Wall clock time and date at job start Wed Apr 1 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46987 * 2 1 4 4 H 1.08994 * 109.47650 * 305.70837 * 3 2 1 5 5 C 1.53006 * 109.47160 * 185.70656 * 3 2 1 6 6 C 1.50696 * 109.46972 * 64.99986 * 5 3 2 7 7 C 1.38234 * 120.00398 * 269.72798 * 6 5 3 8 8 C 1.38227 * 120.00210 * 179.76734 * 7 6 5 9 9 C 1.38236 * 120.00191 * 0.48615 * 8 7 6 10 10 C 1.38237 * 119.99798 * 359.78504 * 9 8 7 11 11 C 1.38234 * 119.99891 * 90.00318 * 6 5 3 12 12 C 1.50698 * 109.47240 * 65.70766 * 3 2 1 13 13 O 1.21286 * 120.00141 * 32.28223 * 12 3 2 14 14 N 1.34778 * 120.00290 * 212.27863 * 12 3 2 15 15 C 1.47290 * 136.54101 * 4.71080 * 14 12 3 16 16 C 1.54088 * 87.60452 * 151.34502 * 15 14 12 17 17 H 1.08997 * 115.04124 * 141.63180 * 16 15 14 18 18 C 1.53063 * 111.39050 * 273.96940 * 16 15 14 19 19 C 1.52005 * 109.68692 * 142.51591 * 18 16 15 20 20 N 1.46538 * 108.11119 * 301.56811 * 19 18 16 21 21 C 1.36936 * 119.73845 * 236.29623 * 20 19 18 22 22 H 1.07994 * 120.00170 * 148.03397 * 21 20 19 23 23 C 1.38819 * 119.99702 * 328.02980 * 21 20 19 24 24 N 1.31621 * 119.99583 * 164.18531 * 23 21 20 25 25 Si 1.86797 * 120.00159 * 344.19113 * 23 21 20 26 26 H 1.48494 * 109.47528 * 86.40308 * 25 23 21 27 27 H 1.48505 * 109.46630 * 206.40347 * 25 23 21 28 28 H 1.48503 * 109.46882 * 326.39863 * 25 23 21 29 29 C 1.45702 * 120.52385 * 56.31565 * 20 19 18 30 30 C 1.46465 * 136.54634 * 184.32688 * 14 12 3 31 31 H 1.08998 * 111.43892 * 96.40555 * 30 14 12 32 32 H 1.09003 * 109.47292 * 183.82399 * 1 2 3 33 33 H 1.09001 * 109.47050 * 303.82197 * 1 2 3 34 34 H 1.09003 * 109.47695 * 63.82191 * 1 2 3 35 35 H 1.08996 * 109.47072 * 240.00289 * 2 1 3 36 36 H 1.08997 * 109.47200 * 119.99774 * 2 1 3 37 37 H 1.09002 * 109.46965 * 185.00208 * 5 3 2 38 38 H 1.09003 * 109.46816 * 305.00143 * 5 3 2 39 39 H 1.08007 * 119.99334 * 359.97438 * 7 6 5 40 40 H 1.08003 * 119.99823 * 180.25219 * 8 7 6 41 41 H 1.07999 * 120.00051 * 179.77093 * 9 8 7 42 42 H 1.07999 * 120.00356 * 179.97438 * 10 9 8 43 43 H 1.08003 * 120.00187 * 359.97438 * 11 6 5 44 44 H 1.09000 * 113.52741 * 266.02510 * 15 14 12 45 45 H 1.09000 * 113.52623 * 36.66363 * 15 14 12 46 46 H 1.08994 * 109.51901 * 262.32827 * 18 16 15 47 47 H 1.09001 * 109.51660 * 22.48578 * 18 16 15 48 48 H 1.08998 * 109.88440 * 181.85681 * 19 18 16 49 49 H 1.09008 * 109.71187 * 61.17472 * 19 18 16 50 50 H 0.96993 * 119.99997 * 180.02562 * 24 23 21 51 51 H 1.09003 * 108.78592 * 199.10032 * 29 20 19 52 52 H 1.08998 * 108.78926 * 80.88192 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5956 1.9850 -0.8344 5 6 3.5632 1.4449 -0.1434 6 6 3.9417 0.8883 -1.4917 7 6 4.1665 -0.4674 -1.6415 8 6 4.5089 -0.9786 -2.8793 9 6 4.6364 -0.1329 -3.9652 10 6 4.4170 1.2236 -3.8143 11 6 4.0695 1.7341 -2.5775 12 6 1.6563 2.1109 1.2950 13 8 1.5901 1.4608 2.3167 14 7 1.3868 3.4313 1.3179 15 6 1.2730 4.5166 0.3286 16 6 0.2757 5.1972 1.2858 17 1 0.3591 6.2824 1.3437 18 6 -1.1489 4.6823 1.0662 19 6 -1.8648 4.5708 2.4025 20 7 -1.0954 3.6624 3.2570 21 6 -1.7017 2.5580 3.7936 22 1 -1.1307 1.6570 3.9625 23 6 -3.0503 2.5966 4.1206 24 7 -3.7071 1.4768 4.3372 25 14 -3.9327 4.2377 4.2529 26 1 -4.4226 4.6459 2.9119 27 1 -5.0838 4.1071 5.1819 28 1 -2.9930 5.2646 4.7704 29 6 0.3094 3.9251 3.5406 30 6 1.0681 4.4339 2.3369 31 1 1.9566 4.9846 2.6456 32 1 -0.3634 -1.0254 0.0685 33 1 -0.3633 0.5720 0.8538 34 1 -0.3634 0.4534 -0.9222 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.9349 2.4657 -0.0544 38 1 4.0029 0.8284 0.6406 39 1 4.0714 -1.1276 -0.7920 40 1 4.6806 -2.0384 -2.9971 41 1 4.9075 -0.5318 -4.9315 42 1 4.5169 1.8845 -4.6626 43 1 3.8978 2.7939 -2.4597 44 1 2.1968 5.0785 0.1911 45 1 0.8255 4.2010 -0.6139 46 1 -1.6924 5.3767 0.4256 47 1 -1.1126 3.7012 0.5927 48 1 -2.8686 4.1732 2.2533 49 1 -1.9247 5.5534 2.8707 50 1 -4.6495 1.5037 4.5653 51 1 0.7763 3.0026 3.8857 52 1 0.3741 4.6676 4.3359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084695157.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:10 Heat of formation + Delta-G solvation = 26.944697 kcal Electronic energy + Delta-G solvation = -31398.903314 eV Core-core repulsion = 27557.106907 eV Total energy + Delta-G solvation = -3841.796408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.10617 -40.49712 -39.43315 -37.33143 -36.28424 -33.96468 -33.04065 -32.70772 -31.72717 -31.11146 -29.52249 -28.67997 -25.77716 -25.38423 -24.91923 -23.64704 -22.94517 -22.75012 -21.96620 -20.73032 -19.31561 -18.73662 -17.95237 -17.57145 -17.27472 -17.05682 -16.66428 -16.06795 -16.03971 -15.57508 -15.46265 -15.34026 -15.15140 -14.65641 -14.55484 -14.37833 -14.27640 -14.07996 -14.02608 -13.75443 -13.61966 -13.48169 -13.42120 -12.86285 -12.80387 -12.62854 -12.57908 -12.27935 -12.22310 -12.11490 -11.95602 -11.89110 -11.86402 -11.66142 -11.58337 -11.37384 -11.16601 -10.70802 -10.42311 -9.74185 -9.56636 -9.52047 -8.82687 -8.16129 -5.54342 0.47178 0.56210 1.26260 1.39199 1.50375 1.79877 1.96719 2.40262 2.93160 3.07938 3.30616 3.41031 3.44139 3.65764 3.83582 3.98175 4.01038 4.07652 4.13462 4.19952 4.24191 4.33303 4.36136 4.37137 4.40387 4.49297 4.53213 4.58612 4.59670 4.63837 4.69513 4.71689 4.76132 4.84791 4.87599 4.88882 4.95992 4.97137 5.02615 5.07129 5.18871 5.20299 5.23568 5.24487 5.28527 5.30135 5.56697 5.63527 5.69155 5.76925 5.92310 6.14010 6.18060 6.95204 6.99155 7.35588 7.66029 7.99057 9.05379 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018020 B = 0.003154 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.428350 B = 8876.507371 C = 9551.475635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.078 4.078 4 H 0.103 0.897 5 C -0.057 4.057 6 C -0.086 4.086 7 C -0.130 4.130 8 C -0.129 4.129 9 C -0.130 4.130 10 C -0.124 4.124 11 C -0.120 4.120 12 C 0.539 3.461 13 O -0.587 6.587 14 N -0.643 5.643 15 C 0.109 3.891 16 C -0.102 4.102 17 H 0.142 0.858 18 C -0.108 4.108 19 C 0.114 3.886 20 N -0.609 5.609 21 C -0.241 4.241 22 H 0.018 0.982 23 C -0.044 4.044 24 N -0.969 5.969 25 Si 0.970 3.030 26 H -0.261 1.261 27 H -0.314 1.314 28 H -0.258 1.258 29 C 0.143 3.857 30 C 0.113 3.887 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.014 0.986 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.118 0.882 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.126 0.874 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.038 0.962 48 H 0.048 0.952 49 H 0.045 0.955 50 H 0.261 0.739 51 H 0.031 0.969 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.336 8.302 -21.434 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 C -0.099 4.099 4 H 0.121 0.879 5 C -0.095 4.095 6 C -0.086 4.086 7 C -0.148 4.148 8 C -0.146 4.146 9 C -0.148 4.148 10 C -0.141 4.141 11 C -0.138 4.138 12 C 0.330 3.670 13 O -0.466 6.466 14 N -0.378 5.378 15 C -0.012 4.012 16 C -0.121 4.121 17 H 0.160 0.840 18 C -0.147 4.147 19 C -0.010 4.010 20 N -0.333 5.333 21 C -0.371 4.371 22 H 0.036 0.964 23 C -0.237 4.237 24 N -0.615 5.615 25 Si 0.798 3.202 26 H -0.187 1.187 27 H -0.243 1.243 28 H -0.183 1.183 29 C 0.017 3.983 30 C 0.009 3.991 31 H 0.134 0.866 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.144 0.856 45 H 0.107 0.893 46 H 0.116 0.884 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.070 0.930 51 H 0.049 0.951 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 18.258 7.666 -20.859 28.761 hybrid contribution -0.996 -0.543 1.192 1.646 sum 17.261 7.122 -19.667 27.120 Atomic orbital electron populations 1.21704 0.96730 1.01421 1.00588 1.21436 0.94943 0.95033 1.02450 1.21192 0.97572 0.96918 0.94240 0.87937 1.20376 0.91846 1.02494 0.94754 1.19743 0.99974 0.94007 0.94874 1.21248 1.00243 0.95065 0.98242 1.21388 0.99704 1.00783 0.92769 1.21474 0.99966 0.93987 0.99404 1.21459 0.99039 0.95873 0.97774 1.21295 0.99694 1.00463 0.92320 1.20619 0.75433 0.79998 0.90968 1.90716 1.54194 1.63874 1.37846 1.49698 1.68834 1.05854 1.13442 1.23560 0.99707 0.84640 0.93258 1.22752 0.93281 1.01139 0.94931 0.84049 1.21507 0.95661 1.00610 0.96907 1.21234 0.94970 0.93001 0.91826 1.43821 1.07347 1.26752 1.55419 1.18649 0.93483 0.89787 1.35219 0.96386 1.26161 0.97739 1.00743 0.99079 1.69993 1.09442 1.28484 1.53619 0.85627 0.76909 0.80253 0.77437 1.18664 1.24272 1.18282 1.20343 0.84085 0.98267 0.95593 1.22491 0.97987 0.87586 0.91070 0.86634 0.92629 0.96715 0.91436 0.88737 0.93264 0.89211 0.91786 0.86394 0.84821 0.84265 0.83892 0.84266 0.85609 0.89271 0.88436 0.94267 0.93397 0.93679 0.93022 0.95094 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.79 71.98 0.70 -4.42 16 2 C -0.10 -3.00 4.89 30.59 0.15 -2.85 16 3 C -0.08 -2.07 2.10 -11.54 -0.02 -2.09 16 4 H 0.10 2.32 7.73 -2.39 -0.02 2.30 16 5 C -0.06 -1.21 4.82 29.85 0.14 -1.06 16 6 C -0.09 -1.59 4.71 -19.87 -0.09 -1.68 16 7 C -0.13 -2.45 7.88 22.27 0.18 -2.27 16 8 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 9 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 10 C -0.12 -1.64 10.05 22.27 0.22 -1.41 16 11 C -0.12 -1.79 9.70 22.27 0.22 -1.58 16 12 C 0.54 19.39 6.10 87.66 0.53 19.92 16 13 O -0.59 -28.55 15.03 -3.05 -0.05 -28.60 16 14 N -0.64 -19.24 3.34 -866.67 -2.89 -22.13 16 15 C 0.11 1.91 7.58 81.09 0.61 2.53 16 16 C -0.10 -2.26 4.58 -10.68 -0.05 -2.31 16 17 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 18 C -0.11 -3.27 5.61 30.29 0.17 -3.10 16 19 C 0.11 4.74 4.10 86.04 0.35 5.09 16 20 N -0.61 -30.70 2.74 -709.41 -1.94 -32.64 16 21 C -0.24 -15.27 9.94 84.04 0.84 -14.43 16 22 H 0.02 1.36 8.03 -2.91 -0.02 1.34 16 23 C -0.04 -2.76 5.27 84.86 0.45 -2.31 16 24 N -0.97 -65.70 13.97 21.65 0.30 -65.39 16 25 Si 0.97 48.66 24.30 68.60 1.67 50.33 16 26 H -0.26 -11.84 6.40 99.48 0.64 -11.20 16 27 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 28 H -0.26 -12.23 6.87 99.48 0.68 -11.54 16 29 C 0.14 6.21 6.12 85.91 0.53 6.73 16 30 C 0.11 3.37 4.03 38.60 0.16 3.53 16 31 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.01 0.64 7.10 -2.39 -0.02 0.62 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 2.30 5.89 -2.39 -0.01 2.29 16 36 H 0.05 1.70 7.65 -2.39 -0.02 1.68 16 37 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 38 H 0.06 1.56 8.08 -2.39 -0.02 1.54 16 39 H 0.12 2.25 8.00 -2.91 -0.02 2.23 16 40 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.13 1.18 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.37 7.90 -2.39 -0.02 1.35 16 46 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.04 1.41 7.68 -2.39 -0.02 1.39 16 48 H 0.05 2.26 4.29 -2.39 -0.01 2.25 16 49 H 0.05 1.71 7.23 -2.38 -0.02 1.70 16 50 H 0.26 16.63 8.31 -92.71 -0.77 15.86 16 51 H 0.03 1.61 6.46 -2.39 -0.02 1.60 16 52 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -88.81 398.78 3.41 -85.39 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.79 Total: 18.18 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.53 Total: -5.13 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -4.53 Total: -120.17 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 1.67 Total: 50.33 kcal Total: -88.81 3.41 -85.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084695157.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.338 kcal (2) G-P(sol) polarization free energy of solvation -88.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds