Wall clock time and date at job start Wed Apr 1 2020 01:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47080 * 2 1 4 4 C 1.52996 * 109.47450 * 239.99869 * 2 1 3 5 5 C 1.50702 * 109.46981 * 59.99856 * 4 2 1 6 6 C 1.38237 * 119.99975 * 269.72793 * 5 4 2 7 7 C 1.38234 * 119.99809 * 179.80584 * 6 5 4 8 8 C 1.38232 * 120.00128 * 0.42779 * 7 6 5 9 9 C 1.38237 * 120.00279 * 359.80374 * 8 7 6 10 10 C 1.38233 * 119.99461 * 0.02562 * 9 8 7 11 11 C 1.50702 * 109.47146 * 119.99826 * 2 1 3 12 12 O 1.21277 * 119.99914 * 120.00393 * 11 2 1 13 13 N 1.34781 * 119.99712 * 299.99962 * 11 2 1 14 14 C 1.47283 * 136.54912 * 0.02562 * 13 11 2 15 15 C 1.54082 * 87.60699 * 151.38190 * 14 13 11 16 16 H 1.09004 * 115.04128 * 141.62765 * 15 14 13 17 17 C 1.53056 * 111.39478 * 273.97274 * 15 14 13 18 18 C 1.52702 * 109.28113 * 142.28859 * 17 15 14 19 19 N 1.46540 * 108.49111 * 301.79519 * 18 17 15 20 20 C 1.36933 * 119.73766 * 236.39743 * 19 18 17 21 21 H 1.07997 * 120.00172 * 151.44697 * 20 19 18 22 22 C 1.38810 * 120.00181 * 331.44861 * 20 19 18 23 23 N 1.31622 * 119.99838 * 335.26107 * 22 20 19 24 24 Si 1.86793 * 120.00354 * 155.26330 * 22 20 19 25 25 H 1.48502 * 109.47581 * 180.02562 * 24 22 20 26 26 H 1.48498 * 109.47222 * 59.99932 * 24 22 20 27 27 H 1.48499 * 109.47256 * 299.99823 * 24 22 20 28 28 C 1.45700 * 120.52441 * 56.12639 * 19 18 17 29 29 C 1.46466 * 136.53622 * 179.97438 * 13 11 2 30 30 H 1.09005 * 111.43922 * 97.09783 * 29 13 11 31 31 H 1.09001 * 109.47519 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47512 * 59.99697 * 1 2 3 33 33 H 1.09004 * 109.47428 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47538 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47563 * 300.00116 * 3 2 1 36 36 H 1.09000 * 109.47433 * 59.99967 * 3 2 1 37 37 H 1.08997 * 109.47276 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.47307 * 300.00181 * 4 2 1 39 39 H 1.07998 * 120.00105 * 0.02562 * 6 5 4 40 40 H 1.07997 * 120.00035 * 180.20961 * 7 6 5 41 41 H 1.08003 * 120.00242 * 179.78883 * 8 7 6 42 42 H 1.07999 * 120.00301 * 179.97438 * 9 8 7 43 43 H 1.08000 * 120.00164 * 179.97438 * 10 9 8 44 44 H 1.09002 * 113.52971 * 266.06992 * 14 13 11 45 45 H 1.09002 * 113.52347 * 36.63326 * 14 13 11 46 46 H 1.09003 * 109.51718 * 262.32539 * 17 15 14 47 47 H 1.09004 * 109.51337 * 22.48653 * 17 15 14 48 48 H 1.08997 * 109.62342 * 182.01188 * 18 17 15 49 49 H 1.09003 * 109.55693 * 61.54054 * 18 17 15 50 50 H 0.96999 * 120.00339 * 354.29890 * 23 22 20 51 51 H 1.09000 * 108.79295 * 81.16032 * 28 19 18 52 52 H 1.08996 * 108.78697 * 199.37695 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 6 0.3325 -0.3801 -3.0473 7 6 -0.1302 0.2742 -4.1737 8 6 0.6164 1.2918 -4.7375 9 6 1.8239 1.6578 -4.1727 10 6 2.2849 1.0059 -3.0443 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1192 13 7 1.7066 -0.2498 2.4546 14 6 0.9168 0.8664 3.0018 15 6 0.6397 -0.0180 4.2327 16 1 0.6377 0.5078 5.1876 17 6 -0.5719 -0.9255 4.0068 18 6 -0.3090 -2.2864 4.6474 19 7 0.9052 -2.8528 4.0537 20 6 0.8587 -4.0845 3.4571 21 1 1.5392 -4.3208 2.6525 22 6 -0.0631 -5.0293 3.8865 23 7 -0.5400 -4.9740 5.1120 24 14 -0.6269 -6.3793 2.7251 25 1 -1.6064 -7.2529 3.4197 26 1 0.5440 -7.1878 2.3003 27 1 -1.2670 -5.7702 1.5316 28 6 2.1600 -2.1132 4.0878 29 6 1.9777 -0.6339 3.8417 30 1 2.8053 -0.0605 4.2595 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.1300 -0.7208 -1.2494 38 1 1.6767 -1.7489 -1.2492 39 1 -0.2493 -1.1773 -2.6088 40 1 -1.0733 -0.0119 -4.6152 41 1 0.2566 1.8007 -5.6195 42 1 2.4074 2.4525 -4.6135 43 1 3.2284 1.2915 -2.6032 44 1 1.5120 1.7514 3.2268 45 1 0.0245 1.0948 2.4189 46 1 -1.4548 -0.4735 4.4590 47 1 -0.7356 -1.0548 2.9369 48 1 -1.1537 -2.9490 4.4591 49 1 -0.1699 -2.1634 5.7215 50 1 -0.1872 -4.3251 5.7409 51 1 2.6232 -2.2524 5.0647 52 1 2.8262 -2.5167 3.3253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084761548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:59 Heat of formation + Delta-G solvation = 47.896847 kcal Electronic energy + Delta-G solvation = -31721.556953 eV Core-core repulsion = 27880.669099 eV Total energy + Delta-G solvation = -3840.887854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.98550 -39.74721 -38.17567 -35.62564 -35.50169 -31.96207 -31.26595 -31.08881 -30.94838 -28.62801 -27.39739 -26.89682 -26.69404 -23.93112 -23.33928 -22.59872 -22.50859 -21.22980 -20.68537 -19.09340 -17.76901 -17.15539 -16.73083 -16.24217 -15.88455 -15.65989 -15.34896 -15.10855 -14.35778 -14.22203 -14.11995 -13.72958 -13.59123 -13.53217 -13.43373 -13.22502 -12.95629 -12.82516 -12.54935 -12.48082 -12.20110 -12.03980 -11.84766 -11.79228 -11.66617 -11.23263 -11.08820 -11.06148 -10.85433 -10.83877 -10.68453 -10.64439 -10.43452 -10.05511 -9.92304 -9.75360 -9.26068 -9.02080 -8.98692 -8.75731 -8.35697 -8.20221 -6.76577 -5.97247 -3.12524 1.22746 1.27245 3.07507 3.12611 3.56819 3.58281 3.66780 3.77052 4.42956 4.55432 4.68684 4.71630 4.73889 4.83458 4.91339 4.92751 5.03721 5.09564 5.15900 5.26541 5.33616 5.37300 5.40564 5.41931 5.52277 5.57717 5.61460 5.63721 5.71140 5.77154 5.79141 5.83645 5.89629 5.94459 5.96127 6.00154 6.09618 6.13772 6.23627 6.28198 6.34810 6.38337 6.39874 6.50105 6.55559 6.58788 6.76419 6.88761 6.91908 7.09823 7.24983 8.17762 8.21028 8.61317 8.69470 9.24872 9.96756 10.35632 11.31181 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.003658 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.274843 B = 7651.665317 C = 8931.533043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.060 4.060 5 C -0.069 4.069 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.129 4.129 9 C -0.122 4.122 10 C -0.116 4.116 11 C 0.555 3.445 12 O -0.529 6.529 13 N -0.626 5.626 14 C 0.092 3.908 15 C -0.111 4.111 16 H 0.092 0.908 17 C -0.117 4.117 18 C 0.150 3.850 19 N -0.588 5.588 20 C -0.337 4.337 21 H 0.055 0.945 22 C -0.026 4.026 23 N -0.921 5.921 24 Si 1.061 2.939 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.295 1.295 28 C 0.146 3.854 29 C 0.126 3.874 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.016 0.984 50 H 0.267 0.733 51 H 0.014 0.986 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 18.757 -12.733 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.098 4.098 5 C -0.069 4.069 6 C -0.131 4.131 7 C -0.138 4.138 8 C -0.147 4.147 9 C -0.140 4.140 10 C -0.134 4.134 11 C 0.344 3.656 12 O -0.404 6.404 13 N -0.362 5.362 14 C -0.031 4.031 15 C -0.131 4.131 16 H 0.110 0.890 17 C -0.156 4.156 18 C 0.024 3.976 19 N -0.311 5.311 20 C -0.466 4.466 21 H 0.073 0.927 22 C -0.227 4.227 23 N -0.562 5.562 24 Si 0.891 3.109 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.223 1.223 28 C 0.019 3.981 29 C 0.022 3.978 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.102 0.898 49 H 0.034 0.966 50 H 0.078 0.922 51 H 0.032 0.968 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.799 16.807 -13.198 21.384 hybrid contribution 1.192 1.505 0.116 1.923 sum 1.991 18.311 -13.082 22.592 Atomic orbital electron populations 1.22010 0.92623 1.03118 1.02461 1.20592 0.97447 0.96178 0.92644 1.21936 1.01143 0.94099 1.02622 1.20472 1.01281 0.98953 0.89102 1.19889 0.94652 0.96038 0.96283 1.21166 0.95911 1.00078 0.95967 1.21146 0.99855 0.96492 0.96288 1.21107 0.95358 0.98047 1.00167 1.21110 0.96499 1.00037 0.96362 1.21081 0.99917 0.96244 0.96179 1.19801 0.79648 0.84017 0.82140 1.90709 1.38272 1.25934 1.85513 1.49322 1.52599 1.29709 1.04543 1.23443 0.95040 0.90861 0.93799 1.22804 0.96441 0.96698 0.97122 0.89016 1.21811 0.94316 0.97656 1.01814 1.20756 0.91536 0.91555 0.93769 1.43515 1.02661 1.17042 1.67863 1.20025 1.22750 0.90258 1.13591 0.92701 1.25742 0.99217 0.99408 0.98352 1.70786 1.46346 1.36357 1.02685 0.83572 0.76351 0.75907 0.75034 1.21170 1.22023 1.22279 1.20218 0.90385 0.88651 0.98870 1.22313 0.96616 0.99086 0.79824 0.90833 0.91891 0.91469 0.91759 0.92463 0.91257 0.92216 0.90338 0.89880 0.85883 0.86217 0.86444 0.86351 0.86202 0.90509 0.90441 0.92622 0.91982 0.89766 0.96565 0.92172 0.96807 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 7.78 37.15 0.29 -1.57 16 2 C -0.07 -0.89 0.58 -155.67 -0.09 -0.98 16 3 C -0.14 -1.53 7.76 37.16 0.29 -1.24 16 4 C -0.06 -0.82 3.75 -27.88 -0.10 -0.92 16 5 C -0.07 -0.79 4.00 -104.62 -0.42 -1.20 16 6 C -0.11 -1.25 7.90 -39.58 -0.31 -1.56 16 7 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 8 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 9 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 10 C -0.12 -1.18 7.89 -39.58 -0.31 -1.49 16 11 C 0.55 9.93 6.67 -10.98 -0.07 9.86 16 12 O -0.53 -11.85 15.23 5.56 0.08 -11.76 16 13 N -0.63 -10.29 3.22 -187.75 -0.60 -10.89 16 14 C 0.09 1.14 5.70 -11.54 -0.07 1.08 16 15 C -0.11 -1.65 4.57 -90.33 -0.41 -2.07 16 16 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.12 -2.08 5.68 -26.85 -0.15 -2.23 16 18 C 0.15 3.46 4.61 -4.17 -0.02 3.44 16 19 N -0.59 -15.04 2.87 -175.19 -0.50 -15.54 16 20 C -0.34 -9.84 9.41 -15.06 -0.14 -9.99 16 21 H 0.06 1.71 7.89 -52.49 -0.41 1.29 16 22 C -0.03 -0.77 4.65 -17.43 -0.08 -0.85 16 23 N -0.92 -27.91 12.35 55.49 0.69 -27.22 16 24 Si 1.06 26.42 29.98 -169.99 -5.10 21.32 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 28 C 0.15 3.28 6.15 -5.45 -0.03 3.24 16 29 C 0.13 2.18 4.03 -77.72 -0.31 1.87 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.77 5.23 -51.93 -0.27 0.50 16 32 H 0.07 0.76 6.19 -51.93 -0.32 0.44 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.68 6.18 -51.93 -0.32 0.36 16 36 H 0.06 0.60 6.41 -51.93 -0.33 0.27 16 37 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 38 H 0.08 1.28 8.04 -51.93 -0.42 0.87 16 39 H 0.12 1.34 8.04 -52.49 -0.42 0.92 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 1.09 8.03 -52.49 -0.42 0.67 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.89 5.65 -51.93 -0.29 0.59 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.20 7.68 -51.93 -0.40 0.80 16 48 H 0.08 2.21 6.11 -51.93 -0.32 1.90 16 49 H 0.02 0.38 7.95 -51.93 -0.41 -0.04 16 50 H 0.27 8.13 6.76 -40.82 -0.28 7.85 16 51 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.07 1.78 6.46 -51.93 -0.34 1.45 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -33.86 392.05 -11.07 -44.93 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.40 Total: 2.50 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -3.15 Total: -9.24 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.42 Total: -53.66 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 26.42 SS G_CDS: -5.10 Total: 21.32 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.86 -11.07 -44.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084761548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.829 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds