Wall clock time and date at job start Wed Apr 1 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47449 * 2 1 4 4 C 1.52996 * 109.47091 * 120.00722 * 2 1 3 5 5 H 1.09000 * 109.47103 * 300.71882 * 4 2 1 6 6 C 1.50700 * 109.47548 * 60.72034 * 4 2 1 7 7 O 1.21280 * 120.00067 * 35.91098 * 6 4 2 8 8 N 1.34777 * 120.00031 * 215.91509 * 6 4 2 9 9 C 1.47283 * 136.54265 * 355.00198 * 8 6 4 10 10 C 1.54080 * 87.60743 * 151.36987 * 9 8 6 11 11 H 1.09006 * 115.04566 * 141.62630 * 10 9 8 12 12 C 1.53061 * 111.39624 * 273.10049 * 10 9 8 13 13 C 1.53143 * 109.21771 * 142.39242 * 12 10 9 14 14 N 1.46537 * 108.25249 * 301.59386 * 13 12 10 15 15 C 1.36934 * 119.73572 * 236.44129 * 14 13 12 16 16 H 1.07998 * 120.00281 * 26.98468 * 15 14 13 17 17 C 1.38814 * 119.99890 * 206.98670 * 15 14 13 18 18 N 1.31617 * 119.99964 * 10.35614 * 17 15 14 19 19 Si 1.86804 * 120.00050 * 190.35791 * 17 15 14 20 20 H 1.48500 * 109.46876 * 89.99799 * 19 17 15 21 21 H 1.48500 * 109.47249 * 209.99829 * 19 17 15 22 22 H 1.48491 * 109.47105 * 330.00040 * 19 17 15 23 23 C 1.45697 * 120.52420 * 56.41912 * 14 13 12 24 24 C 1.46467 * 136.54123 * 174.63870 * 8 6 4 25 25 H 1.08995 * 111.44270 * 96.38175 * 24 8 6 26 26 C 1.50699 * 109.47146 * 180.72450 * 4 2 1 27 27 C 1.38233 * 120.00342 * 119.99849 * 26 4 2 28 28 C 1.38238 * 120.00051 * 179.97438 * 27 26 4 29 29 C 1.38237 * 120.00150 * 359.97438 * 28 27 26 30 30 C 1.38233 * 119.99625 * 0.27880 * 29 28 27 31 31 C 1.38234 * 119.99814 * 299.97075 * 26 4 2 32 32 H 1.09003 * 109.47071 * 303.72547 * 1 2 3 33 33 H 1.08997 * 109.47126 * 63.72164 * 1 2 3 34 34 H 1.09000 * 109.47156 * 183.72390 * 1 2 3 35 35 H 1.09006 * 109.47086 * 240.00440 * 2 1 3 36 36 H 1.08997 * 109.47363 * 179.97438 * 3 2 1 37 37 H 1.09003 * 109.47505 * 300.00794 * 3 2 1 38 38 H 1.09006 * 109.46617 * 60.00153 * 3 2 1 39 39 H 1.09004 * 113.53129 * 266.05339 * 9 8 6 40 40 H 1.09003 * 113.53259 * 36.69107 * 9 8 6 41 41 H 1.09002 * 109.51469 * 262.31722 * 12 10 9 42 42 H 1.09003 * 109.51043 * 22.47180 * 12 10 9 43 43 H 1.09000 * 109.70409 * 61.28305 * 13 12 10 44 44 H 1.09003 * 109.70860 * 181.85520 * 13 12 10 45 45 H 0.97000 * 120.00028 * 180.02562 * 18 17 15 46 46 H 1.09000 * 108.78715 * 80.89563 * 23 14 13 47 47 H 1.09003 * 108.79059 * 199.11363 * 23 14 13 48 48 H 1.07995 * 119.99876 * 359.97294 * 27 26 4 49 49 H 1.07999 * 119.99688 * 179.97438 * 28 27 26 50 50 H 1.07996 * 120.00202 * 180.02562 * 29 28 27 51 51 H 1.08009 * 119.99942 * 179.72710 * 30 29 28 52 52 H 1.08009 * 120.00014 * 0.02562 * 31 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6661 -0.2152 2.1391 6 6 1.5523 -2.1473 1.2401 7 8 1.4646 -2.7516 0.1923 8 7 1.2136 -2.7509 2.3966 9 6 1.2586 -2.4166 3.8303 10 6 0.0429 -3.3444 4.0186 11 1 0.0536 -3.9394 4.9319 12 6 -1.2718 -2.5970 3.7825 13 6 -2.2585 -3.5258 3.0691 14 7 -1.6518 -3.9577 1.8071 15 6 -2.3080 -3.7336 0.6263 16 1 -2.9992 -2.9082 0.5408 17 6 -2.0848 -4.5674 -0.4608 18 7 -1.4074 -5.6851 -0.3048 19 14 -2.7459 -4.1032 -2.1452 20 1 -1.7308 -3.2978 -2.8705 21 1 -3.0433 -5.3364 -2.9173 22 1 -3.9889 -3.3066 -1.9867 23 6 -0.3558 -4.6234 1.7988 24 6 0.6286 -4.0333 2.7949 25 1 1.3984 -4.7535 3.0719 26 6 3.5469 -0.7059 1.2581 27 6 4.2257 -0.1047 2.3015 28 6 5.6080 -0.0910 2.3100 29 6 6.3114 -0.6788 1.2754 30 6 5.6325 -1.2754 0.2294 31 6 4.2503 -1.2933 0.2233 32 1 -0.3633 0.5706 0.8547 33 1 -0.3633 0.4550 -0.9214 34 1 -0.3633 -1.0255 0.0667 35 1 1.8933 -0.5138 -0.8901 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6767 1.9562 0.8901 39 1 2.1589 -2.7717 4.3319 40 1 1.0429 -1.3689 4.0398 41 1 -1.6910 -2.2864 4.7396 42 1 -1.0855 -1.7192 3.1637 43 1 -2.4635 -4.3945 3.6948 44 1 -3.1867 -2.9909 2.8675 45 1 -1.2511 -6.2675 -1.0646 46 1 -0.4998 -5.6752 2.0459 47 1 0.0674 -4.5552 0.7966 48 1 3.6761 0.3542 3.1100 49 1 6.1383 0.3790 3.1250 50 1 7.3913 -0.6685 1.2822 51 1 6.1821 -1.7308 -0.5813 52 1 3.7199 -1.7630 -0.5920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084688359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:28 Heat of formation + Delta-G solvation = 28.305344 kcal Electronic energy + Delta-G solvation = -32359.693610 eV Core-core repulsion = 28517.956204 eV Total energy + Delta-G solvation = -3841.737406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.05645 -40.68661 -39.04498 -37.05677 -36.65710 -33.98276 -32.60520 -31.87114 -31.77094 -30.68867 -28.71479 -28.07054 -27.64855 -25.65605 -24.49234 -23.61413 -22.74062 -22.57505 -21.80005 -20.34969 -19.44017 -18.52952 -17.92530 -17.50687 -17.26507 -16.94199 -16.40778 -16.06312 -15.75627 -15.62364 -15.30921 -15.14616 -15.01204 -14.63997 -14.47094 -14.30538 -14.16214 -13.77156 -13.68915 -13.48318 -13.36298 -13.29799 -13.12092 -13.04044 -12.75259 -12.72807 -12.41198 -12.34256 -12.20295 -12.10134 -11.96636 -11.93450 -11.75674 -11.62998 -11.57746 -11.46382 -11.03664 -10.67431 -10.35856 -9.81544 -9.56595 -9.46797 -8.64134 -7.84163 -5.30808 0.39297 0.50396 1.32685 1.39472 1.43459 1.86760 2.03699 2.46567 2.86779 3.30947 3.45992 3.54481 3.65576 3.73609 3.79650 3.93540 4.04678 4.11611 4.16984 4.25363 4.28726 4.36670 4.42091 4.48451 4.56323 4.60076 4.60942 4.66838 4.71745 4.73490 4.75547 4.77380 4.85080 4.92977 4.95963 4.98176 5.07727 5.10591 5.15053 5.16579 5.21380 5.33382 5.34967 5.41423 5.44393 5.57150 5.57367 5.62959 5.69582 5.74132 5.86279 6.11554 6.41163 7.05201 7.20074 7.42668 7.96892 8.36130 9.19351 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.004527 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.203710 B = 6183.551749 C = 7061.973622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C -0.130 4.130 4 C -0.041 4.041 5 H 0.113 0.887 6 C 0.545 3.455 7 O -0.582 6.582 8 N -0.641 5.641 9 C 0.109 3.891 10 C -0.101 4.101 11 H 0.127 0.873 12 C -0.102 4.102 13 C 0.139 3.861 14 N -0.599 5.599 15 C -0.249 4.249 16 H 0.061 0.939 17 C -0.044 4.044 18 N -0.934 5.934 19 Si 0.951 3.049 20 H -0.301 1.301 21 H -0.291 1.291 22 H -0.260 1.260 23 C 0.185 3.815 24 C 0.102 3.898 25 H 0.080 0.920 26 C -0.077 4.077 27 C -0.108 4.108 28 C -0.116 4.116 29 C -0.122 4.122 30 C -0.131 4.131 31 C -0.131 4.131 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.046 0.954 43 H 0.024 0.976 44 H 0.052 0.948 45 H 0.242 0.758 46 H -0.014 1.014 47 H 0.052 0.948 48 H 0.150 0.850 49 H 0.156 0.844 50 H 0.147 0.853 51 H 0.126 0.874 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.593 16.109 13.589 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C -0.187 4.187 4 C -0.062 4.062 5 H 0.131 0.869 6 C 0.335 3.665 7 O -0.461 6.461 8 N -0.375 5.375 9 C -0.012 4.012 10 C -0.120 4.120 11 H 0.144 0.856 12 C -0.141 4.141 13 C 0.014 3.986 14 N -0.322 5.322 15 C -0.380 4.380 16 H 0.078 0.922 17 C -0.239 4.239 18 N -0.581 5.581 19 Si 0.780 3.220 20 H -0.230 1.230 21 H -0.217 1.217 22 H -0.184 1.184 23 C 0.058 3.942 24 C -0.003 4.003 25 H 0.098 0.902 26 C -0.077 4.077 27 C -0.126 4.126 28 C -0.133 4.133 29 C -0.139 4.139 30 C -0.149 4.149 31 C -0.149 4.149 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.003 0.997 47 H 0.070 0.930 48 H 0.167 0.833 49 H 0.174 0.826 50 H 0.165 0.835 51 H 0.144 0.856 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.616 15.785 12.722 24.422 hybrid contribution -0.572 -1.027 -2.088 2.396 sum 13.045 14.758 10.634 22.384 Atomic orbital electron populations 1.21796 0.95379 1.00600 1.02319 1.20927 0.95280 0.97350 0.95625 1.21732 1.01049 0.92996 1.02961 1.20251 0.93209 0.91175 1.01613 0.86855 1.20441 0.75756 0.88775 0.81484 1.90726 1.55150 1.67690 1.32574 1.49693 1.61778 1.19496 1.06565 1.23499 0.98252 1.01476 0.77992 1.22710 0.94847 0.97549 0.96894 0.85562 1.21710 0.94381 0.97315 1.00720 1.20977 0.95133 0.95876 0.86632 1.43645 1.16886 1.69562 1.02136 1.19359 1.21204 1.07066 0.90369 0.92151 1.25652 1.00963 0.95485 1.01845 1.70171 1.45957 1.12457 1.29544 0.85498 0.78210 0.76913 0.81345 1.22956 1.21729 1.18449 1.19898 0.84935 0.91451 0.97894 1.22770 0.94768 0.87807 0.94921 0.90207 1.19402 0.92600 0.99731 0.95993 1.21305 0.95067 0.98890 0.97349 1.21499 0.93729 0.99000 0.99093 1.21489 1.01173 0.97513 0.93770 1.21309 0.93388 1.00249 0.99920 1.21095 0.95320 0.99808 0.98692 0.90804 0.92425 0.96052 0.93580 0.92276 0.92039 0.90591 0.87515 0.88198 0.88042 0.93522 0.95815 0.92960 0.94882 0.99663 0.92984 0.83280 0.82642 0.83535 0.85576 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.01 71.98 0.65 -4.27 16 2 C -0.07 -2.25 2.02 -10.80 -0.02 -2.28 16 3 C -0.13 -2.87 8.94 71.98 0.64 -2.23 16 4 C -0.04 -1.22 1.88 -12.29 -0.02 -1.24 16 5 H 0.11 2.67 7.35 -2.39 -0.02 2.65 16 6 C 0.54 21.99 5.52 87.66 0.48 22.47 16 7 O -0.58 -31.04 14.57 -3.03 -0.04 -31.08 16 8 N -0.64 -22.85 3.36 -865.01 -2.91 -25.76 16 9 C 0.11 2.44 7.62 81.10 0.62 3.06 16 10 C -0.10 -2.71 4.52 -10.69 -0.05 -2.76 16 11 H 0.13 2.55 8.14 -2.38 -0.02 2.54 16 12 C -0.10 -3.00 5.71 30.66 0.17 -2.82 16 13 C 0.14 5.59 6.46 86.42 0.56 6.15 16 14 N -0.60 -31.50 3.03 -705.61 -2.14 -33.64 16 15 C -0.25 -14.78 9.52 84.03 0.80 -13.98 16 16 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 17 C -0.04 -2.74 5.03 84.86 0.43 -2.32 16 18 N -0.93 -61.13 10.81 21.65 0.23 -60.90 16 19 Si 0.95 50.48 29.57 68.60 2.03 52.51 16 20 H -0.30 -16.60 7.11 99.48 0.71 -15.89 16 21 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 22 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 23 C 0.18 9.81 4.59 86.19 0.40 10.20 16 24 C 0.10 3.95 4.12 38.88 0.16 4.11 16 25 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 26 C -0.08 -2.01 3.47 -19.87 -0.07 -2.08 16 27 C -0.11 -2.01 9.67 22.27 0.22 -1.80 16 28 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 29 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 30 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 31 C -0.13 -3.95 8.80 22.27 0.20 -3.75 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.02 0.94 6.81 -2.39 -0.02 0.93 16 35 H 0.05 1.74 7.11 -2.38 -0.02 1.72 16 36 H 0.06 1.27 7.19 -2.39 -0.02 1.25 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.10 1.69 7.73 -2.39 -0.02 1.67 16 41 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 1.52 7.70 -2.39 -0.02 1.50 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 2.09 7.88 -2.39 -0.02 2.07 16 45 H 0.24 15.60 8.31 -92.71 -0.77 14.83 16 46 H -0.01 -0.85 7.98 -2.39 -0.02 -0.86 16 47 H 0.05 3.33 4.96 -2.39 -0.01 3.32 16 48 H 0.15 1.88 7.95 -2.91 -0.02 1.85 16 49 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 50 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 51 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 52 H 0.09 3.34 7.06 -2.91 -0.02 3.32 16 Total: -1.00 -85.00 402.99 3.89 -81.12 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.88 Total: 17.77 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 5.83 Total: -0.01 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -4.81 Total: -120.30 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.04 Total: -31.08 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.03 Total: 52.51 kcal Total: -85.00 3.89 -81.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084688359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.421 kcal (2) G-P(sol) polarization free energy of solvation -85.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds