1424 39 1 3.7455 2.7290 -2.4888 40 1 4.5655 1.7282 -4.5840 41 1 3.2118 0.0352 -5.7520 42 1 1.0417 -0.6626 -4.8210 43 1 0.2258 0.3318 -2.7212 44 1 3.0887 -0.0957 1.8935 45 1 4.2121 1.1630 2.4926 46 1 2.2523 -0.5588 4.1066 47 1 3.9856 -0.2297 4.4393 48 1 4.2883 2.2885 6.0009 49 1 4.6916 2.0082 4.2840 50 1 2.2916 7.0825 3.7231 51 1 1.5081 4.2753 4.4591 52 1 2.4106 4.1404 2.9273 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076312637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:01 Heat of formation + Delta-G solvation = 17.324003 kcal Electronic energy + Delta-G solvation = -31198.905395 eV Core-core repulsion = 27356.691803 eV Total energy + Delta-G solvation = -3842.213592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.50741 -39.46797 -38.04078 -35.48073 -34.72485 -32.24630 -31.67145 -30.96819 -30.82901 -29.10266 -28.37278 -26.39244 -25.22152 -24.58223 -23.06250 -22.64809 -21.96279 -20.98859 -20.13498 -19.38130 -18.26785 -17.06255 -16.78172 -16.35841 -16.03827 -15.67760 -15.20858 -14.91752 -14.64337 -14.57840 -14.05743 -13.81416 -13.58376 -13.50832 -13.20241 -13.00495 -12.95417 -12.64468 -12.50720 -12.41112 -12.05568 -11.97217 -11.78476 -11.54577 -11.31237 -11.18874 -11.13763 -11.00162 -10.93069 -10.76098 -10.64483 -10.52600 -10.43090 -10.18067 -10.12841 -9.83134 -9.64568 -9.21888 -9.00766 -8.74543 -8.52922 -8.07912 -6.75921 -5.62469 -2.98608 1.25444 1.29890 3.11461 3.39429 3.43802 3.47565 3.50029 3.71255 4.52407 4.54730 4.69983 4.77413 4.83280 4.85814 4.91272 4.92326 5.00743 5.05263 5.16203 5.35818 5.38107 5.38534 5.48450 5.51988 5.55065 5.57101 5.58459 5.68941 5.77975 5.79070 5.84539 5.90455 5.90798 5.95297 6.01683 6.04922 6.10858 6.19557 6.26115 6.31060 6.37085 6.40335 6.41749 6.54676 6.61446 6.62208 6.68825 6.91185 6.92104 7.61318 7.72146 7.95728 8.07443 8.35069 8.68763 9.28753 9.89888 10.53606 11.46962 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003207 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.003798 B = 8728.288124 C = 9911.571705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.096 4.096 4 H 0.091 0.909 5 C -0.067 4.067 6 C -0.071 4.071 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.130 4.130 10 C -0.121 4.121 11 C -0.117 4.117 12 C 0.533 3.467 13 O -0.529 6.529 14 N -0.602 5.602 15 C 0.095 3.905 16 C -0.124 4.124 17 C -0.111 4.111 18 H 0.097 0.903 19 C 0.142 3.858 20 N -0.603 5.603 21 C -0.235 4.235 22 H 0.076 0.924 23 C -0.006 4.006 24 N -0.914 5.914 25 Si 0.910 3.090 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.176 3.824 30 C 0.116 3.884 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.033 0.967 49 H 0.017 0.983 50 H 0.253 0.747 51 H 0.050 0.950 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 -18.073 -12.527 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.117 4.117 4 H 0.109 0.891 5 C -0.105 4.105 6 C -0.071 4.071 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.148 4.148 10 C -0.139 4.139 11 C -0.135 4.135 12 C 0.320 3.680 13 O -0.405 6.405 14 N -0.336 5.336 15 C -0.028 4.028 16 C -0.162 4.162 17 C -0.131 4.131 18 H 0.115 0.885 19 C 0.016 3.984 20 N -0.329 5.329 21 C -0.363 4.363 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.561 5.561 25 Si 0.741 3.259 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.051 3.949 30 C 0.013 3.987 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.051 0.949 49 H 0.035 0.965 50 H 0.064 0.936 51 H 0.068 0.932 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.709 -17.302 -12.648 21.500 hybrid contribution 0.684 0.869 0.226 1.128 sum -1.025 -16.433 -12.422 20.625 Atomic orbital electron populations 1.21908 0.95416 1.01479 1.02556 1.21607 0.96760 0.94413 1.02684 1.21268 1.01779 0.96102 0.92569 0.89095 1.20487 1.01580 0.99442 0.88955 1.19943 0.94565 0.96273 0.96294 1.21156 0.95983 1.00157 0.96172 1.21140 0.99776 0.97097 0.95650 1.21110 0.95261 0.98327 1.00066 1.21122 0.96418 1.00125 0.96270 1.21148 0.99983 0.96930 0.95453 1.20015 0.81292 0.82964 0.83684 1.90739 1.34300 1.29320 1.86166 1.48356 1.38831 1.40237 1.06172 1.22462 0.92052 0.90894 0.97390 1.22746 1.01871 0.97174 0.94447 1.23140 0.98027 0.94234 0.97649 0.88521 1.21294 0.93315 0.86105 0.97695 1.44223 1.23970 0.99893 1.64826 1.18949 1.03309 0.83453 1.30592 0.90584 1.24837 0.97532 0.97504 1.00398 1.69993 1.20759 1.22561 1.42757 0.86232 0.78922 0.82802 0.77960 1.21248 1.21602 1.21192 1.21123 0.87981 0.88186 0.97619 1.22469 0.98054 0.97418 0.80786 0.90700 0.92791 0.92249 0.92174 0.90916 0.91085 0.89720 0.90001 0.85937 0.86245 0.86459 0.86349 0.85967 0.90724 0.91269 0.91143 0.90075 0.94874 0.96516 0.93645 0.93167 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.14 37.16 0.34 -1.34 16 2 C -0.12 -1.25 5.01 -26.73 -0.13 -1.38 16 3 C -0.10 -1.28 1.84 -91.77 -0.17 -1.45 16 4 H 0.09 1.18 8.03 -51.93 -0.42 0.76 16 5 C -0.07 -0.89 3.82 -27.89 -0.11 -1.00 16 6 C -0.07 -0.81 4.54 -104.62 -0.47 -1.28 16 7 C -0.12 -1.31 9.72 -39.58 -0.38 -1.69 16 8 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 9 C -0.13 -1.18 10.05 -39.58 -0.40 -1.57 16 10 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 11 C -0.12 -1.19 8.40 -39.59 -0.33 -1.52 16 12 C 0.53 9.52 5.59 -10.99 -0.06 9.46 16 13 O -0.53 -11.73 15.71 5.55 0.09 -11.65 16 14 N -0.60 -10.42 2.99 -162.72 -0.49 -10.91 16 15 C 0.09 1.28 6.01 -2.57 -0.02 1.27 16 16 C -0.12 -1.53 6.35 -24.63 -0.16 -1.68 16 17 C -0.11 -1.83 4.35 -87.74 -0.38 -2.21 16 18 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 19 C 0.14 2.87 6.45 -3.38 -0.02 2.85 16 20 N -0.60 -15.64 3.38 -172.35 -0.58 -16.23 16 21 C -0.23 -6.68 10.25 -15.06 -0.15 -6.83 16 22 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 23 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 24 N -0.91 -28.10 10.24 55.49 0.57 -27.53 16 25 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 C 0.18 4.52 4.88 -3.99 -0.02 4.50 16 30 C 0.12 2.29 3.57 -66.61 -0.24 2.05 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.78 7.19 -51.93 -0.37 0.41 16 34 H 0.06 0.61 4.58 -51.93 -0.24 0.37 16 35 H 0.07 0.70 6.83 -51.93 -0.35 0.35 16 36 H 0.07 0.72 5.41 -51.93 -0.28 0.44 16 37 H 0.08 1.14 6.11 -51.93 -0.32 0.82 16 38 H 0.08 1.24 8.06 -51.93 -0.42 0.83 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.12 1.10 6.18 -52.49 -0.32 0.77 16 44 H 0.07 0.80 5.10 -51.93 -0.26 0.54 16 45 H 0.07 1.02 7.18 -51.93 -0.37 0.64 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 0.86 8.08 -51.92 -0.42 0.44 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.02 0.34 6.52 -51.93 -0.34 0.00 16 50 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 51 H 0.05 1.46 7.33 -51.93 -0.38 1.08 16 52 H 0.06 1.64 6.54 -51.93 -0.34 1.30 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -34.00 390.96 -11.34 -45.34 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.19 Total: 2.59 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -3.60 Total: -5.15 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.50 Total: -54.67 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.00 -11.34 -45.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076312637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.660 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds