Wall clock time and date at job start Wed Apr 1 2020 01:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47449 * 2 1 4 4 C 1.52996 * 109.47091 * 120.00722 * 2 1 3 5 5 H 1.09000 * 109.47103 * 300.71882 * 4 2 1 6 6 C 1.50700 * 109.47548 * 60.72034 * 4 2 1 7 7 O 1.21280 * 120.00067 * 35.91098 * 6 4 2 8 8 N 1.34777 * 120.00031 * 215.91509 * 6 4 2 9 9 C 1.47283 * 136.54265 * 355.00198 * 8 6 4 10 10 C 1.54080 * 87.60743 * 151.36987 * 9 8 6 11 11 H 1.09006 * 115.04566 * 141.62630 * 10 9 8 12 12 C 1.53061 * 111.39624 * 273.10049 * 10 9 8 13 13 C 1.53143 * 109.21771 * 142.39242 * 12 10 9 14 14 N 1.46537 * 108.25249 * 301.59386 * 13 12 10 15 15 C 1.36934 * 119.73572 * 236.44129 * 14 13 12 16 16 H 1.07998 * 120.00281 * 26.98468 * 15 14 13 17 17 C 1.38814 * 119.99890 * 206.98670 * 15 14 13 18 18 N 1.31617 * 119.99964 * 10.35614 * 17 15 14 19 19 Si 1.86804 * 120.00050 * 190.35791 * 17 15 14 20 20 H 1.48500 * 109.46876 * 89.99799 * 19 17 15 21 21 H 1.48500 * 109.47249 * 209.99829 * 19 17 15 22 22 H 1.48491 * 109.47105 * 330.00040 * 19 17 15 23 23 C 1.45697 * 120.52420 * 56.41912 * 14 13 12 24 24 C 1.46467 * 136.54123 * 174.63870 * 8 6 4 25 25 H 1.08995 * 111.44270 * 96.38175 * 24 8 6 26 26 C 1.50699 * 109.47146 * 180.72450 * 4 2 1 27 27 C 1.38233 * 120.00342 * 119.99849 * 26 4 2 28 28 C 1.38238 * 120.00051 * 179.97438 * 27 26 4 29 29 C 1.38237 * 120.00150 * 359.97438 * 28 27 26 30 30 C 1.38233 * 119.99625 * 0.27880 * 29 28 27 31 31 C 1.38234 * 119.99814 * 299.97075 * 26 4 2 32 32 H 1.09003 * 109.47071 * 303.72547 * 1 2 3 33 33 H 1.08997 * 109.47126 * 63.72164 * 1 2 3 34 34 H 1.09000 * 109.47156 * 183.72390 * 1 2 3 35 35 H 1.09006 * 109.47086 * 240.00440 * 2 1 3 36 36 H 1.08997 * 109.47363 * 179.97438 * 3 2 1 37 37 H 1.09003 * 109.47505 * 300.00794 * 3 2 1 38 38 H 1.09006 * 109.46617 * 60.00153 * 3 2 1 39 39 H 1.09004 * 113.53129 * 266.05339 * 9 8 6 40 40 H 1.09003 * 113.53259 * 36.69107 * 9 8 6 41 41 H 1.09002 * 109.51469 * 262.31722 * 12 10 9 42 42 H 1.09003 * 109.51043 * 22.47180 * 12 10 9 43 43 H 1.09000 * 109.70409 * 61.28305 * 13 12 10 44 44 H 1.09003 * 109.70860 * 181.85520 * 13 12 10 45 45 H 0.97000 * 120.00028 * 180.02562 * 18 17 15 46 46 H 1.09000 * 108.78715 * 80.89563 * 23 14 13 47 47 H 1.09003 * 108.79059 * 199.11363 * 23 14 13 48 48 H 1.07995 * 119.99876 * 359.97294 * 27 26 4 49 49 H 1.07999 * 119.99688 * 179.97438 * 28 27 26 50 50 H 1.07996 * 120.00202 * 180.02562 * 29 28 27 51 51 H 1.08009 * 119.99942 * 179.72710 * 30 29 28 52 52 H 1.08009 * 120.00014 * 0.02562 * 31 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6661 -0.2152 2.1391 6 6 1.5523 -2.1473 1.2401 7 8 1.4646 -2.7516 0.1923 8 7 1.2136 -2.7509 2.3966 9 6 1.2586 -2.4166 3.8303 10 6 0.0429 -3.3444 4.0186 11 1 0.0536 -3.9394 4.9319 12 6 -1.2718 -2.5970 3.7825 13 6 -2.2585 -3.5258 3.0691 14 7 -1.6518 -3.9577 1.8071 15 6 -2.3080 -3.7336 0.6263 16 1 -2.9992 -2.9082 0.5408 17 6 -2.0848 -4.5674 -0.4608 18 7 -1.4074 -5.6851 -0.3048 19 14 -2.7459 -4.1032 -2.1452 20 1 -1.7308 -3.2978 -2.8705 21 1 -3.0433 -5.3364 -2.9173 22 1 -3.9889 -3.3066 -1.9867 23 6 -0.3558 -4.6234 1.7988 24 6 0.6286 -4.0333 2.7949 25 1 1.3984 -4.7535 3.0719 26 6 3.5469 -0.7059 1.2581 27 6 4.2257 -0.1047 2.3015 28 6 5.6080 -0.0910 2.3100 29 6 6.3114 -0.6788 1.2754 30 6 5.6325 -1.2754 0.2294 31 6 4.2503 -1.2933 0.2233 32 1 -0.3633 0.5706 0.8547 33 1 -0.3633 0.4550 -0.9214 34 1 -0.3633 -1.0255 0.0667 35 1 1.8933 -0.5138 -0.8901 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6767 1.9562 0.8901 39 1 2.1589 -2.7717 4.3319 40 1 1.0429 -1.3689 4.0398 41 1 -1.6910 -2.2864 4.7396 42 1 -1.0855 -1.7192 3.1637 43 1 -2.4635 -4.3945 3.6948 44 1 -3.1867 -2.9909 2.8675 45 1 -1.2511 -6.2675 -1.0646 46 1 -0.4998 -5.6752 2.0459 47 1 0.0674 -4.5552 0.7966 48 1 3.6761 0.3542 3.1100 49 1 6.1383 0.3790 3.1250 50 1 7.3913 -0.6685 1.2822 51 1 6.1821 -1.7308 -0.5813 52 1 3.7199 -1.7630 -0.5920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084688359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:29 Heat of formation + Delta-G solvation = 47.529220 kcal Electronic energy + Delta-G solvation = -32358.860000 eV Core-core repulsion = 28517.956204 eV Total energy + Delta-G solvation = -3840.903796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.69994 -39.56399 -37.74838 -35.42239 -35.14672 -32.13662 -31.52100 -30.88509 -30.07808 -29.19287 -27.13159 -26.81945 -26.42588 -23.81282 -22.96087 -22.68124 -21.71643 -21.07052 -20.39643 -19.07382 -17.72021 -17.06981 -16.85898 -15.91240 -15.75459 -15.40185 -15.27499 -14.77136 -14.21540 -14.15791 -13.99524 -13.74429 -13.48550 -13.38007 -13.22110 -12.90314 -12.63934 -12.50483 -12.36177 -12.22881 -12.17623 -11.93752 -11.82798 -11.42654 -11.40074 -11.10110 -11.03799 -10.78865 -10.67163 -10.64266 -10.52080 -10.41755 -10.40171 -10.15516 -9.82870 -9.75956 -9.50689 -9.05330 -8.91937 -8.54554 -8.25836 -8.02562 -6.53778 -5.62443 -3.07695 1.31072 1.40027 3.26794 3.35963 3.48361 3.53607 3.55717 3.79286 4.61026 4.66228 4.73026 4.77370 4.90665 4.96252 5.02899 5.14333 5.17655 5.26230 5.42950 5.45410 5.49096 5.53307 5.56022 5.60220 5.64223 5.68002 5.78012 5.79554 5.90837 5.91944 5.93877 6.05009 6.06671 6.15258 6.16833 6.18651 6.32229 6.38609 6.42001 6.43412 6.49509 6.54044 6.55941 6.62786 6.70133 6.78781 6.82048 6.98933 7.02994 7.55127 7.83047 7.98862 8.42986 8.61793 8.86091 9.39090 10.02414 10.50881 11.44939 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.004527 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.203710 B = 6183.551749 C = 7061.973622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 C -0.143 4.143 4 C -0.056 4.056 5 H 0.087 0.913 6 C 0.555 3.445 7 O -0.515 6.515 8 N -0.631 5.631 9 C 0.096 3.904 10 C -0.113 4.113 11 H 0.089 0.911 12 C -0.114 4.114 13 C 0.148 3.852 14 N -0.584 5.584 15 C -0.252 4.252 16 H 0.062 0.938 17 C 0.013 3.987 18 N -0.904 5.904 19 Si 0.899 3.101 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.170 3.830 24 C 0.117 3.883 25 H 0.070 0.930 26 C -0.063 4.063 27 C -0.114 4.114 28 C -0.123 4.123 29 C -0.126 4.126 30 C -0.119 4.119 31 C -0.103 4.103 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.018 0.982 44 H 0.055 0.945 45 H 0.252 0.748 46 H 0.025 0.975 47 H 0.106 0.894 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.967 12.333 9.120 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.093 4.093 3 C -0.200 4.200 4 C -0.078 4.078 5 H 0.105 0.895 6 C 0.344 3.656 7 O -0.389 6.389 8 N -0.367 5.367 9 C -0.028 4.028 10 C -0.132 4.132 11 H 0.107 0.893 12 C -0.154 4.154 13 C 0.021 3.979 14 N -0.306 5.306 15 C -0.382 4.382 16 H 0.079 0.921 17 C -0.186 4.186 18 N -0.548 5.548 19 Si 0.729 3.271 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.043 3.957 24 C 0.013 3.987 25 H 0.088 0.912 26 C -0.064 4.064 27 C -0.132 4.132 28 C -0.141 4.141 29 C -0.144 4.144 30 C -0.137 4.137 31 C -0.121 4.121 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.124 0.876 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.011 11.971 8.175 18.825 hybrid contribution -0.070 0.194 -0.715 0.744 sum 11.941 12.165 7.460 18.607 Atomic orbital electron populations 1.21891 0.94049 1.03913 1.01052 1.20974 0.96549 0.95225 0.96536 1.21839 1.00899 0.95711 1.01565 1.20344 0.91966 0.94430 1.01051 0.89484 1.19544 0.76823 0.87215 0.82066 1.90754 1.52435 1.65816 1.29909 1.49476 1.62727 1.19995 1.04535 1.23297 0.98039 0.99895 0.81598 1.22683 0.94712 0.97697 0.98158 0.89305 1.21828 0.94947 0.99134 0.99472 1.20722 0.93956 0.94845 0.88337 1.43428 1.16434 1.69606 1.01133 1.19074 1.22162 1.08005 0.88929 0.92073 1.24976 0.99751 0.95113 0.98728 1.69980 1.43996 1.11308 1.29527 0.86344 0.78493 0.77290 0.84956 1.21300 1.21836 1.20661 1.20354 0.83761 0.92727 0.98826 1.22797 0.95224 0.86413 0.94299 0.91169 1.19489 0.93720 0.98181 0.95008 1.21012 0.94327 0.99949 0.97913 1.21055 0.94047 1.00282 0.98708 1.21120 0.99641 0.98920 0.94688 1.21153 0.94292 0.99622 0.98634 1.21234 0.94136 0.98075 0.98655 0.93311 0.92710 0.90480 0.89965 0.92687 0.92553 0.92924 0.90725 0.91354 0.92758 0.92124 0.96371 0.92682 0.93814 0.95675 0.87629 0.86266 0.86268 0.86387 0.86154 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.01 37.16 0.33 -2.19 16 2 C -0.07 -1.12 2.02 -90.62 -0.18 -1.30 16 3 C -0.14 -1.71 8.94 37.16 0.33 -1.38 16 4 C -0.06 -0.85 1.88 -92.93 -0.17 -1.03 16 5 H 0.09 1.19 7.35 -51.93 -0.38 0.80 16 6 C 0.56 10.77 5.52 -10.99 -0.06 10.71 16 7 O -0.51 -12.41 14.57 5.56 0.08 -12.33 16 8 N -0.63 -11.45 3.36 -187.34 -0.63 -12.08 16 9 C 0.10 1.30 7.62 -11.54 -0.09 1.21 16 10 C -0.11 -1.73 4.52 -90.45 -0.41 -2.14 16 11 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 12 C -0.11 -1.87 5.71 -26.63 -0.15 -2.03 16 13 C 0.15 3.04 6.46 -3.95 -0.03 3.01 16 14 N -0.58 -14.73 3.03 -174.38 -0.53 -15.25 16 15 C -0.25 -7.10 9.52 -15.06 -0.14 -7.24 16 16 H 0.06 1.71 7.83 -52.49 -0.41 1.29 16 17 C 0.01 0.38 5.03 -17.43 -0.09 0.29 16 18 N -0.90 -27.38 10.81 55.49 0.60 -26.78 16 19 Si 0.90 23.11 29.57 -169.99 -5.03 18.08 16 20 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 23 C 0.17 4.22 4.59 -5.00 -0.02 4.20 16 24 C 0.12 2.25 4.12 -77.39 -0.32 1.93 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 26 C -0.06 -0.87 3.47 -104.63 -0.36 -1.24 16 27 C -0.11 -1.31 9.67 -39.58 -0.38 -1.70 16 28 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 29 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 30 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 31 C -0.10 -1.49 8.80 -39.58 -0.35 -1.84 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.64 6.81 -51.93 -0.35 1.28 16 35 H 0.08 1.39 7.11 -51.93 -0.37 1.02 16 36 H 0.05 0.65 7.19 -51.93 -0.37 0.27 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.81 7.73 -51.93 -0.40 0.41 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 1.12 7.88 -51.93 -0.41 0.71 16 45 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 47 H 0.11 3.09 4.96 -51.93 -0.26 2.84 16 48 H 0.12 1.15 7.95 -52.49 -0.42 0.73 16 49 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 50 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 51 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 52 H 0.13 2.10 7.06 -52.48 -0.37 1.73 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -33.13 402.99 -11.48 -44.62 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.77 Total: 3.65 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.29 Total: -5.98 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.56 Total: -54.11 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.03 Total: 18.08 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.13 -11.48 -44.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084688359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.147 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds