Wall clock time and date at job start Wed Apr 1 2020 01:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46904 * 2 1 4 4 C 1.52997 * 109.47231 * 240.00200 * 2 1 3 5 5 C 1.50694 * 109.47460 * 59.99688 * 4 2 1 6 6 O 1.21283 * 119.99674 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00104 * 179.97438 * 5 4 2 8 8 C 1.47402 * 125.59103 * 0.02653 * 7 5 4 9 9 C 1.54850 * 104.81228 * 204.60997 * 8 7 5 10 10 C 1.55121 * 101.77554 * 322.81391 * 9 8 7 11 11 H 1.09007 * 113.46185 * 159.24448 * 10 9 8 12 12 C 1.54048 * 108.26154 * 286.09007 * 10 9 8 13 13 N 1.46702 * 106.82615 * 135.80572 * 12 10 9 14 14 C 1.36938 * 125.31992 * 161.80074 * 13 12 10 15 15 H 1.07996 * 119.99935 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00052 * 180.02562 * 14 13 12 17 17 N 1.31621 * 120.00330 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00267 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46748 * 59.99574 * 18 16 14 20 20 H 1.48493 * 109.47622 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46893 * 300.00013 * 18 16 14 22 22 C 1.46632 * 109.36004 * 341.82585 * 13 12 10 23 23 C 1.46730 * 125.58765 * 179.72186 * 7 5 4 24 24 H 1.08997 * 111.33100 * 56.12602 * 23 7 5 25 25 C 1.50703 * 109.46734 * 119.99730 * 2 1 3 26 26 C 1.38234 * 120.00257 * 300.00226 * 25 2 1 27 27 C 1.38230 * 119.99864 * 179.97438 * 26 25 2 28 28 C 1.38235 * 120.00326 * 0.02562 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99499 * 120.02743 * 25 2 1 31 31 H 1.09001 * 109.47305 * 299.99818 * 1 2 3 32 32 H 1.08993 * 109.46731 * 60.00338 * 1 2 3 33 33 H 1.09002 * 109.46630 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47552 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47377 * 299.99828 * 3 2 1 36 36 H 1.09008 * 109.47644 * 59.99899 * 3 2 1 37 37 H 1.08999 * 109.46950 * 180.02562 * 4 2 1 38 38 H 1.09011 * 109.47062 * 299.99795 * 4 2 1 39 39 H 1.08999 * 110.37067 * 323.44428 * 8 7 5 40 40 H 1.08997 * 110.36813 * 85.77426 * 8 7 5 41 41 H 1.08997 * 110.96988 * 80.93818 * 9 8 7 42 42 H 1.09000 * 110.96407 * 204.68986 * 9 8 7 43 43 H 1.08993 * 109.98734 * 255.15371 * 12 10 9 44 44 H 1.08999 * 109.98410 * 16.42657 * 12 10 9 45 45 H 0.96994 * 120.00262 * 180.02562 * 17 16 14 46 46 H 1.09003 * 109.75965 * 120.92656 * 22 13 12 47 47 H 1.09004 * 109.75327 * 241.62970 * 22 13 12 48 48 H 1.08002 * 119.99744 * 359.97438 * 26 25 2 49 49 H 1.08000 * 120.00356 * 179.97438 * 27 26 25 50 50 H 1.08000 * 120.00616 * 179.70664 * 28 27 26 51 51 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 52 52 H 1.07997 * 120.00459 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 8 0.8408 0.9755 -2.3684 7 7 1.8638 -0.4710 -3.7038 8 6 2.6997 -1.6530 -3.9813 9 6 3.2858 -1.4008 -5.3923 10 6 2.0943 -0.7167 -6.1124 11 1 2.3902 -0.1388 -6.9880 12 6 1.0333 -1.7911 -6.4176 13 7 -0.2685 -1.2153 -6.0627 14 6 -1.4830 -1.6792 -6.4927 15 1 -1.5326 -2.5367 -7.1473 16 6 -2.6504 -1.0472 -6.0872 17 7 -2.5901 -0.0024 -5.2890 18 14 -4.3074 -1.6803 -6.6732 19 1 -4.4863 -3.0853 -6.2269 20 1 -5.3892 -0.8385 -6.1022 21 1 -4.3637 -1.6210 -8.1560 22 6 -0.0658 -0.0651 -5.1761 23 6 1.4397 0.1188 -4.9786 24 1 1.7257 1.1685 -5.0444 25 6 2.0323 -0.7104 1.2305 26 6 1.6983 -0.2381 2.4860 27 6 2.1586 -0.8901 3.6147 28 6 2.9533 -2.0140 3.4879 29 6 3.2873 -2.4863 2.2324 30 6 2.8275 -1.8340 1.1037 31 1 -0.3634 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.1301 -0.7216 -1.2490 38 1 1.6768 -1.7490 -1.2492 39 1 3.5008 -1.7322 -3.2464 40 1 2.0910 -2.5571 -3.9793 41 1 4.1469 -0.7344 -5.3437 42 1 3.5485 -2.3401 -5.8790 43 1 1.0528 -2.0433 -7.4777 44 1 1.2228 -2.6823 -5.8192 45 1 -3.4059 0.4390 -5.0054 46 1 -0.4920 0.8296 -5.6299 47 1 -0.5426 -0.2531 -4.2140 48 1 1.0777 0.6402 2.5851 49 1 1.8980 -0.5209 4.5956 50 1 3.3169 -2.5206 4.3697 51 1 3.9086 -3.3641 2.1333 52 1 3.0884 -2.2030 0.1228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076608760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:59 Heat of formation + Delta-G solvation = 24.201536 kcal Electronic energy + Delta-G solvation = -31230.180462 eV Core-core repulsion = 27388.265102 eV Total energy + Delta-G solvation = -3841.915360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.57398 -39.64762 -38.09656 -35.53822 -34.75389 -32.22532 -31.17415 -30.85795 -29.97571 -29.13641 -27.75136 -26.99060 -26.14865 -24.66695 -23.28777 -22.65218 -22.13390 -20.75127 -19.86187 -19.11272 -18.20993 -17.48211 -16.80816 -16.38853 -15.72116 -15.21147 -15.01435 -14.95111 -14.58983 -14.33816 -13.95981 -13.84725 -13.69426 -13.42600 -13.29749 -13.15777 -12.87128 -12.54455 -12.46147 -12.14633 -11.97083 -11.83407 -11.68945 -11.53301 -11.43580 -11.13582 -11.07634 -10.93772 -10.81946 -10.72049 -10.68418 -10.51034 -10.39456 -10.20660 -10.13465 -9.84802 -9.66064 -9.04390 -8.99684 -8.73105 -8.54429 -8.08672 -6.77466 -5.64079 -3.00063 1.30360 1.32180 3.07510 3.38941 3.43076 3.47014 3.49277 3.72068 4.51669 4.54330 4.63225 4.79005 4.81947 4.90345 5.00105 5.02159 5.03789 5.16530 5.21323 5.38288 5.41868 5.50303 5.51844 5.52944 5.59472 5.65104 5.75069 5.77751 5.79417 5.89097 5.90541 5.93304 5.95174 6.03172 6.10495 6.21040 6.24133 6.25260 6.35637 6.37338 6.42644 6.52018 6.57825 6.59657 6.64512 6.67641 6.79968 6.90307 6.94686 7.59728 7.69897 7.92860 8.05676 8.33409 8.68210 9.27422 9.88428 10.51934 11.45456 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.003176 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.741220 B = 8813.052317 C = 9815.052881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.005 4.005 3 C -0.148 4.148 4 C -0.128 4.128 5 C 0.528 3.472 6 O -0.523 6.523 7 N -0.604 5.604 8 C 0.101 3.899 9 C -0.124 4.124 10 C -0.111 4.111 11 H 0.097 0.903 12 C 0.142 3.858 13 N -0.602 5.602 14 C -0.235 4.235 15 H 0.076 0.924 16 C -0.005 4.005 17 N -0.914 5.914 18 Si 0.910 3.090 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.177 3.823 23 C 0.116 3.884 24 H 0.076 0.924 25 C -0.061 4.061 26 C -0.114 4.114 27 C -0.119 4.119 28 C -0.132 4.132 29 C -0.119 4.119 30 C -0.126 4.126 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.017 0.983 45 H 0.253 0.747 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.119 0.881 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.111 -2.772 12.571 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 C -0.205 4.205 4 C -0.168 4.168 5 C 0.317 3.683 6 O -0.400 6.400 7 N -0.338 5.338 8 C -0.023 4.023 9 C -0.162 4.162 10 C -0.131 4.131 11 H 0.115 0.885 12 C 0.016 3.984 13 N -0.329 5.329 14 C -0.363 4.363 15 H 0.094 0.906 16 C -0.202 4.202 17 N -0.561 5.561 18 Si 0.741 3.259 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.052 3.948 23 C 0.013 3.987 24 H 0.094 0.906 25 C -0.061 4.061 26 C -0.132 4.132 27 C -0.137 4.137 28 C -0.150 4.150 29 C -0.137 4.137 30 C -0.144 4.144 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.051 0.949 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.137 0.863 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.471 -2.142 12.752 20.163 hybrid contribution -0.851 -0.585 -0.200 1.052 sum 14.619 -2.727 12.552 19.461 Atomic orbital electron populations 1.22134 0.92604 1.01958 1.04018 1.19210 0.96742 0.95061 0.89530 1.22117 0.99839 0.94626 1.03916 1.21812 1.01705 1.00646 0.92634 1.20039 0.80442 0.84698 0.83090 1.90601 1.37342 1.26594 1.85416 1.48449 1.50859 1.28998 1.05492 1.22299 0.93622 0.89513 0.96838 1.22745 0.97506 1.01150 0.94839 1.23148 0.94977 0.97740 0.97229 0.88505 1.21294 0.85948 0.93622 0.97558 1.44218 1.00266 1.32837 1.55580 1.18946 0.82105 1.10624 1.24611 0.90591 1.24826 0.97725 0.97948 0.99717 1.69981 1.26592 1.22038 1.37486 0.86237 0.83745 0.77858 0.78103 1.21250 1.21594 1.21190 1.21122 0.87092 0.91070 0.95564 1.22472 0.98570 0.96217 0.81490 0.90580 1.19972 0.96339 0.95132 0.94640 1.20998 1.00133 1.00152 0.91876 1.21116 0.98209 0.96036 0.98384 1.21098 0.99378 0.97180 0.97348 1.21130 1.00088 0.99787 0.92655 1.21210 0.98444 0.95804 0.98902 0.93121 0.88603 0.93373 0.93655 0.88969 0.93025 0.89313 0.89030 0.91366 0.91166 0.91130 0.90048 0.94869 0.96510 0.93644 0.93118 0.92728 0.86080 0.86342 0.86486 0.86299 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 7.99 37.16 0.30 -1.99 16 2 C 0.00 -0.07 0.60 -155.66 -0.09 -0.16 16 3 C -0.15 -1.95 7.99 37.15 0.30 -1.66 16 4 C -0.13 -1.68 2.42 -27.89 -0.07 -1.75 16 5 C 0.53 9.08 6.81 -10.99 -0.07 9.01 16 6 O -0.52 -10.70 11.23 5.55 0.06 -10.63 16 7 N -0.60 -10.19 2.99 -162.73 -0.49 -10.68 16 8 C 0.10 1.32 6.22 -2.57 -0.02 1.30 16 9 C -0.12 -1.49 6.35 -24.63 -0.16 -1.65 16 10 C -0.11 -1.80 4.35 -87.73 -0.38 -2.18 16 11 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 12 C 0.14 2.83 6.45 -3.38 -0.02 2.81 16 13 N -0.60 -15.42 3.38 -172.36 -0.58 -16.00 16 14 C -0.23 -6.60 10.25 -15.06 -0.15 -6.76 16 15 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 16 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 17 N -0.91 -27.70 10.24 55.49 0.57 -27.14 16 18 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.18 4.44 4.91 -3.99 -0.02 4.42 16 23 C 0.12 2.23 3.55 -66.61 -0.24 2.00 16 24 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 25 C -0.06 -0.72 4.76 -104.62 -0.50 -1.22 16 26 C -0.11 -1.27 8.71 -39.59 -0.34 -1.62 16 27 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 28 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 29 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 30 C -0.13 -1.36 8.98 -39.58 -0.36 -1.71 16 31 H 0.05 0.69 7.39 -51.93 -0.38 0.30 16 32 H 0.10 1.78 5.51 -51.93 -0.29 1.50 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.45 5.51 -51.93 -0.29 1.16 16 36 H 0.05 0.62 7.39 -51.92 -0.38 0.24 16 37 H 0.09 0.96 7.21 -51.93 -0.37 0.59 16 38 H 0.09 1.16 7.51 -51.92 -0.39 0.77 16 39 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 40 H 0.07 0.99 7.18 -51.93 -0.37 0.62 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.02 0.33 6.52 -51.93 -0.34 0.00 16 45 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.05 1.45 7.33 -51.93 -0.38 1.07 16 47 H 0.05 1.58 6.66 -51.93 -0.35 1.23 16 48 H 0.12 1.26 7.10 -52.49 -0.37 0.89 16 49 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 50 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 51 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 52 H 0.12 1.17 5.89 -52.49 -0.31 0.86 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -32.90 390.58 -11.07 -43.97 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -8.38 Total: 3.29 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -3.11 Total: -6.19 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.50 Total: -53.82 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.06 Total: -10.63 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.90 -11.07 -43.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076608760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.174 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds