Wall clock time and date at job start Wed Apr 1 2020 01:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47251 * 2 1 4 4 C 1.53001 * 109.47143 * 119.99766 * 2 1 3 5 5 H 1.09005 * 109.46843 * 294.18071 * 4 2 1 6 6 C 1.50703 * 109.47283 * 174.18310 * 4 2 1 7 7 O 1.21276 * 119.99839 * 322.78914 * 6 4 2 8 8 N 1.34770 * 119.99966 * 142.79330 * 6 4 2 9 9 C 1.47811 * 135.01506 * 4.63921 * 8 6 4 10 10 C 1.54652 * 85.79298 * 153.81132 * 9 8 6 11 11 H 1.09002 * 114.44111 * 139.83915 * 10 9 8 12 12 C 1.53002 * 110.84300 * 270.23404 * 10 9 8 13 13 C 1.52622 * 109.52665 * 143.76968 * 12 10 9 14 14 N 1.46615 * 108.26306 * 301.23527 * 13 12 10 15 15 C 1.36939 * 119.89030 * 237.28883 * 14 13 12 16 16 H 1.07993 * 119.99668 * 24.63616 * 15 14 13 17 17 C 1.38812 * 119.99734 * 204.90637 * 15 14 13 18 18 N 1.31615 * 120.00137 * 7.03588 * 17 15 14 19 19 Si 1.86804 * 119.99573 * 187.03179 * 17 15 14 20 20 H 1.48495 * 109.47291 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46875 * 119.99941 * 19 17 15 22 22 H 1.48500 * 109.46880 * 240.00095 * 19 17 15 23 23 C 1.45678 * 120.21735 * 57.01924 * 14 13 12 24 24 C 1.46816 * 135.01117 * 184.64814 * 8 6 4 25 25 H 1.09005 * 110.91281 * 94.53783 * 24 8 6 26 26 C 1.50697 * 109.47095 * 54.17917 * 4 2 1 27 27 C 1.38233 * 119.99810 * 59.73097 * 26 4 2 28 28 C 1.38238 * 119.99903 * 179.74629 * 27 26 4 29 29 C 1.38232 * 119.99908 * 0.52658 * 28 27 26 30 30 C 1.38234 * 120.00131 * 359.74390 * 29 28 27 31 31 C 1.38237 * 120.00147 * 359.97438 * 30 29 28 32 32 H 1.09003 * 109.47606 * 300.00188 * 1 2 3 33 33 H 1.09000 * 109.47200 * 59.99815 * 1 2 3 34 34 H 1.09000 * 109.47451 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47117 * 239.99837 * 2 1 3 36 36 H 1.09000 * 109.47574 * 186.97567 * 3 2 1 37 37 H 1.09001 * 109.46736 * 306.98140 * 3 2 1 38 38 H 1.09002 * 109.47295 * 66.97894 * 3 2 1 39 39 H 1.09003 * 113.81560 * 39.59826 * 9 8 6 40 40 H 1.08996 * 113.82364 * 268.03269 * 9 8 6 41 41 H 1.09010 * 109.47512 * 263.88414 * 12 10 9 42 42 H 1.09004 * 109.47919 * 23.89527 * 12 10 9 43 43 H 1.08995 * 109.65395 * 181.50885 * 13 12 10 44 44 H 1.09003 * 109.59715 * 60.92582 * 13 12 10 45 45 H 0.97004 * 120.00005 * 180.02562 * 18 17 15 46 46 H 1.09001 * 108.71892 * 82.01619 * 23 14 13 47 47 H 1.08997 * 108.71665 * 200.03920 * 23 14 13 48 48 H 1.07997 * 120.00366 * 359.97438 * 27 26 4 49 49 H 1.08001 * 119.99672 * 180.29440 * 28 27 26 50 50 H 1.08005 * 119.99726 * 179.77178 * 29 28 27 51 51 H 1.08003 * 120.00141 * 180.02562 * 30 29 28 52 52 H 1.07992 * 120.00377 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7642 -0.1506 2.1362 6 6 3.5401 -0.8472 1.1794 7 8 4.0816 -1.0623 0.1158 8 7 4.2798 -0.7208 2.2989 9 6 3.9801 -0.5490 3.7361 10 6 5.3532 -1.2155 3.9853 11 1 5.9300 -0.7705 4.7962 12 6 5.2098 -2.7352 4.0900 13 6 6.4245 -3.4071 3.4558 14 7 6.5064 -2.9808 2.0553 15 6 6.5010 -3.9167 1.0557 16 1 6.0531 -4.8847 1.2248 17 6 7.0762 -3.6230 -0.1731 18 7 7.7470 -2.5023 -0.3346 19 14 6.8980 -4.8187 -1.5973 20 1 6.1034 -5.9945 -1.1600 21 1 6.2052 -4.1454 -2.7250 22 1 8.2433 -5.2663 -2.0390 23 6 6.5877 -1.5646 1.7236 24 6 5.7173 -0.6965 2.5964 25 1 6.0894 0.3274 2.6347 26 6 1.4234 -2.0943 1.3235 27 6 1.6305 -3.0010 0.3009 28 6 1.0693 -4.2624 0.3714 29 6 0.2921 -4.6132 1.4594 30 6 0.0804 -3.7046 2.4794 31 6 0.6464 -2.4452 2.4117 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 3.1228 1.4451 -0.1248 37 1 1.5782 1.9911 -0.8210 38 1 1.7822 1.9191 0.9458 39 1 3.1337 -1.1417 4.0831 40 1 3.9319 0.4923 4.0544 41 1 5.1408 -3.0223 5.1393 42 1 4.3077 -3.0520 3.5665 43 1 6.3119 -4.4901 3.5052 44 1 7.3277 -3.1054 3.9862 45 1 8.1486 -2.2969 -1.1934 46 1 7.6228 -1.2396 1.8285 47 1 6.2854 -1.4308 0.6850 48 1 2.2337 -2.7253 -0.5515 49 1 1.2350 -4.9724 -0.4254 50 1 -0.1494 -5.5975 1.5127 51 1 -0.5265 -3.9788 3.3296 52 1 0.4814 -1.7354 3.2087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084688358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:26 Heat of formation + Delta-G solvation = 45.917447 kcal Electronic energy + Delta-G solvation = -32607.772009 eV Core-core repulsion = 28766.798322 eV Total energy + Delta-G solvation = -3840.973688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.58688 -39.41314 -37.65635 -35.45527 -35.11664 -32.12047 -31.45370 -30.70017 -30.05055 -29.17945 -27.20165 -26.89536 -26.42169 -23.81634 -22.91747 -22.52833 -21.63514 -21.05224 -20.39686 -19.02148 -17.69967 -16.98390 -16.79858 -15.92738 -15.64168 -15.40359 -15.17245 -14.69838 -14.31679 -14.12474 -13.90989 -13.60466 -13.50474 -13.23908 -13.18003 -12.95283 -12.69514 -12.43098 -12.35702 -12.31563 -12.08801 -12.00608 -11.81214 -11.41751 -11.35939 -11.05953 -11.00423 -10.88801 -10.68208 -10.61004 -10.54938 -10.46823 -10.39093 -10.11867 -9.78461 -9.74946 -9.56929 -8.95261 -8.72250 -8.43929 -8.17724 -7.97540 -6.53022 -5.57894 -3.01894 1.48826 1.59731 3.30831 3.36798 3.48693 3.54856 3.56844 3.97055 4.63362 4.65834 4.76942 4.80335 4.95391 5.05423 5.14232 5.14356 5.27921 5.31119 5.38398 5.48514 5.50138 5.55369 5.62905 5.64803 5.68031 5.68450 5.74758 5.78511 5.82470 5.87391 5.94986 5.98204 6.12035 6.14010 6.19174 6.23564 6.29313 6.37441 6.40048 6.45392 6.46122 6.60004 6.62212 6.65164 6.72753 6.81980 6.84549 7.06282 7.17442 7.61277 7.86831 8.05644 8.43369 8.66252 8.90349 9.42917 10.06212 10.53514 11.48999 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009192 B = 0.005332 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.326364 B = 5249.965919 C = 5758.293642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.147 4.147 4 C -0.056 4.056 5 H 0.084 0.916 6 C 0.544 3.456 7 O -0.510 6.510 8 N -0.629 5.629 9 C 0.094 3.906 10 C -0.110 4.110 11 H 0.084 0.916 12 C -0.116 4.116 13 C 0.148 3.852 14 N -0.584 5.584 15 C -0.244 4.244 16 H 0.062 0.938 17 C 0.009 3.991 18 N -0.906 5.906 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.292 1.292 23 C 0.164 3.836 24 C 0.123 3.877 25 H 0.069 0.931 26 C -0.064 4.064 27 C -0.094 4.094 28 C -0.116 4.116 29 C -0.123 4.123 30 C -0.124 4.124 31 C -0.116 4.116 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.250 0.750 46 H 0.026 0.974 47 H 0.118 0.882 48 H 0.129 0.871 49 H 0.120 0.880 50 H 0.117 0.883 51 H 0.118 0.882 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.484 5.312 8.644 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.078 4.078 5 H 0.103 0.897 6 C 0.332 3.668 7 O -0.385 6.385 8 N -0.365 5.365 9 C -0.030 4.030 10 C -0.129 4.129 11 H 0.102 0.898 12 C -0.155 4.155 13 C 0.021 3.979 14 N -0.307 5.307 15 C -0.373 4.373 16 H 0.080 0.920 17 C -0.189 4.189 18 N -0.552 5.552 19 Si 0.732 3.268 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.219 1.219 23 C 0.038 3.962 24 C 0.019 3.981 25 H 0.087 0.913 26 C -0.065 4.065 27 C -0.112 4.112 28 C -0.134 4.134 29 C -0.141 4.141 30 C -0.142 4.142 31 C -0.134 4.134 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.135 0.865 48 H 0.147 0.853 49 H 0.138 0.862 50 H 0.135 0.865 51 H 0.136 0.864 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.216 5.229 7.689 17.832 hybrid contribution -0.134 -0.454 -0.579 0.748 sum -15.350 4.775 7.110 17.578 Atomic orbital electron populations 1.21835 0.94808 1.02018 1.01353 1.21003 0.95470 0.96008 0.97221 1.21845 1.01870 0.95421 1.01284 1.20356 0.92797 0.94269 1.00369 0.89726 1.19739 0.87574 0.76852 0.82667 1.90774 1.72773 1.47002 1.27903 1.49856 1.08848 1.72271 1.05566 1.23536 0.98759 0.99629 0.81079 1.22846 0.95364 0.97196 0.97468 0.89815 1.21756 1.01595 0.92929 0.99222 1.20634 0.93640 0.96969 0.86664 1.43462 1.85812 1.01663 0.99732 1.19134 1.30344 0.95539 0.92317 0.92049 1.24933 0.97781 0.97385 0.98763 1.69971 1.37657 1.24186 1.23396 0.86231 0.77033 0.80441 0.83141 1.20556 1.21625 1.21904 1.20241 0.94027 0.81971 1.00002 1.22747 0.82513 0.99320 0.93507 0.91342 1.19366 0.97647 0.94489 0.94955 1.21190 0.97826 0.93197 0.98954 1.21155 0.97396 0.96387 0.98442 1.21098 0.99293 0.99254 0.94501 1.21001 1.00625 0.93854 0.98728 1.20932 0.98265 0.96732 0.97437 0.92963 0.92662 0.92299 0.89572 0.92167 0.92462 0.93082 0.90913 0.90747 0.92922 0.92064 0.92757 0.96360 0.93952 0.95629 0.86454 0.85314 0.86178 0.86478 0.86433 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.86 37.15 0.33 -1.27 16 2 C -0.08 -1.08 2.04 -90.62 -0.18 -1.27 16 3 C -0.15 -1.89 8.91 37.16 0.33 -1.56 16 4 C -0.06 -0.84 1.86 -92.92 -0.17 -1.01 16 5 H 0.08 1.09 7.47 -51.93 -0.39 0.70 16 6 C 0.54 10.57 5.82 -10.99 -0.06 10.50 16 7 O -0.51 -12.42 14.57 5.56 0.08 -12.34 16 8 N -0.63 -11.45 3.34 -173.98 -0.58 -12.04 16 9 C 0.09 1.27 7.68 -3.00 -0.02 1.25 16 10 C -0.11 -1.72 4.39 -89.97 -0.40 -2.11 16 11 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 12 C -0.12 -1.99 5.64 -26.92 -0.15 -2.14 16 13 C 0.15 3.12 6.44 -4.17 -0.03 3.10 16 14 N -0.58 -15.11 3.04 -175.37 -0.53 -15.64 16 15 C -0.24 -7.03 9.58 -15.06 -0.14 -7.18 16 16 H 0.06 1.77 7.80 -52.49 -0.41 1.36 16 17 C 0.01 0.27 5.13 -17.43 -0.09 0.18 16 18 N -0.91 -27.69 10.52 55.49 0.58 -27.11 16 19 Si 0.90 23.43 29.56 -169.99 -5.02 18.41 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 22 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 23 C 0.16 4.13 4.58 -5.60 -0.03 4.10 16 24 C 0.12 2.40 4.24 -69.59 -0.29 2.10 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 C -0.06 -0.97 3.26 -104.62 -0.34 -1.31 16 27 C -0.09 -1.57 8.76 -39.58 -0.35 -1.92 16 28 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 29 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 30 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 31 C -0.12 -1.49 9.67 -39.58 -0.38 -1.87 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.70 6.99 -51.93 -0.36 0.34 16 35 H 0.09 1.40 7.10 -51.93 -0.37 1.03 16 36 H 0.06 0.93 7.59 -51.93 -0.39 0.53 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 39 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.06 1.19 7.69 -51.93 -0.40 0.79 16 43 H 0.05 1.14 7.88 -51.93 -0.41 0.73 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 47 H 0.12 3.46 4.57 -51.93 -0.24 3.22 16 48 H 0.13 2.44 7.08 -52.49 -0.37 2.07 16 49 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 50 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 51 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 52 H 0.12 1.23 7.95 -52.49 -0.42 0.81 16 LS Contribution 403.18 15.07 6.08 6.08 Total: -1.00 -33.79 403.18 -11.37 -45.16 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -8.79 Total: 3.93 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.18 Total: -6.45 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.53 Total: -54.79 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.08 Total: -12.34 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.79 -11.37 -45.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084688358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.081 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds