Wall clock time and date at job start Wed Apr 1 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47251 * 2 1 4 4 C 1.53001 * 109.47143 * 119.99766 * 2 1 3 5 5 H 1.09005 * 109.46843 * 294.18071 * 4 2 1 6 6 C 1.50703 * 109.47283 * 174.18310 * 4 2 1 7 7 O 1.21276 * 119.99839 * 322.78914 * 6 4 2 8 8 N 1.34770 * 119.99966 * 142.79330 * 6 4 2 9 9 C 1.47811 * 135.01506 * 4.63921 * 8 6 4 10 10 C 1.54652 * 85.79298 * 153.81132 * 9 8 6 11 11 H 1.09002 * 114.44111 * 139.83915 * 10 9 8 12 12 C 1.53002 * 110.84300 * 270.23404 * 10 9 8 13 13 C 1.52622 * 109.52665 * 143.76968 * 12 10 9 14 14 N 1.46615 * 108.26306 * 301.23527 * 13 12 10 15 15 C 1.36939 * 119.89030 * 237.28883 * 14 13 12 16 16 H 1.07993 * 119.99668 * 24.63616 * 15 14 13 17 17 C 1.38812 * 119.99734 * 204.90637 * 15 14 13 18 18 N 1.31615 * 120.00137 * 7.03588 * 17 15 14 19 19 Si 1.86804 * 119.99573 * 187.03179 * 17 15 14 20 20 H 1.48495 * 109.47291 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46875 * 119.99941 * 19 17 15 22 22 H 1.48500 * 109.46880 * 240.00095 * 19 17 15 23 23 C 1.45678 * 120.21735 * 57.01924 * 14 13 12 24 24 C 1.46816 * 135.01117 * 184.64814 * 8 6 4 25 25 H 1.09005 * 110.91281 * 94.53783 * 24 8 6 26 26 C 1.50697 * 109.47095 * 54.17917 * 4 2 1 27 27 C 1.38233 * 119.99810 * 59.73097 * 26 4 2 28 28 C 1.38238 * 119.99903 * 179.74629 * 27 26 4 29 29 C 1.38232 * 119.99908 * 0.52658 * 28 27 26 30 30 C 1.38234 * 120.00131 * 359.74390 * 29 28 27 31 31 C 1.38237 * 120.00147 * 359.97438 * 30 29 28 32 32 H 1.09003 * 109.47606 * 300.00188 * 1 2 3 33 33 H 1.09000 * 109.47200 * 59.99815 * 1 2 3 34 34 H 1.09000 * 109.47451 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47117 * 239.99837 * 2 1 3 36 36 H 1.09000 * 109.47574 * 186.97567 * 3 2 1 37 37 H 1.09001 * 109.46736 * 306.98140 * 3 2 1 38 38 H 1.09002 * 109.47295 * 66.97894 * 3 2 1 39 39 H 1.09003 * 113.81560 * 39.59826 * 9 8 6 40 40 H 1.08996 * 113.82364 * 268.03269 * 9 8 6 41 41 H 1.09010 * 109.47512 * 263.88414 * 12 10 9 42 42 H 1.09004 * 109.47919 * 23.89527 * 12 10 9 43 43 H 1.08995 * 109.65395 * 181.50885 * 13 12 10 44 44 H 1.09003 * 109.59715 * 60.92582 * 13 12 10 45 45 H 0.97004 * 120.00005 * 180.02562 * 18 17 15 46 46 H 1.09001 * 108.71892 * 82.01619 * 23 14 13 47 47 H 1.08997 * 108.71665 * 200.03920 * 23 14 13 48 48 H 1.07997 * 120.00366 * 359.97438 * 27 26 4 49 49 H 1.08001 * 119.99672 * 180.29440 * 28 27 26 50 50 H 1.08005 * 119.99726 * 179.77178 * 29 28 27 51 51 H 1.08003 * 120.00141 * 180.02562 * 30 29 28 52 52 H 1.07992 * 120.00377 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7642 -0.1506 2.1362 6 6 3.5401 -0.8472 1.1794 7 8 4.0816 -1.0623 0.1158 8 7 4.2798 -0.7208 2.2989 9 6 3.9801 -0.5490 3.7361 10 6 5.3532 -1.2155 3.9853 11 1 5.9300 -0.7705 4.7962 12 6 5.2098 -2.7352 4.0900 13 6 6.4245 -3.4071 3.4558 14 7 6.5064 -2.9808 2.0553 15 6 6.5010 -3.9167 1.0557 16 1 6.0531 -4.8847 1.2248 17 6 7.0762 -3.6230 -0.1731 18 7 7.7470 -2.5023 -0.3346 19 14 6.8980 -4.8187 -1.5973 20 1 6.1034 -5.9945 -1.1600 21 1 6.2052 -4.1454 -2.7250 22 1 8.2433 -5.2663 -2.0390 23 6 6.5877 -1.5646 1.7236 24 6 5.7173 -0.6965 2.5964 25 1 6.0894 0.3274 2.6347 26 6 1.4234 -2.0943 1.3235 27 6 1.6305 -3.0010 0.3009 28 6 1.0693 -4.2624 0.3714 29 6 0.2921 -4.6132 1.4594 30 6 0.0804 -3.7046 2.4794 31 6 0.6464 -2.4452 2.4117 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 3.1228 1.4451 -0.1248 37 1 1.5782 1.9911 -0.8210 38 1 1.7822 1.9191 0.9458 39 1 3.1337 -1.1417 4.0831 40 1 3.9319 0.4923 4.0544 41 1 5.1408 -3.0223 5.1393 42 1 4.3077 -3.0520 3.5665 43 1 6.3119 -4.4901 3.5052 44 1 7.3277 -3.1054 3.9862 45 1 8.1486 -2.2969 -1.1934 46 1 7.6228 -1.2396 1.8285 47 1 6.2854 -1.4308 0.6850 48 1 2.2337 -2.7253 -0.5515 49 1 1.2350 -4.9724 -0.4254 50 1 -0.1494 -5.5975 1.5127 51 1 -0.5265 -3.9788 3.3296 52 1 0.4814 -1.7354 3.2087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084688358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:25 Heat of formation + Delta-G solvation = 26.172617 kcal Electronic energy + Delta-G solvation = -32608.628209 eV Core-core repulsion = 28766.798322 eV Total energy + Delta-G solvation = -3841.829888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.95179 -40.62441 -39.00855 -37.02543 -36.65422 -34.00314 -32.56784 -31.88330 -31.75657 -30.70766 -28.74366 -28.04525 -27.61645 -25.68842 -24.48371 -23.61475 -22.73929 -22.61150 -21.73657 -20.28531 -19.45749 -18.52180 -17.90218 -17.53678 -17.27596 -16.86677 -16.32749 -16.18920 -15.73980 -15.59548 -15.32377 -15.16393 -14.89888 -14.62662 -14.52318 -14.31020 -14.02276 -13.99758 -13.63933 -13.39857 -13.38588 -13.25928 -13.12919 -12.98794 -12.77313 -12.70169 -12.41091 -12.33434 -12.20274 -12.10006 -11.96889 -11.94428 -11.72887 -11.64328 -11.55938 -11.46377 -11.15574 -10.67923 -10.27449 -9.79688 -9.54278 -9.39568 -8.65926 -7.83069 -5.28560 0.41569 0.52086 1.30972 1.36180 1.42896 1.89845 2.04707 2.45538 2.88849 3.32187 3.50595 3.51790 3.66194 3.74237 3.84195 3.98363 4.02776 4.12074 4.17554 4.25237 4.29064 4.36700 4.44618 4.46545 4.57398 4.62810 4.64000 4.66865 4.73007 4.76020 4.77809 4.78519 4.86646 4.94030 4.95484 4.98979 5.05491 5.09323 5.14504 5.16450 5.21949 5.33405 5.35320 5.41284 5.47111 5.55138 5.57302 5.64334 5.70820 5.75834 5.93446 6.13306 6.43601 7.04834 7.20316 7.47382 7.97769 8.35293 9.19753 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009192 B = 0.005332 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.326364 B = 5249.965919 C = 5758.293642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 C -0.141 4.141 4 C -0.043 4.043 5 H 0.120 0.880 6 C 0.533 3.467 7 O -0.579 6.579 8 N -0.638 5.638 9 C 0.109 3.891 10 C -0.100 4.100 11 H 0.123 0.877 12 C -0.103 4.103 13 C 0.138 3.862 14 N -0.601 5.601 15 C -0.246 4.246 16 H 0.057 0.943 17 C -0.047 4.047 18 N -0.933 5.933 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.304 1.304 22 H -0.283 1.283 23 C 0.177 3.823 24 C 0.107 3.893 25 H 0.084 0.916 26 C -0.074 4.074 27 C -0.126 4.126 28 C -0.137 4.137 29 C -0.123 4.123 30 C -0.116 4.116 31 C -0.109 4.109 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.022 0.978 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.038 0.962 43 H 0.048 0.952 44 H 0.027 0.973 45 H 0.241 0.759 46 H -0.013 1.013 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.116 0.884 50 H 0.143 0.857 51 H 0.157 0.843 52 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.082 5.957 13.617 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 C -0.198 4.198 4 C -0.064 4.064 5 H 0.138 0.862 6 C 0.323 3.677 7 O -0.458 6.458 8 N -0.373 5.373 9 C -0.012 4.012 10 C -0.119 4.119 11 H 0.141 0.859 12 C -0.142 4.142 13 C 0.013 3.987 14 N -0.324 5.324 15 C -0.376 4.376 16 H 0.074 0.926 17 C -0.242 4.242 18 N -0.581 5.581 19 Si 0.783 3.217 20 H -0.191 1.191 21 H -0.232 1.232 22 H -0.209 1.209 23 C 0.050 3.950 24 C 0.002 3.998 25 H 0.102 0.898 26 C -0.074 4.074 27 C -0.144 4.144 28 C -0.155 4.155 29 C -0.141 4.141 30 C -0.133 4.133 31 C -0.126 4.126 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.045 0.955 45 H 0.051 0.949 46 H 0.005 0.995 47 H 0.085 0.915 48 H 0.101 0.899 49 H 0.134 0.866 50 H 0.161 0.839 51 H 0.175 0.825 52 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.835 5.864 12.746 23.486 hybrid contribution 1.028 -0.716 -2.105 2.450 sum -17.807 5.148 10.640 21.373 Atomic orbital electron populations 1.21742 0.92106 1.01955 1.03080 1.20975 0.97527 0.95930 0.95330 1.21798 0.99436 0.95201 1.03345 1.20336 0.89101 0.95009 1.01951 0.86192 1.20634 0.89528 0.75488 0.82000 1.90751 1.74421 1.49948 1.30729 1.50065 1.08197 1.71405 1.07597 1.23797 0.98008 1.02282 0.77088 1.22853 0.97266 0.96312 0.95474 0.85868 1.21613 0.97887 0.93703 1.00974 1.20885 0.96179 0.97286 0.84339 1.43681 1.85944 1.01491 1.01295 1.19366 1.28990 0.95876 0.93416 0.92569 1.25614 0.98491 0.98964 1.01089 1.70179 1.39043 1.25735 1.23123 0.85389 0.77188 0.79021 0.80098 1.19148 1.23190 1.20946 1.19804 0.93261 0.82814 0.99074 1.22654 0.82850 0.98996 0.95292 0.89824 1.19426 0.98612 0.94025 0.95376 1.21024 0.99263 0.95132 0.99024 1.21275 0.98617 0.95787 0.99851 1.21431 0.98212 1.00800 0.93661 1.21485 0.99709 0.93050 0.99090 1.21318 0.96653 0.97757 0.96899 0.90269 0.91820 0.93215 0.93978 0.95866 0.91137 0.90262 0.88449 0.86515 0.88305 0.94290 0.93348 0.95470 0.94916 0.99496 0.91466 0.89938 0.86619 0.83882 0.82501 0.82776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.86 71.98 0.64 -2.08 16 2 C -0.08 -2.21 2.04 -10.79 -0.02 -2.23 16 3 C -0.14 -3.58 8.91 71.98 0.64 -2.94 16 4 C -0.04 -1.24 1.86 -12.29 -0.02 -1.26 16 5 H 0.12 2.54 7.47 -2.38 -0.02 2.52 16 6 C 0.53 21.35 5.82 87.66 0.51 21.86 16 7 O -0.58 -31.04 14.57 -3.02 -0.04 -31.09 16 8 N -0.64 -22.48 3.34 -822.75 -2.75 -25.23 16 9 C 0.11 2.38 7.68 86.34 0.66 3.04 16 10 C -0.10 -2.73 4.39 -10.32 -0.05 -2.77 16 11 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 12 C -0.10 -3.19 5.64 30.47 0.17 -3.02 16 13 C 0.14 5.76 6.44 86.23 0.56 6.31 16 14 N -0.60 -32.31 3.04 -708.75 -2.15 -34.47 16 15 C -0.25 -14.94 9.58 84.03 0.80 -14.14 16 16 H 0.06 3.39 7.80 -2.91 -0.02 3.37 16 17 C -0.05 -2.95 5.13 84.86 0.44 -2.51 16 18 N -0.93 -61.40 10.52 21.65 0.23 -61.17 16 19 Si 0.95 51.24 29.56 68.60 2.03 53.27 16 20 H -0.27 -13.57 7.11 99.48 0.71 -12.87 16 21 H -0.30 -16.92 7.11 99.48 0.71 -16.21 16 22 H -0.28 -14.65 7.11 99.48 0.71 -13.95 16 23 C 0.18 9.44 4.58 85.81 0.39 9.83 16 24 C 0.11 4.12 4.24 43.74 0.19 4.30 16 25 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 26 C -0.07 -2.16 3.26 -19.87 -0.06 -2.22 16 27 C -0.13 -4.53 8.76 22.27 0.20 -4.33 16 28 C -0.14 -4.26 10.05 22.27 0.22 -4.03 16 29 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 30 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 31 C -0.11 -2.32 9.67 22.27 0.22 -2.10 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.12 6.99 -2.39 -0.02 1.11 16 35 H 0.04 1.54 7.10 -2.39 -0.02 1.52 16 36 H 0.02 0.74 7.59 -2.39 -0.02 0.72 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.55 8.13 -2.39 -0.02 1.53 16 39 H 0.10 1.73 7.97 -2.39 -0.02 1.71 16 40 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.04 1.39 7.69 -2.38 -0.02 1.37 16 43 H 0.05 2.02 7.88 -2.39 -0.02 2.00 16 44 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.24 15.59 8.31 -92.71 -0.77 14.82 16 46 H -0.01 -0.75 7.99 -2.39 -0.02 -0.77 16 47 H 0.07 4.30 4.57 -2.39 -0.01 4.29 16 48 H 0.08 3.64 7.08 -2.91 -0.02 3.62 16 49 H 0.12 3.47 8.06 -2.91 -0.02 3.44 16 50 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 51 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 52 H 0.15 2.13 7.95 -2.91 -0.02 2.11 16 Total: -1.00 -86.72 403.18 4.12 -82.60 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.88 Total: 19.10 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 5.92 Total: -3.02 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -4.67 Total: -120.86 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.04 Total: -31.09 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.03 Total: 53.27 kcal Total: -86.72 4.12 -82.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084688358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.774 kcal (2) G-P(sol) polarization free energy of solvation -86.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds