Wall clock time and date at job start Wed Apr 1 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46904 * 2 1 4 4 C 1.52997 * 109.47231 * 240.00200 * 2 1 3 5 5 C 1.50694 * 109.47460 * 59.99688 * 4 2 1 6 6 O 1.21283 * 119.99674 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00104 * 179.97438 * 5 4 2 8 8 C 1.47402 * 125.59103 * 0.02653 * 7 5 4 9 9 C 1.54850 * 104.81228 * 204.60997 * 8 7 5 10 10 C 1.55121 * 101.77554 * 322.81391 * 9 8 7 11 11 H 1.09007 * 113.46185 * 159.24448 * 10 9 8 12 12 C 1.54048 * 108.26154 * 286.09007 * 10 9 8 13 13 N 1.46702 * 106.82615 * 135.80572 * 12 10 9 14 14 C 1.36938 * 125.31992 * 161.80074 * 13 12 10 15 15 H 1.07996 * 119.99935 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00052 * 180.02562 * 14 13 12 17 17 N 1.31621 * 120.00330 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00267 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46748 * 59.99574 * 18 16 14 20 20 H 1.48493 * 109.47622 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46893 * 300.00013 * 18 16 14 22 22 C 1.46632 * 109.36004 * 341.82585 * 13 12 10 23 23 C 1.46730 * 125.58765 * 179.72186 * 7 5 4 24 24 H 1.08997 * 111.33100 * 56.12602 * 23 7 5 25 25 C 1.50703 * 109.46734 * 119.99730 * 2 1 3 26 26 C 1.38234 * 120.00257 * 300.00226 * 25 2 1 27 27 C 1.38230 * 119.99864 * 179.97438 * 26 25 2 28 28 C 1.38235 * 120.00326 * 0.02562 * 27 26 25 29 29 C 1.38234 * 119.99814 * 359.97438 * 28 27 26 30 30 C 1.38234 * 119.99499 * 120.02743 * 25 2 1 31 31 H 1.09001 * 109.47305 * 299.99818 * 1 2 3 32 32 H 1.08993 * 109.46731 * 60.00338 * 1 2 3 33 33 H 1.09002 * 109.46630 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47552 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47377 * 299.99828 * 3 2 1 36 36 H 1.09008 * 109.47644 * 59.99899 * 3 2 1 37 37 H 1.08999 * 109.46950 * 180.02562 * 4 2 1 38 38 H 1.09011 * 109.47062 * 299.99795 * 4 2 1 39 39 H 1.08999 * 110.37067 * 323.44428 * 8 7 5 40 40 H 1.08997 * 110.36813 * 85.77426 * 8 7 5 41 41 H 1.08997 * 110.96988 * 80.93818 * 9 8 7 42 42 H 1.09000 * 110.96407 * 204.68986 * 9 8 7 43 43 H 1.08993 * 109.98734 * 255.15371 * 12 10 9 44 44 H 1.08999 * 109.98410 * 16.42657 * 12 10 9 45 45 H 0.96994 * 120.00262 * 180.02562 * 17 16 14 46 46 H 1.09003 * 109.75965 * 120.92656 * 22 13 12 47 47 H 1.09004 * 109.75327 * 241.62970 * 22 13 12 48 48 H 1.08002 * 119.99744 * 359.97438 * 26 25 2 49 49 H 1.08000 * 120.00356 * 179.97438 * 27 26 25 50 50 H 1.08000 * 120.00616 * 179.70664 * 28 27 26 51 51 H 1.08001 * 120.00299 * 179.97438 * 29 28 27 52 52 H 1.07997 * 120.00459 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 8 0.8408 0.9755 -2.3684 7 7 1.8638 -0.4710 -3.7038 8 6 2.6997 -1.6530 -3.9813 9 6 3.2858 -1.4008 -5.3923 10 6 2.0943 -0.7167 -6.1124 11 1 2.3902 -0.1388 -6.9880 12 6 1.0333 -1.7911 -6.4176 13 7 -0.2685 -1.2153 -6.0627 14 6 -1.4830 -1.6792 -6.4927 15 1 -1.5326 -2.5367 -7.1473 16 6 -2.6504 -1.0472 -6.0872 17 7 -2.5901 -0.0024 -5.2890 18 14 -4.3074 -1.6803 -6.6732 19 1 -4.4863 -3.0853 -6.2269 20 1 -5.3892 -0.8385 -6.1022 21 1 -4.3637 -1.6210 -8.1560 22 6 -0.0658 -0.0651 -5.1761 23 6 1.4397 0.1188 -4.9786 24 1 1.7257 1.1685 -5.0444 25 6 2.0323 -0.7104 1.2305 26 6 1.6983 -0.2381 2.4860 27 6 2.1586 -0.8901 3.6147 28 6 2.9533 -2.0140 3.4879 29 6 3.2873 -2.4863 2.2324 30 6 2.8275 -1.8340 1.1037 31 1 -0.3634 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.1301 -0.7216 -1.2490 38 1 1.6768 -1.7490 -1.2492 39 1 3.5008 -1.7322 -3.2464 40 1 2.0910 -2.5571 -3.9793 41 1 4.1469 -0.7344 -5.3437 42 1 3.5485 -2.3401 -5.8790 43 1 1.0528 -2.0433 -7.4777 44 1 1.2228 -2.6823 -5.8192 45 1 -3.4059 0.4390 -5.0054 46 1 -0.4920 0.8296 -5.6299 47 1 -0.5426 -0.2531 -4.2140 48 1 1.0777 0.6402 2.5851 49 1 1.8980 -0.5209 4.5956 50 1 3.3169 -2.5206 4.3697 51 1 3.9086 -3.3641 2.1333 52 1 3.0884 -2.2030 0.1228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076608760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:57 Heat of formation + Delta-G solvation = 5.851133 kcal Electronic energy + Delta-G solvation = -31230.976195 eV Core-core repulsion = 27388.265102 eV Total energy + Delta-G solvation = -3842.711093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.82169 -40.72476 -39.34538 -36.72324 -36.38406 -33.96967 -32.45701 -31.95543 -31.04478 -30.51361 -29.06561 -28.16287 -27.66763 -26.55663 -24.30704 -23.65292 -23.09127 -22.47066 -21.13434 -20.35085 -19.47129 -18.92407 -18.41932 -17.53774 -16.91284 -16.86630 -16.20695 -15.98624 -15.80245 -15.67826 -15.46209 -15.08258 -14.88903 -14.62430 -14.45253 -14.32871 -14.17743 -13.91648 -13.75732 -13.43687 -13.29542 -13.03250 -12.96241 -12.90538 -12.77800 -12.67541 -12.37726 -12.32616 -12.27206 -12.16233 -11.90942 -11.85574 -11.83659 -11.62846 -11.57330 -11.42583 -11.36236 -10.74390 -10.37512 -9.74584 -9.55868 -9.46824 -8.89305 -7.83741 -5.22189 0.52399 0.57130 1.40975 1.45195 1.51848 1.75780 2.13058 2.47468 2.94909 3.32369 3.39941 3.60513 3.61542 3.71952 3.84043 3.98366 4.02251 4.09563 4.21186 4.22046 4.28412 4.32765 4.36017 4.48108 4.53925 4.57174 4.64718 4.68510 4.69754 4.73460 4.78105 4.80116 4.88926 4.96826 5.01373 5.05206 5.08591 5.15268 5.19555 5.20925 5.23652 5.32581 5.41246 5.44542 5.45145 5.49175 5.67666 5.69246 5.69737 5.79913 5.83104 6.18952 6.19240 6.73860 7.08154 7.36848 7.79605 8.41184 9.23847 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.003176 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.741220 B = 8813.052317 C = 9815.052881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.001 3.999 3 C -0.142 4.142 4 C -0.116 4.116 5 C 0.516 3.484 6 O -0.567 6.567 7 N -0.608 5.608 8 C 0.093 3.907 9 C -0.106 4.106 10 C -0.100 4.100 11 H 0.114 0.886 12 C 0.135 3.865 13 N -0.624 5.624 14 C -0.243 4.243 15 H 0.087 0.913 16 C -0.070 4.070 17 N -0.950 5.950 18 Si 0.978 3.022 19 H -0.275 1.275 20 H -0.299 1.299 21 H -0.272 1.272 22 C 0.197 3.803 23 C 0.120 3.880 24 H 0.070 0.930 25 C -0.076 4.076 26 C -0.129 4.129 27 C -0.126 4.126 28 C -0.133 4.133 29 C -0.122 4.122 30 C -0.133 4.133 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.041 0.959 44 H 0.031 0.969 45 H 0.242 0.758 46 H -0.003 1.003 47 H 0.003 0.997 48 H 0.118 0.882 49 H 0.137 0.863 50 H 0.141 0.859 51 H 0.144 0.856 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.737 -5.593 13.189 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.001 3.999 3 C -0.199 4.199 4 C -0.155 4.155 5 C 0.306 3.694 6 O -0.446 6.446 7 N -0.341 5.341 8 C -0.029 4.029 9 C -0.144 4.144 10 C -0.119 4.119 11 H 0.132 0.868 12 C 0.010 3.990 13 N -0.351 5.351 14 C -0.372 4.372 15 H 0.105 0.895 16 C -0.263 4.263 17 N -0.599 5.599 18 Si 0.806 3.194 19 H -0.201 1.201 20 H -0.226 1.226 21 H -0.198 1.198 22 C 0.070 3.930 23 C 0.015 3.985 24 H 0.088 0.912 25 C -0.076 4.076 26 C -0.147 4.147 27 C -0.144 4.144 28 C -0.151 4.151 29 C -0.139 4.139 30 C -0.151 4.151 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.015 0.985 47 H 0.021 0.979 48 H 0.136 0.864 49 H 0.154 0.846 50 H 0.159 0.841 51 H 0.161 0.839 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 19.155 -5.020 13.346 23.880 hybrid contribution -2.005 0.274 -0.363 2.056 sum 17.151 -4.746 12.983 22.028 Atomic orbital electron populations 1.22025 0.95012 1.00856 1.02330 1.19080 0.94748 0.95344 0.90738 1.22009 1.00639 0.94634 1.02608 1.21819 1.03557 1.00090 0.90052 1.20926 0.79738 0.84405 0.84317 1.90607 1.39096 1.28770 1.86170 1.48560 1.51099 1.30030 1.04415 1.22625 0.93990 0.87187 0.99093 1.22784 0.96027 1.02566 0.92973 1.23140 0.95646 0.96270 0.96849 0.86816 1.21585 0.84336 0.94990 0.98068 1.44540 1.01843 1.33102 1.55575 1.19433 0.83474 1.10445 1.23857 0.89521 1.25744 1.01646 0.98495 1.00448 1.70289 1.26530 1.23721 1.39345 0.85155 0.78857 0.77319 0.78033 1.20097 1.22583 1.19796 1.20648 0.90941 0.88976 0.92392 1.22143 0.94672 0.97147 0.84529 0.91191 1.19827 0.97800 0.96112 0.93834 1.21118 1.00662 1.00582 0.92349 1.21384 0.98032 0.96192 0.98754 1.21469 0.98529 0.96759 0.98375 1.21463 0.99883 1.00295 0.92303 1.21416 0.98179 0.95312 1.00186 0.92275 0.92723 0.94067 0.92081 0.92052 0.92509 0.85825 0.88192 0.87007 0.92249 0.88310 0.87128 0.94029 0.95137 0.94899 0.98506 0.97905 0.86368 0.84550 0.84084 0.83851 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 7.99 71.98 0.58 -4.15 16 2 C 0.00 0.04 0.60 -52.93 -0.03 0.00 16 3 C -0.14 -3.82 7.99 71.98 0.57 -3.24 16 4 C -0.12 -2.90 2.42 29.85 0.07 -2.82 16 5 C 0.52 18.18 6.81 87.66 0.60 18.78 16 6 O -0.57 -25.18 11.23 -3.04 -0.03 -25.22 16 7 N -0.61 -20.26 2.99 -787.14 -2.35 -22.62 16 8 C 0.09 2.09 6.22 86.84 0.54 2.63 16 9 C -0.11 -2.03 6.35 31.95 0.20 -1.83 16 10 C -0.10 -3.02 4.35 -8.92 -0.04 -3.05 16 11 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 12 C 0.13 5.20 6.45 86.70 0.56 5.75 16 13 N -0.62 -32.95 3.38 -699.21 -2.36 -35.31 16 14 C -0.24 -14.05 10.25 84.03 0.86 -13.19 16 15 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 16 C -0.07 -4.23 5.48 84.86 0.47 -3.76 16 17 N -0.95 -61.77 10.24 21.65 0.22 -61.55 16 18 Si 0.98 47.86 29.55 68.60 2.03 49.89 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 C 0.20 10.58 4.91 86.34 0.42 11.00 16 23 C 0.12 4.72 3.55 45.72 0.16 4.88 16 24 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 25 C -0.08 -1.70 4.76 -19.87 -0.09 -1.79 16 26 C -0.13 -2.76 8.71 22.27 0.19 -2.56 16 27 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 28 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 29 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 30 C -0.13 -2.49 8.98 22.27 0.20 -2.29 16 31 H 0.06 1.74 7.39 -2.39 -0.02 1.72 16 32 H 0.05 2.26 5.51 -2.39 -0.01 2.24 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 2.06 5.51 -2.39 -0.01 2.05 16 36 H 0.06 1.41 7.39 -2.38 -0.02 1.40 16 37 H 0.12 2.22 7.21 -2.39 -0.02 2.21 16 38 H 0.10 2.36 7.51 -2.38 -0.02 2.34 16 39 H 0.11 1.61 7.45 -2.39 -0.02 1.59 16 40 H 0.06 1.50 7.18 -2.39 -0.02 1.48 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.11 1.60 8.08 -2.39 -0.02 1.58 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.03 1.12 6.52 -2.39 -0.02 1.11 16 45 H 0.24 15.53 8.31 -92.71 -0.77 14.75 16 46 H 0.00 -0.20 7.33 -2.39 -0.02 -0.22 16 47 H 0.00 0.17 6.66 -2.38 -0.02 0.16 16 48 H 0.12 2.47 7.10 -2.91 -0.02 2.45 16 49 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 50 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 51 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 52 H 0.14 2.08 5.89 -2.91 -0.02 2.06 16 Total: -1.00 -80.76 390.58 4.34 -76.43 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.90 Total: 19.58 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.93 Total: -1.20 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -4.49 Total: -119.48 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.03 Total: -25.22 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -80.76 4.34 -76.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076608760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.277 kcal (2) G-P(sol) polarization free energy of solvation -80.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds