Wall clock time and date at job start Wed Apr 1 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47080 * 2 1 4 4 C 1.52996 * 109.47450 * 239.99869 * 2 1 3 5 5 C 1.50702 * 109.46981 * 59.99856 * 4 2 1 6 6 C 1.38237 * 119.99975 * 269.72793 * 5 4 2 7 7 C 1.38234 * 119.99809 * 179.80584 * 6 5 4 8 8 C 1.38232 * 120.00128 * 0.42779 * 7 6 5 9 9 C 1.38237 * 120.00279 * 359.80374 * 8 7 6 10 10 C 1.38233 * 119.99461 * 0.02562 * 9 8 7 11 11 C 1.50702 * 109.47146 * 119.99826 * 2 1 3 12 12 O 1.21277 * 119.99914 * 120.00393 * 11 2 1 13 13 N 1.34781 * 119.99712 * 299.99962 * 11 2 1 14 14 C 1.47283 * 136.54912 * 0.02562 * 13 11 2 15 15 C 1.54082 * 87.60699 * 151.38190 * 14 13 11 16 16 H 1.09004 * 115.04128 * 141.62765 * 15 14 13 17 17 C 1.53056 * 111.39478 * 273.97274 * 15 14 13 18 18 C 1.52702 * 109.28113 * 142.28859 * 17 15 14 19 19 N 1.46540 * 108.49111 * 301.79519 * 18 17 15 20 20 C 1.36933 * 119.73766 * 236.39743 * 19 18 17 21 21 H 1.07997 * 120.00172 * 151.44697 * 20 19 18 22 22 C 1.38810 * 120.00181 * 331.44861 * 20 19 18 23 23 N 1.31622 * 119.99838 * 335.26107 * 22 20 19 24 24 Si 1.86793 * 120.00354 * 155.26330 * 22 20 19 25 25 H 1.48502 * 109.47581 * 180.02562 * 24 22 20 26 26 H 1.48498 * 109.47222 * 59.99932 * 24 22 20 27 27 H 1.48499 * 109.47256 * 299.99823 * 24 22 20 28 28 C 1.45700 * 120.52441 * 56.12639 * 19 18 17 29 29 C 1.46466 * 136.53622 * 179.97438 * 13 11 2 30 30 H 1.09005 * 111.43922 * 97.09783 * 29 13 11 31 31 H 1.09001 * 109.47519 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47512 * 59.99697 * 1 2 3 33 33 H 1.09004 * 109.47428 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47538 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47563 * 300.00116 * 3 2 1 36 36 H 1.09000 * 109.47433 * 59.99967 * 3 2 1 37 37 H 1.08997 * 109.47276 * 179.97438 * 4 2 1 38 38 H 1.08997 * 109.47307 * 300.00181 * 4 2 1 39 39 H 1.07998 * 120.00105 * 0.02562 * 6 5 4 40 40 H 1.07997 * 120.00035 * 180.20961 * 7 6 5 41 41 H 1.08003 * 120.00242 * 179.78883 * 8 7 6 42 42 H 1.07999 * 120.00301 * 179.97438 * 9 8 7 43 43 H 1.08000 * 120.00164 * 179.97438 * 10 9 8 44 44 H 1.09002 * 113.52971 * 266.06992 * 14 13 11 45 45 H 1.09002 * 113.52347 * 36.63326 * 14 13 11 46 46 H 1.09003 * 109.51718 * 262.32539 * 17 15 14 47 47 H 1.09004 * 109.51337 * 22.48653 * 17 15 14 48 48 H 1.08997 * 109.62342 * 182.01188 * 18 17 15 49 49 H 1.09003 * 109.55693 * 61.54054 * 18 17 15 50 50 H 0.96999 * 120.00339 * 354.29890 * 23 22 20 51 51 H 1.09000 * 108.79295 * 81.16032 * 28 19 18 52 52 H 1.08996 * 108.78697 * 199.37695 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 6 0.3325 -0.3801 -3.0473 7 6 -0.1302 0.2742 -4.1737 8 6 0.6164 1.2918 -4.7375 9 6 1.8239 1.6578 -4.1727 10 6 2.2849 1.0059 -3.0443 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6964 1.1192 13 7 1.7066 -0.2498 2.4546 14 6 0.9168 0.8664 3.0018 15 6 0.6397 -0.0180 4.2327 16 1 0.6377 0.5078 5.1876 17 6 -0.5719 -0.9255 4.0068 18 6 -0.3090 -2.2864 4.6474 19 7 0.9052 -2.8528 4.0537 20 6 0.8587 -4.0845 3.4571 21 1 1.5392 -4.3208 2.6525 22 6 -0.0631 -5.0293 3.8865 23 7 -0.5400 -4.9740 5.1120 24 14 -0.6269 -6.3793 2.7251 25 1 -1.6064 -7.2529 3.4197 26 1 0.5440 -7.1878 2.3003 27 1 -1.2670 -5.7702 1.5316 28 6 2.1600 -2.1132 4.0878 29 6 1.9777 -0.6339 3.8417 30 1 2.8053 -0.0605 4.2595 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.1300 -0.7208 -1.2494 38 1 1.6767 -1.7489 -1.2492 39 1 -0.2493 -1.1773 -2.6088 40 1 -1.0733 -0.0119 -4.6152 41 1 0.2566 1.8007 -5.6195 42 1 2.4074 2.4525 -4.6135 43 1 3.2284 1.2915 -2.6032 44 1 1.5120 1.7514 3.2268 45 1 0.0245 1.0948 2.4189 46 1 -1.4548 -0.4735 4.4590 47 1 -0.7356 -1.0548 2.9369 48 1 -1.1537 -2.9490 4.4591 49 1 -0.1699 -2.1634 5.7215 50 1 -0.1872 -4.3251 5.7409 51 1 2.6232 -2.2524 5.0647 52 1 2.8262 -2.5167 3.3253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084761548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:58 Heat of formation + Delta-G solvation = 28.352990 kcal Electronic energy + Delta-G solvation = -31722.404438 eV Core-core repulsion = 27880.669099 eV Total energy + Delta-G solvation = -3841.735340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.28011 -40.71319 -39.41799 -37.44500 -36.73554 -33.71417 -32.70056 -32.35455 -31.83283 -30.07973 -28.54152 -28.33868 -27.72083 -25.74920 -24.86315 -23.72456 -23.33799 -22.61781 -21.93406 -20.35229 -19.70365 -18.69203 -17.63359 -17.42228 -17.20715 -17.03541 -16.27366 -16.14435 -15.92084 -15.89362 -15.47682 -15.39346 -15.02269 -14.81187 -14.64574 -14.33370 -14.21531 -13.87735 -13.74782 -13.64276 -13.52369 -13.31469 -13.09995 -12.97023 -12.80095 -12.77067 -12.64591 -12.43136 -12.13219 -11.99263 -11.96441 -11.87833 -11.82818 -11.79618 -11.76574 -11.44858 -11.06380 -10.52005 -10.41330 -9.76918 -9.59907 -9.56498 -8.91551 -8.28471 -5.42751 0.45168 0.52404 1.48411 1.54771 1.73312 1.75760 1.89520 2.57864 2.89263 3.13513 3.30281 3.37616 3.54109 3.71721 3.75851 3.83612 3.98125 4.06485 4.09629 4.14628 4.21478 4.27060 4.33385 4.35984 4.44112 4.47741 4.48219 4.57214 4.65122 4.66998 4.71075 4.74973 4.79995 4.83515 4.86640 4.94950 4.96763 4.98776 5.01386 5.09924 5.13727 5.17946 5.18897 5.25349 5.27380 5.31199 5.56565 5.61101 5.65720 5.76478 5.81955 6.14613 6.38354 6.90446 7.08573 7.25996 7.79618 8.14678 8.95136 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.003658 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.274843 B = 7651.665317 C = 8931.533043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.057 4.057 3 C -0.131 4.131 4 C -0.054 4.054 5 C -0.080 4.080 6 C -0.130 4.130 7 C -0.124 4.124 8 C -0.127 4.127 9 C -0.120 4.120 10 C -0.121 4.121 11 C 0.541 3.459 12 O -0.592 6.592 13 N -0.633 5.633 14 C 0.106 3.894 15 C -0.104 4.104 16 H 0.133 0.867 17 C -0.106 4.106 18 C 0.153 3.847 19 N -0.603 5.603 20 C -0.347 4.347 21 H 0.021 0.979 22 C -0.068 4.068 23 N -0.935 5.935 24 Si 1.106 2.894 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.147 3.853 29 C 0.115 3.885 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.111 0.889 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.041 0.959 48 H 0.044 0.956 49 H 0.014 0.986 50 H 0.256 0.744 51 H 0.008 0.992 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 23.259 -13.858 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.060 4.060 3 C -0.188 4.188 4 C -0.092 4.092 5 C -0.080 4.080 6 C -0.148 4.148 7 C -0.142 4.142 8 C -0.144 4.144 9 C -0.138 4.138 10 C -0.138 4.138 11 C 0.332 3.668 12 O -0.473 6.473 13 N -0.367 5.367 14 C -0.015 4.015 15 C -0.123 4.123 16 H 0.151 0.849 17 C -0.145 4.145 18 C 0.027 3.973 19 N -0.328 5.328 20 C -0.478 4.478 21 H 0.039 0.961 22 C -0.264 4.264 23 N -0.577 5.577 24 Si 0.931 3.069 25 H -0.204 1.204 26 H -0.211 1.211 27 H -0.212 1.212 28 C 0.021 3.979 29 C 0.010 3.990 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.147 0.853 44 H 0.141 0.859 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.032 0.968 50 H 0.066 0.934 51 H 0.026 0.974 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.209 21.378 -14.299 25.720 hybrid contribution 1.555 0.048 0.482 1.629 sum 1.347 21.426 -13.817 25.530 Atomic orbital electron populations 1.21941 0.91961 1.01439 1.03926 1.20579 0.97704 0.97554 0.90185 1.21895 1.01096 0.91637 1.04198 1.20315 1.00400 0.97529 0.90951 1.19689 0.95388 0.97029 0.95857 1.21181 0.96068 1.00483 0.97042 1.21376 1.00679 0.96478 0.95618 1.21468 0.95009 0.97375 1.00596 1.21436 0.96651 1.00144 0.95556 1.21210 1.00069 0.95866 0.96698 1.20694 0.78862 0.83494 0.83725 1.90678 1.41249 1.28781 1.86566 1.49514 1.52489 1.30929 1.03784 1.23664 0.95763 0.90430 0.91606 1.22796 0.92739 0.96368 1.00372 0.84933 1.21641 0.97514 0.95223 1.00111 1.20683 0.88963 0.93723 0.93888 1.43675 1.04643 1.16540 1.67903 1.20005 1.22558 0.92380 1.12812 0.96125 1.26946 0.99222 1.01295 0.98980 1.70890 1.46971 1.36732 1.03116 0.82976 0.76362 0.73932 0.73657 1.20400 1.21126 1.21196 1.20213 0.88445 0.92213 0.97074 1.22457 0.99854 0.95356 0.81331 0.87380 0.90682 0.89516 0.95044 0.92562 0.89670 0.90496 0.91562 0.93532 0.87044 0.84574 0.83811 0.83731 0.85297 0.85858 0.88710 0.89158 0.93982 0.93704 0.96761 0.93366 0.97403 0.95315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 7.78 71.98 0.56 -2.85 16 2 C -0.06 -1.55 0.58 -52.93 -0.03 -1.58 16 3 C -0.13 -2.49 7.76 71.98 0.56 -1.93 16 4 C -0.05 -1.56 3.75 29.85 0.11 -1.45 16 5 C -0.08 -1.81 4.00 -19.86 -0.08 -1.89 16 6 C -0.13 -2.85 7.90 22.27 0.18 -2.67 16 7 C -0.12 -2.16 10.05 22.27 0.22 -1.93 16 8 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 9 C -0.12 -1.79 10.05 22.27 0.22 -1.56 16 10 C -0.12 -2.22 7.89 22.27 0.18 -2.05 16 11 C 0.54 19.99 6.67 87.66 0.58 20.57 16 12 O -0.59 -28.83 15.23 -3.02 -0.05 -28.88 16 13 N -0.63 -20.07 3.22 -866.30 -2.79 -22.86 16 14 C 0.11 2.14 5.70 81.09 0.46 2.60 16 15 C -0.10 -2.70 4.57 -10.61 -0.05 -2.74 16 16 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 17 C -0.11 -3.60 5.68 30.51 0.17 -3.43 16 18 C 0.15 7.20 4.61 86.27 0.40 7.60 16 19 N -0.60 -32.48 2.87 -708.19 -2.03 -34.51 16 20 C -0.35 -21.64 9.41 84.03 0.79 -20.85 16 21 H 0.02 1.41 7.89 -2.91 -0.02 1.39 16 22 C -0.07 -4.12 4.65 84.86 0.39 -3.73 16 23 N -0.94 -58.76 12.35 21.65 0.27 -58.50 16 24 Si 1.11 55.50 29.98 68.60 2.06 57.56 16 25 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 28 C 0.15 6.93 6.15 85.90 0.53 7.46 16 29 C 0.11 3.82 4.03 38.67 0.16 3.97 16 30 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 31 H 0.07 1.67 5.23 -2.39 -0.01 1.65 16 32 H 0.09 1.84 6.19 -2.39 -0.01 1.82 16 33 H 0.03 0.97 8.14 -2.38 -0.02 0.96 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.38 6.18 -2.39 -0.01 1.37 16 36 H 0.08 1.20 6.41 -2.39 -0.02 1.18 16 37 H 0.07 2.00 8.04 -2.39 -0.02 1.99 16 38 H 0.05 1.63 8.04 -2.39 -0.02 1.61 16 39 H 0.11 2.61 8.04 -2.91 -0.02 2.58 16 40 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 41 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.13 2.09 8.03 -2.91 -0.02 2.07 16 44 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.09 1.66 5.65 -2.39 -0.01 1.65 16 46 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.04 1.59 7.68 -2.38 -0.02 1.58 16 48 H 0.04 2.45 6.11 -2.39 -0.01 2.43 16 49 H 0.01 0.67 7.95 -2.39 -0.02 0.66 16 50 H 0.26 16.25 6.76 -92.71 -0.63 15.63 16 51 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 52 H 0.03 1.57 6.46 -2.39 -0.02 1.55 16 Total: -1.00 -82.99 392.05 4.08 -78.91 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.04 Total: 16.38 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 5.58 Total: -8.10 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -4.55 Total: -115.87 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.05 Total: -28.88 kcal Atomic # 14 Polarization: 55.50 SS G_CDS: 2.06 Total: 57.56 kcal Total: -82.99 4.08 -78.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084761548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.260 kcal (2) G-P(sol) polarization free energy of solvation -82.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds