Wall clock time and date at job start Wed Apr 1 2020 02:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47034 * 2 1 4 4 H 1.08996 * 109.47441 * 184.54078 * 3 2 1 5 5 C 1.52994 * 109.47038 * 304.54126 * 3 2 1 6 6 C 1.50695 * 109.47384 * 295.40613 * 5 3 2 7 7 C 1.38247 * 119.99777 * 275.33230 * 6 5 3 8 8 C 1.38235 * 119.99803 * 179.78831 * 7 6 5 9 9 C 1.38226 * 120.00004 * 0.43739 * 8 7 6 10 10 C 1.38242 * 120.00407 * 359.81529 * 9 8 7 11 11 C 1.38230 * 119.99554 * 359.97430 * 10 9 8 12 12 C 1.50701 * 109.46615 * 64.54070 * 3 2 1 13 13 O 1.21284 * 119.99580 * 247.67832 * 12 3 2 14 14 N 1.34768 * 120.00121 * 67.95965 * 12 3 2 15 15 C 1.47398 * 125.59103 * 3.77890 * 14 12 3 16 16 C 1.54854 * 104.81146 * 204.60966 * 15 14 12 17 17 C 1.55117 * 101.77853 * 322.81177 * 16 15 14 18 18 H 1.09001 * 113.46629 * 159.24492 * 17 16 15 19 19 C 1.54044 * 108.25977 * 286.09158 * 17 16 15 20 20 N 1.46710 * 106.82981 * 135.80462 * 19 17 16 21 21 C 1.36933 * 125.32379 * 161.83954 * 20 19 17 22 22 H 1.08004 * 119.99869 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99925 * 179.97438 * 21 20 19 24 24 N 1.31614 * 119.99878 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99588 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46878 * 60.00688 * 25 23 21 27 27 H 1.48504 * 109.46787 * 180.02562 * 25 23 21 28 28 H 1.48492 * 109.47481 * 300.00273 * 25 23 21 29 29 C 1.46635 * 109.35510 * 341.82111 * 20 19 17 30 30 C 1.46734 * 125.59087 * 183.47054 * 14 12 3 31 31 H 1.08998 * 111.32708 * 56.12572 * 30 14 12 32 32 H 1.09001 * 109.46935 * 185.86697 * 1 2 3 33 33 H 1.09000 * 109.47332 * 305.86893 * 1 2 3 34 34 H 1.08998 * 109.47280 * 65.87519 * 1 2 3 35 35 H 1.09003 * 109.47722 * 240.00293 * 2 1 3 36 36 H 1.09002 * 109.47274 * 120.00084 * 2 1 3 37 37 H 1.09002 * 109.47132 * 55.40397 * 5 3 2 38 38 H 1.08997 * 109.47367 * 175.39780 * 5 3 2 39 39 H 1.08000 * 119.99511 * 359.97438 * 7 6 5 40 40 H 1.07998 * 119.99789 * 180.27505 * 8 7 6 41 41 H 1.08007 * 120.00187 * 179.83468 * 9 8 7 42 42 H 1.08000 * 119.99754 * 179.97438 * 10 9 8 43 43 H 1.07999 * 119.99791 * 179.97438 * 11 10 9 44 44 H 1.09001 * 110.37153 * 323.44242 * 15 14 12 45 45 H 1.09002 * 110.37230 * 85.77577 * 15 14 12 46 46 H 1.08997 * 110.96869 * 80.93953 * 16 15 14 47 47 H 1.09010 * 110.96645 * 204.69411 * 16 15 14 48 48 H 1.08996 * 109.99056 * 255.14890 * 19 17 16 49 49 H 1.08992 * 109.98836 * 16.46643 * 19 17 16 50 50 H 0.97009 * 119.99620 * 179.97438 * 24 23 21 51 51 H 1.08996 * 109.75636 * 120.92490 * 29 20 19 52 52 H 1.08998 * 109.75887 * 241.63065 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1269 1.4437 -0.0814 5 6 1.4388 2.1960 -1.1882 6 6 1.9380 1.5876 -2.4733 7 6 3.1537 1.9835 -2.9990 8 6 3.6136 1.4222 -4.1756 9 6 2.8537 0.4718 -4.8313 10 6 1.6355 0.0797 -4.3084 11 6 1.1777 0.6378 -3.1295 12 6 1.6315 2.1196 1.2829 13 8 0.8193 3.0201 1.2613 14 7 2.1730 1.7284 2.4534 15 6 3.2276 0.7111 2.6132 16 6 3.0509 0.1813 4.0575 17 6 2.6590 1.4725 4.8227 18 1 2.1475 1.2798 5.7658 19 6 3.9199 2.3439 4.9766 20 7 3.5259 3.7210 4.6591 21 6 4.2287 4.8448 5.0028 22 1 5.1541 4.7559 5.5525 23 6 3.7522 6.0982 4.6439 24 7 2.6247 6.2065 3.9736 25 14 4.7106 7.6314 5.1135 26 1 6.0642 7.5745 4.5054 27 1 3.9947 8.8340 4.6172 28 1 4.8346 7.7044 6.5914 29 6 2.2620 3.7057 3.9157 30 6 1.8139 2.2499 3.7771 31 1 0.7467 2.1407 3.9700 32 1 -0.3633 -1.0223 0.1050 33 1 -0.3634 0.6021 0.8328 34 1 -0.3634 0.4200 -0.9379 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 0.3518 2.1252 -1.1509 38 1 1.7365 3.2435 -1.1424 39 1 3.7455 2.7290 -2.4888 40 1 4.5655 1.7282 -4.5840 41 1 3.2118 0.0352 -5.7520 42 1 1.0417 -0.6626 -4.8210 43 1 0.2258 0.3318 -2.7212 44 1 3.0887 -0.0957 1.8935 45 1 4.2121 1.1630 2.4926 46 1 2.2523 -0.5588 4.1066 47 1 3.9856 -0.2297 4.4393 48 1 4.2883 2.2885 6.0009 49 1 4.6916 2.0082 4.2840 50 1 2.2916 7.0825 3.7231 51 1 1.5081 4.2753 4.4591 52 1 2.4106 4.1404 2.9273 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076312637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:00 Heat of formation + Delta-G solvation = -2.382543 kcal Electronic energy + Delta-G solvation = -31199.759935 eV Core-core repulsion = 27356.691803 eV Total energy + Delta-G solvation = -3843.068132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.85773 -40.45928 -39.38549 -36.68776 -36.43273 -33.94808 -32.67271 -32.39997 -31.73431 -30.68914 -29.52113 -27.96437 -26.71371 -26.07982 -24.27660 -23.40178 -22.99873 -22.55655 -21.44723 -20.74907 -19.63234 -18.89289 -17.99561 -17.58296 -17.21373 -16.90008 -16.64350 -16.05265 -15.98194 -15.72711 -15.60689 -15.18279 -14.90673 -14.67789 -14.34547 -14.22361 -13.96154 -13.88759 -13.79320 -13.69979 -13.41128 -13.28091 -13.00052 -12.89935 -12.88269 -12.77201 -12.44624 -12.26843 -12.20727 -11.98380 -11.89865 -11.87412 -11.82688 -11.70666 -11.58965 -11.49964 -11.30638 -10.78672 -10.58856 -9.77009 -9.58491 -9.54350 -8.91451 -7.85137 -5.24070 0.47058 0.54316 1.39834 1.44579 1.51252 1.70962 2.08112 2.46426 2.91894 3.30867 3.35506 3.57140 3.65617 3.77781 3.81435 3.83233 4.00751 4.06776 4.09528 4.19664 4.22288 4.31413 4.36569 4.43855 4.45682 4.50202 4.54915 4.57312 4.68236 4.70145 4.72980 4.79589 4.84594 4.93345 4.99600 5.03929 5.10121 5.13902 5.17113 5.20799 5.22461 5.25849 5.30766 5.40329 5.42302 5.44091 5.63313 5.65386 5.67753 5.78500 5.80504 6.16738 6.17166 6.67563 7.05998 7.27687 7.77686 8.39609 9.22631 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003207 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.003798 B = 8728.288124 C = 9911.571705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.084 4.084 4 H 0.097 0.903 5 C -0.060 4.060 6 C -0.082 4.082 7 C -0.136 4.136 8 C -0.124 4.124 9 C -0.128 4.128 10 C -0.120 4.120 11 C -0.120 4.120 12 C 0.523 3.477 13 O -0.587 6.587 14 N -0.603 5.603 15 C 0.087 3.913 16 C -0.105 4.105 17 C -0.098 4.098 18 H 0.117 0.883 19 C 0.135 3.865 20 N -0.624 5.624 21 C -0.244 4.244 22 H 0.088 0.912 23 C -0.073 4.073 24 N -0.952 5.952 25 Si 0.981 3.019 26 H -0.274 1.274 27 H -0.299 1.299 28 H -0.271 1.271 29 C 0.196 3.804 30 C 0.119 3.881 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.111 0.889 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.133 0.867 44 H 0.113 0.887 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.112 0.888 48 H 0.044 0.956 49 H 0.030 0.970 50 H 0.242 0.758 51 H -0.003 1.003 52 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 -22.501 -13.298 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.106 4.106 4 H 0.115 0.885 5 C -0.098 4.098 6 C -0.082 4.082 7 C -0.154 4.154 8 C -0.142 4.142 9 C -0.146 4.146 10 C -0.137 4.137 11 C -0.138 4.138 12 C 0.313 3.687 13 O -0.467 6.467 14 N -0.336 5.336 15 C -0.034 4.034 16 C -0.143 4.143 17 C -0.117 4.117 18 H 0.135 0.865 19 C 0.010 3.990 20 N -0.351 5.351 21 C -0.373 4.373 22 H 0.106 0.894 23 C -0.265 4.265 24 N -0.601 5.601 25 Si 0.809 3.191 26 H -0.200 1.200 27 H -0.226 1.226 28 H -0.197 1.197 29 C 0.070 3.930 30 C 0.014 3.986 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.151 0.849 44 H 0.131 0.869 45 H 0.076 0.924 46 H 0.119 0.881 47 H 0.130 0.870 48 H 0.062 0.938 49 H 0.048 0.952 50 H 0.051 0.949 51 H 0.015 0.985 52 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -0.008 -21.805 -13.395 25.590 hybrid contribution 0.193 2.268 0.434 2.317 sum 0.185 -19.537 -12.960 23.445 Atomic orbital electron populations 1.21889 0.95518 1.02344 1.01388 1.21601 0.96561 0.91967 1.04265 1.21266 1.02002 0.97645 0.89657 0.88483 1.20327 1.01111 0.97726 0.90586 1.19754 0.95239 0.97489 0.95739 1.21205 0.96218 1.00695 0.97256 1.21369 1.00641 0.97149 0.95015 1.21473 0.94970 0.97487 1.00648 1.21458 0.96578 1.00091 0.95613 1.21284 1.00138 0.96495 0.95886 1.20970 0.80318 0.82249 0.85168 1.90705 1.36973 1.31894 1.87102 1.48463 1.39432 1.40667 1.05034 1.22785 0.90068 0.90679 0.99852 1.22796 1.04445 0.95177 0.91861 1.23141 0.95272 0.95417 0.97898 0.86543 1.21594 0.95446 0.83683 0.98287 1.44547 1.23833 1.01937 1.64745 1.19458 1.03616 0.84606 1.29583 0.89379 1.25792 0.98686 1.01019 1.01031 1.70310 1.22858 1.22240 1.44670 0.85118 0.77581 0.78246 0.78196 1.20019 1.22591 1.19671 1.20643 0.87031 0.91566 0.93803 1.22181 0.98414 0.94319 0.83716 0.91191 0.90274 0.95420 0.91961 0.88815 0.89686 0.90467 0.93593 0.87047 0.84676 0.83838 0.83655 0.84919 0.86925 0.92431 0.88058 0.86967 0.93800 0.95240 0.94900 0.98465 0.98126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.14 71.98 0.66 -2.42 16 2 C -0.11 -2.02 5.01 30.60 0.15 -1.87 16 3 C -0.08 -2.28 1.84 -11.54 -0.02 -2.30 16 4 H 0.10 2.50 8.03 -2.39 -0.02 2.48 16 5 C -0.06 -1.69 3.82 29.84 0.11 -1.58 16 6 C -0.08 -1.87 4.54 -19.87 -0.09 -1.96 16 7 C -0.14 -3.05 9.72 22.27 0.22 -2.83 16 8 C -0.12 -2.23 10.05 22.27 0.22 -2.00 16 9 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 10 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 11 C -0.12 -2.20 8.40 22.27 0.19 -2.01 16 12 C 0.52 19.73 5.59 87.66 0.49 20.22 16 13 O -0.59 -28.63 15.71 -3.04 -0.05 -28.67 16 14 N -0.60 -21.13 2.99 -787.12 -2.35 -23.48 16 15 C 0.09 2.12 6.01 86.84 0.52 2.64 16 16 C -0.10 -2.09 6.35 31.95 0.20 -1.89 16 17 C -0.10 -3.02 4.35 -8.93 -0.04 -3.06 16 18 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 19 C 0.13 5.27 6.45 86.69 0.56 5.83 16 20 N -0.62 -33.53 3.38 -699.20 -2.36 -35.89 16 21 C -0.24 -14.25 10.25 84.03 0.86 -13.39 16 22 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 23 C -0.07 -4.41 5.48 84.86 0.47 -3.94 16 24 N -0.95 -62.94 10.24 21.65 0.22 -62.72 16 25 Si 0.98 48.33 29.55 68.60 2.03 50.35 16 26 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 28 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 29 C 0.20 10.81 4.88 86.34 0.42 11.23 16 30 C 0.12 4.81 3.57 45.72 0.16 4.97 16 31 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.03 0.72 7.19 -2.39 -0.02 0.71 16 34 H 0.06 1.20 4.58 -2.39 -0.01 1.19 16 35 H 0.09 1.46 6.83 -2.39 -0.02 1.45 16 36 H 0.08 1.37 5.41 -2.39 -0.01 1.36 16 37 H 0.08 2.24 6.11 -2.39 -0.01 2.23 16 38 H 0.05 1.58 8.06 -2.39 -0.02 1.56 16 39 H 0.11 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.13 2.09 6.18 -2.91 -0.02 2.08 16 44 H 0.11 1.91 5.10 -2.39 -0.01 1.90 16 45 H 0.06 1.56 7.18 -2.39 -0.02 1.54 16 46 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.11 1.68 8.08 -2.38 -0.02 1.66 16 48 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.03 1.11 6.52 -2.39 -0.02 1.09 16 50 H 0.24 15.76 8.31 -92.70 -0.77 14.99 16 51 H 0.00 -0.18 7.33 -2.39 -0.02 -0.20 16 52 H 0.00 0.03 6.54 -2.39 -0.02 0.02 16 Total: -1.00 -84.00 390.96 3.93 -80.07 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.91 Total: 17.96 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 5.53 Total: 2.37 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -4.49 Total: -122.09 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.05 Total: -28.67 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.35 kcal Total: -84.00 3.93 -80.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076312637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.692 kcal (2) G-P(sol) polarization free energy of solvation -84.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds