Wall clock time and date at job start Wed Apr 1 2020 01:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46657 * 2 1 4 4 C 1.52998 * 109.46926 * 119.99389 * 2 1 3 5 5 C 1.50700 * 109.47256 * 300.00611 * 4 2 1 6 6 O 1.21271 * 120.00333 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99733 * 180.02562 * 5 4 2 8 8 C 1.47293 * 136.54363 * 359.97438 * 7 5 4 9 9 C 1.52791 * 87.31841 * 150.72212 * 8 7 5 10 10 H 1.08999 * 114.70343 * 142.41066 * 9 8 7 11 11 C 1.53062 * 111.39111 * 274.42911 * 9 8 7 12 12 C 1.53142 * 109.21332 * 142.90909 * 11 9 8 13 13 N 1.45288 * 108.66314 * 302.25738 * 12 11 9 14 14 C 1.36937 * 118.84793 * 236.60431 * 13 12 11 15 15 H 1.07993 * 120.00733 * 23.59716 * 14 13 12 16 16 C 1.38816 * 119.99536 * 203.60370 * 14 13 12 17 17 N 1.31614 * 120.00482 * 14.47345 * 16 14 13 18 18 Si 1.86800 * 119.99628 * 194.47276 * 16 14 13 19 19 H 1.48504 * 109.47175 * 94.97145 * 18 16 14 20 20 H 1.48502 * 109.47217 * 214.96782 * 18 16 14 21 21 H 1.48499 * 109.47449 * 334.96676 * 18 16 14 22 22 C 1.45704 * 121.39479 * 54.96139 * 13 12 11 23 23 C 1.46468 * 136.54234 * 179.97438 * 7 5 4 24 24 H 1.09005 * 111.43791 * 97.09273 * 23 7 5 25 25 C 1.50695 * 109.47318 * 239.99687 * 2 1 3 26 26 C 1.38231 * 119.99916 * 239.72906 * 25 2 1 27 27 C 1.38239 * 119.99863 * 179.79247 * 26 25 2 28 28 C 1.38234 * 119.99776 * 0.45465 * 27 26 25 29 29 C 1.38236 * 120.00362 * 359.77759 * 28 27 26 30 30 C 1.38236 * 119.99947 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47298 * 300.00105 * 1 2 3 32 32 H 1.09008 * 109.46397 * 60.00135 * 1 2 3 33 33 H 1.08995 * 109.47204 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46240 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47128 * 299.99583 * 3 2 1 36 36 H 1.08998 * 109.47353 * 59.99928 * 3 2 1 37 37 H 1.09000 * 109.47406 * 179.97438 * 4 2 1 38 38 H 1.09004 * 109.46659 * 60.00568 * 4 2 1 39 39 H 1.08998 * 113.52959 * 266.07720 * 8 7 5 40 40 H 1.08999 * 113.52511 * 36.64005 * 8 7 5 41 41 H 1.09003 * 109.51366 * 262.82843 * 11 9 8 42 42 H 1.09004 * 109.51559 * 22.92885 * 11 9 8 43 43 H 1.08994 * 109.71109 * 61.26808 * 12 11 9 44 44 H 1.09000 * 109.70788 * 181.89682 * 12 11 9 45 45 H 0.96998 * 120.00473 * 180.02562 * 17 16 14 46 46 H 1.08995 * 108.78832 * 200.74928 * 22 13 12 47 47 H 1.08996 * 108.78341 * 82.53602 * 22 13 12 48 48 H 1.08000 * 120.00139 * 359.97438 * 26 25 2 49 49 H 1.07994 * 120.00311 * 180.25281 * 27 26 25 50 50 H 1.08007 * 120.00242 * 179.79167 * 28 27 26 51 51 H 1.08003 * 120.00238 * 179.97438 * 29 28 27 52 52 H 1.07994 * 120.00427 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5376 -0.0107 2.4797 6 8 0.8407 0.9755 2.3684 7 7 1.8636 -0.4708 3.7039 8 6 2.6533 -1.5872 4.2511 9 6 2.9393 -0.6979 5.4602 10 1 2.9591 -1.2213 6.4161 11 6 4.1445 0.2121 5.2113 12 6 3.8880 1.5763 5.8582 13 7 2.6665 2.1324 5.3018 14 6 2.7132 3.3638 4.7047 15 1 3.6462 3.7373 4.3093 16 6 1.5612 4.1323 4.6078 17 7 0.5016 3.8231 5.3247 18 14 1.5149 5.6051 3.4598 19 1 0.9289 5.1992 2.1571 20 1 0.6838 6.6775 4.0636 21 1 2.8951 6.1098 3.2460 22 6 1.4114 1.3932 5.3366 23 6 1.5926 -0.0866 5.0910 24 1 0.7653 -0.6603 5.5090 25 6 2.0325 -0.7104 -1.2304 26 6 2.8318 -1.8310 -1.1034 27 6 3.2891 -2.4853 -2.2321 28 6 2.9548 -2.0133 -3.4876 29 6 2.1593 -0.8899 -3.6146 30 6 1.6987 -0.2380 -2.4860 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5139 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.1300 -0.7216 1.2492 38 1 1.6767 -1.7488 1.2493 39 1 2.0580 -2.4719 4.4767 40 1 3.5453 -1.8161 3.6680 41 1 5.0362 -0.2366 5.6492 42 1 4.2900 0.3385 4.1384 43 1 3.7637 1.4554 6.9342 44 1 4.7273 2.2421 5.6571 45 1 -0.3035 4.3598 5.2567 46 1 0.7451 1.7967 4.5741 47 1 0.9487 1.5329 6.3135 48 1 3.0966 -2.1972 -0.1225 49 1 3.9102 -3.3631 -2.1330 50 1 3.3148 -2.5225 -4.3695 51 1 1.8985 -0.5209 -4.5955 52 1 1.0776 0.6399 -2.5851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084853047.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:01 Heat of formation + Delta-G solvation = 41.160667 kcal Electronic energy + Delta-G solvation = -31802.639076 eV Core-core repulsion = 27961.459119 eV Total energy + Delta-G solvation = -3841.179957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.04228 -40.90163 -39.28830 -37.15219 -36.48691 -33.96925 -32.11321 -31.86581 -31.21843 -30.57139 -28.94118 -28.20033 -28.09719 -25.64194 -24.60600 -23.84311 -23.16230 -22.54507 -21.30216 -20.06970 -19.42079 -18.58748 -17.84972 -17.34552 -17.11630 -16.72748 -16.26894 -15.86096 -15.79033 -15.75434 -15.41366 -15.05659 -14.94464 -14.81246 -14.52730 -14.35190 -14.23266 -14.00031 -13.72960 -13.44141 -13.34320 -13.17563 -12.98413 -12.80369 -12.72037 -12.69057 -12.38074 -12.30735 -12.22703 -12.16940 -11.94173 -11.92703 -11.70919 -11.57942 -11.45339 -11.44453 -11.01805 -10.59233 -10.05444 -9.76380 -9.56255 -9.37177 -8.64893 -7.84046 -5.26130 0.50741 0.55291 1.34343 1.41986 1.44985 1.92355 2.06899 2.48955 2.93162 3.32102 3.48955 3.52810 3.64616 3.77754 3.91663 3.97366 4.05822 4.18727 4.20307 4.26092 4.30585 4.33767 4.50246 4.54627 4.59403 4.64408 4.67232 4.68647 4.72421 4.73937 4.75433 4.80088 4.89986 4.97013 5.00051 5.01679 5.05363 5.09775 5.15641 5.18700 5.22062 5.35294 5.42493 5.45190 5.48330 5.58264 5.67326 5.68172 5.73934 5.79261 5.87202 6.17498 6.42088 7.11082 7.22602 7.51815 8.01867 8.35682 9.20694 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.004020 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.613315 B = 6962.937478 C = 8414.777522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.002 3.998 3 C -0.144 4.144 4 C -0.110 4.110 5 C 0.525 3.475 6 O -0.562 6.562 7 N -0.643 5.643 8 C 0.110 3.890 9 C -0.104 4.104 10 H 0.124 0.876 11 C -0.103 4.103 12 C 0.142 3.858 13 N -0.599 5.599 14 C -0.255 4.255 15 H 0.058 0.942 16 C -0.039 4.039 17 N -0.931 5.931 18 Si 0.948 3.052 19 H -0.300 1.300 20 H -0.291 1.291 21 H -0.266 1.266 22 C 0.184 3.816 23 C 0.103 3.897 24 H 0.086 0.914 25 C -0.074 4.074 26 C -0.131 4.131 27 C -0.120 4.120 28 C -0.132 4.132 29 C -0.126 4.126 30 C -0.131 4.131 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.043 0.957 43 H 0.021 0.979 44 H 0.049 0.951 45 H 0.243 0.757 46 H 0.054 0.946 47 H -0.010 1.010 48 H 0.139 0.861 49 H 0.146 0.854 50 H 0.143 0.857 51 H 0.136 0.864 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.592 -20.253 -11.602 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.001 3.999 3 C -0.201 4.201 4 C -0.149 4.149 5 C 0.316 3.684 6 O -0.442 6.442 7 N -0.379 5.379 8 C -0.011 4.011 9 C -0.123 4.123 10 H 0.142 0.858 11 C -0.142 4.142 12 C 0.016 3.984 13 N -0.322 5.322 14 C -0.385 4.385 15 H 0.076 0.924 16 C -0.234 4.234 17 N -0.578 5.578 18 Si 0.778 3.222 19 H -0.228 1.228 20 H -0.218 1.218 21 H -0.190 1.190 22 C 0.058 3.942 23 C -0.001 4.001 24 H 0.104 0.896 25 C -0.074 4.074 26 C -0.149 4.149 27 C -0.138 4.138 28 C -0.150 4.150 29 C -0.143 4.143 30 C -0.149 4.149 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.007 0.993 48 H 0.157 0.843 49 H 0.164 0.836 50 H 0.161 0.839 51 H 0.154 0.846 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.030 -19.567 -11.857 23.934 hybrid contribution -0.861 1.746 -0.383 1.984 sum 6.169 -17.821 -12.240 22.482 Atomic orbital electron populations 1.22003 0.94049 1.01595 1.02267 1.19064 0.95655 0.94044 0.91103 1.22006 1.00024 0.96034 1.02015 1.21717 1.02679 1.00505 0.90042 1.20712 0.79774 0.84226 0.83675 1.90666 1.39873 1.27906 1.85715 1.49804 1.52948 1.31043 1.04079 1.23271 0.95522 0.90169 0.92133 1.22557 0.93094 0.96491 1.00169 0.85776 1.21713 0.97116 0.95262 1.00139 1.20720 0.88210 0.94319 0.95109 1.43387 1.05780 1.16124 1.66884 1.19396 0.95195 0.93968 1.29954 0.92410 1.25480 0.97290 1.00318 1.00324 1.70173 1.03948 1.41661 1.42009 0.85530 0.77763 0.79941 0.78984 1.22822 1.21764 1.19003 1.19758 0.88098 0.88586 0.97806 1.22645 0.99082 0.97080 0.81336 0.89618 1.19802 0.97927 0.96048 0.93646 1.21398 0.97932 0.95331 1.00232 1.21469 0.99754 1.00355 0.92197 1.21473 0.98389 0.96680 0.98459 1.21377 0.98091 0.96249 0.98622 1.21108 1.00913 1.00365 0.92534 0.92563 0.92820 0.92218 0.93385 0.92900 0.92984 0.87886 0.86668 0.86953 0.88504 0.88417 0.93771 0.96104 0.93250 0.94819 0.92761 0.99251 0.84300 0.83632 0.83923 0.84609 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 7.99 71.99 0.58 -3.82 16 2 C 0.00 0.05 0.60 -52.93 -0.03 0.02 16 3 C -0.14 -5.06 7.99 71.98 0.58 -4.48 16 4 C -0.11 -2.92 3.28 29.85 0.10 -2.82 16 5 C 0.52 19.56 7.43 87.66 0.65 20.21 16 6 O -0.56 -27.47 10.59 -3.00 -0.03 -27.51 16 7 N -0.64 -21.32 3.27 -877.20 -2.87 -24.19 16 8 C 0.11 2.25 7.76 80.66 0.63 2.88 16 9 C -0.10 -2.69 4.51 -11.02 -0.05 -2.74 16 10 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 11 C -0.10 -3.04 5.67 30.66 0.17 -2.86 16 12 C 0.14 5.75 6.39 86.65 0.55 6.31 16 13 N -0.60 -31.22 3.02 -710.41 -2.14 -33.36 16 14 C -0.25 -15.05 9.47 84.03 0.80 -14.26 16 15 H 0.06 3.38 7.78 -2.91 -0.02 3.35 16 16 C -0.04 -2.37 4.94 84.86 0.42 -1.95 16 17 N -0.93 -59.86 10.94 21.65 0.24 -59.62 16 18 Si 0.95 50.25 29.58 68.60 2.03 52.28 16 19 H -0.30 -16.48 7.11 99.48 0.71 -15.78 16 20 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 21 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 22 C 0.18 9.45 4.62 85.91 0.40 9.84 16 23 C 0.10 3.79 4.09 38.69 0.16 3.95 16 24 H 0.09 2.85 8.14 -2.38 -0.02 2.84 16 25 C -0.07 -1.77 4.76 -19.87 -0.09 -1.87 16 26 C -0.13 -2.54 8.98 22.27 0.20 -2.34 16 27 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 28 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 29 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 30 C -0.13 -3.03 8.71 22.27 0.19 -2.84 16 31 H 0.06 2.19 5.51 -2.39 -0.01 2.18 16 32 H 0.05 1.56 7.39 -2.38 -0.02 1.54 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.73 7.39 -2.39 -0.02 1.71 16 36 H 0.05 2.36 5.51 -2.39 -0.01 2.34 16 37 H 0.10 2.43 7.50 -2.39 -0.02 2.41 16 38 H 0.12 2.37 7.53 -2.38 -0.02 2.35 16 39 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 1.53 8.01 -2.39 -0.02 1.51 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.04 1.45 7.64 -2.38 -0.02 1.43 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 2.01 7.80 -2.39 -0.02 1.99 16 45 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.05 3.34 4.95 -2.39 -0.01 3.33 16 47 H -0.01 -0.59 7.99 -2.39 -0.02 -0.61 16 48 H 0.14 2.17 5.89 -2.91 -0.02 2.15 16 49 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 50 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 51 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 52 H 0.11 2.68 7.10 -2.91 -0.02 2.65 16 Total: -1.00 -80.92 393.51 4.03 -76.88 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.90 Total: 18.05 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.91 Total: -2.53 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -4.77 Total: -117.17 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.03 Total: -27.51 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.03 Total: 52.28 kcal Total: -80.92 4.03 -76.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084853047.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.042 kcal (2) G-P(sol) polarization free energy of solvation -80.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds