Wall clock time and date at job start Wed Apr 1 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46877 * 2 1 4 4 H 1.08995 * 109.87549 * 56.23134 * 3 2 1 5 5 C 1.54327 * 109.87960 * 295.21032 * 3 2 1 6 6 H 1.09000 * 110.72161 * 336.75497 * 5 3 2 7 7 N 1.46506 * 110.71710 * 100.03014 * 5 3 2 8 8 C 1.34777 * 119.99927 * 204.99729 * 7 5 3 9 9 O 1.21278 * 119.99889 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99585 * 179.97438 * 8 7 5 11 11 H 1.08991 * 115.55463 * 353.34729 * 10 8 7 12 12 C 1.53006 * 117.49429 * 207.63927 * 10 8 7 13 13 C 1.53002 * 60.00005 * 252.51443 * 12 10 8 14 14 C 1.53001 * 117.51774 * 252.52099 * 13 12 10 15 15 C 1.50698 * 117.49692 * 107.49330 * 13 12 10 16 16 C 1.38241 * 119.99778 * 232.67643 * 15 13 12 17 17 C 1.38233 * 120.00035 * 179.74795 * 16 15 13 18 18 C 1.38240 * 119.99853 * 0.54601 * 17 16 15 19 19 C 1.38240 * 119.99796 * 359.70142 * 18 17 16 20 20 C 1.38226 * 119.99992 * 0.02975 * 19 18 17 21 21 C 1.55156 * 102.93990 * 218.38823 * 5 3 2 22 22 C 1.54906 * 101.58402 * 35.50833 * 21 5 3 23 23 N 1.47024 * 109.88353 * 177.40772 * 3 2 1 24 24 C 1.36935 * 125.64451 * 298.31118 * 23 3 2 25 25 H 1.08001 * 120.00474 * 346.20525 * 24 23 3 26 26 C 1.38820 * 120.00083 * 166.20095 * 24 23 3 27 27 N 1.31623 * 119.99571 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 120.00163 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.46932 * 59.99757 * 28 26 24 30 30 H 1.48499 * 109.47156 * 179.97438 * 28 26 24 31 31 H 1.48493 * 109.46956 * 300.00036 * 28 26 24 32 32 H 1.09007 * 109.46693 * 178.76857 * 1 2 3 33 33 H 1.08997 * 109.47258 * 58.77435 * 1 2 3 34 34 H 1.08991 * 109.47108 * 298.76367 * 1 2 3 35 35 H 1.09001 * 109.47163 * 119.99837 * 2 1 3 36 36 H 1.08997 * 109.47319 * 239.99529 * 2 1 3 37 37 H 0.96999 * 119.99783 * 24.99991 * 7 5 3 38 38 H 1.09001 * 117.50103 * 0.02562 * 12 10 8 39 39 H 1.09000 * 117.49574 * 145.02708 * 12 10 8 40 40 H 1.09000 * 109.47128 * 128.63330 * 14 13 12 41 41 H 1.09005 * 109.46810 * 248.63224 * 14 13 12 42 42 H 1.08999 * 109.47184 * 8.63049 * 14 13 12 43 43 H 1.07999 * 119.99907 * 359.97438 * 16 15 13 44 44 H 1.07998 * 120.00625 * 180.27313 * 17 16 15 45 45 H 1.08000 * 120.00016 * 179.73019 * 18 17 16 46 46 H 1.08000 * 119.99553 * 179.97438 * 19 18 17 47 47 H 1.08004 * 120.00108 * 179.97438 * 20 19 18 48 48 H 1.09008 * 110.99873 * 153.58223 * 21 5 3 49 49 H 1.09000 * 111.00865 * 277.39024 * 21 5 3 50 50 H 1.09006 * 110.36936 * 81.82114 * 22 21 5 51 51 H 1.08995 * 110.36724 * 204.14787 * 22 21 5 52 52 H 0.97001 * 119.99667 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6263 1.9818 0.8521 5 6 1.6320 2.1433 -1.3131 6 1 1.4518 1.4118 -2.1008 7 7 0.4514 2.9856 -1.1058 8 6 -0.3600 3.2754 -2.1423 9 8 -0.1125 2.8391 -3.2465 10 6 -1.5747 4.1413 -1.9289 11 1 -1.7914 4.4003 -0.8926 12 6 -2.7639 3.9342 -2.8692 13 6 -1.8942 5.1863 -2.9999 14 6 -2.4933 6.5149 -2.5341 15 6 -0.9701 5.2707 -4.1873 16 6 0.3741 5.5335 -3.9997 17 6 1.2227 5.6058 -5.0884 18 6 0.7252 5.4265 -6.3657 19 6 -0.6199 5.1688 -6.5536 20 6 -1.4675 5.0910 -5.4645 21 6 2.8746 3.0116 -1.6440 22 6 4.0290 2.1017 -1.1551 23 7 3.5088 1.4536 0.0625 24 6 4.2680 0.9467 1.0833 25 1 3.8059 0.6952 2.0265 26 6 5.6315 0.7561 0.9057 27 7 6.1945 1.0621 -0.2440 28 14 6.6672 0.0653 2.2984 29 1 6.1621 -1.2807 2.6702 30 1 8.0813 -0.0414 1.8578 31 1 6.5813 0.9684 3.4741 32 1 -0.3633 -1.0275 -0.0221 33 1 -0.3633 0.5327 -0.8788 34 1 -0.3633 0.4945 0.9008 35 1 1.8934 -0.5138 0.8900 36 1 1.8934 -0.5139 -0.8899 37 1 0.2537 3.3348 -0.2227 38 1 -2.6677 3.1714 -3.6418 39 1 -3.7631 4.0569 -2.4514 40 1 -1.8009 7.0058 -1.8503 41 1 -2.6681 7.1571 -3.3974 42 1 -3.4378 6.3282 -2.0230 43 1 0.7618 5.6787 -3.0022 44 1 2.2737 5.8067 -4.9416 45 1 1.3875 5.4873 -7.2166 46 1 -1.0086 5.0292 -7.5515 47 1 -2.5184 4.8901 -5.6113 48 1 2.9487 3.1949 -2.7160 49 1 2.8544 3.9500 -1.0898 50 1 4.2682 1.3533 -1.9106 51 1 4.9096 2.6995 -0.9201 52 1 7.1472 0.9286 -0.3682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087664483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:29 Heat of formation + Delta-G solvation = 33.075966 kcal Electronic energy + Delta-G solvation = -30987.040258 eV Core-core repulsion = 27145.509722 eV Total energy + Delta-G solvation = -3841.530536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.56762 -38.99698 -37.83900 -36.55429 -33.92066 -32.71601 -31.69289 -30.79272 -30.67430 -29.12990 -28.68733 -26.67441 -24.86070 -23.67345 -23.14002 -22.36732 -21.85286 -20.41938 -20.12546 -19.80957 -19.04033 -17.36565 -16.84756 -16.44238 -15.85045 -15.02829 -14.86948 -14.70483 -14.57718 -14.41826 -14.12152 -13.87698 -13.72926 -13.49007 -13.28296 -13.16100 -12.89541 -12.66012 -12.60460 -12.26385 -12.00833 -11.93485 -11.90950 -11.60340 -11.12972 -11.10175 -11.04357 -10.87893 -10.82542 -10.60106 -10.52371 -10.41475 -10.25385 -10.10761 -10.08991 -9.72201 -9.63792 -9.45565 -8.78112 -8.65482 -8.59390 -8.43423 -6.80545 -5.74407 -3.10721 1.45542 1.53894 2.60577 3.35338 3.39912 3.44395 3.45228 3.73076 3.88186 4.42901 4.48393 4.57415 4.65524 4.85428 5.02971 5.06047 5.09262 5.19651 5.29770 5.37808 5.44038 5.46077 5.49384 5.54892 5.55643 5.56824 5.70904 5.72487 5.77999 5.83491 5.84456 5.89428 5.95168 6.08693 6.10807 6.12522 6.25201 6.35828 6.43921 6.48850 6.55874 6.60578 6.62181 6.68463 6.70627 6.78703 6.97561 7.10595 7.18913 7.52475 7.61242 7.79008 7.84282 8.27188 8.54683 9.18723 9.79835 10.47761 11.37159 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.003002 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.293710 B = 9323.598228 C =10319.813781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.034 0.966 5 C 0.141 3.859 6 H 0.092 0.908 7 N -0.713 5.713 8 C 0.538 3.462 9 O -0.529 6.529 10 C -0.180 4.180 11 H 0.119 0.881 12 C -0.134 4.134 13 C -0.060 4.060 14 C -0.112 4.112 15 C -0.035 4.035 16 C -0.091 4.091 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.107 4.107 21 C -0.154 4.154 22 C 0.174 3.826 23 N -0.594 5.594 24 C -0.228 4.228 25 H 0.074 0.926 26 C -0.003 4.003 27 N -0.917 5.917 28 Si 0.910 3.090 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.285 1.285 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.396 0.604 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.026 0.974 51 H 0.074 0.926 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.520 10.607 -6.753 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.051 0.949 5 C 0.037 3.963 6 H 0.110 0.890 7 N -0.363 5.363 8 C 0.324 3.676 9 O -0.405 6.405 10 C -0.202 4.202 11 H 0.137 0.863 12 C -0.171 4.171 13 C -0.061 4.061 14 C -0.169 4.169 15 C -0.035 4.035 16 C -0.109 4.109 17 C -0.132 4.132 18 C -0.140 4.140 19 C -0.141 4.141 20 C -0.125 4.125 21 C -0.194 4.194 22 C 0.049 3.951 23 N -0.319 5.319 24 C -0.357 4.357 25 H 0.092 0.908 26 C -0.200 4.200 27 N -0.563 5.563 28 Si 0.740 3.260 29 H -0.211 1.211 30 H -0.216 1.216 31 H -0.212 1.212 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.230 0.770 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.044 0.956 51 H 0.093 0.907 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.064 10.230 -7.514 22.078 hybrid contribution 0.636 -0.452 1.295 1.512 sum -17.428 9.778 -6.219 20.929 Atomic orbital electron populations 1.21772 0.97270 1.00466 1.00941 1.22008 0.93573 0.99231 1.02290 1.21066 0.86938 0.93320 0.93404 0.94872 1.22043 0.83458 0.92362 0.98484 0.88965 1.45992 1.26744 1.52245 1.11292 1.19422 0.83008 0.80559 0.84643 1.90726 1.73397 1.52578 1.23792 1.22474 0.97252 1.02814 0.97633 0.86285 1.23187 0.93836 0.99175 1.00946 1.20151 0.99885 0.91516 0.94510 1.21363 1.00128 0.93993 1.01372 1.18753 0.93002 0.99316 0.92436 1.20825 0.92774 0.98712 0.98618 1.21071 0.99514 0.99936 0.92671 1.21082 0.95494 1.00423 0.97049 1.21014 0.93839 1.00826 0.98409 1.20798 0.99435 1.00372 0.91896 1.23400 0.96886 0.98972 1.00163 1.21431 0.93213 0.92855 0.87586 1.44434 0.98365 1.68258 1.20793 1.18898 0.89655 1.35902 0.91226 0.90794 1.24893 0.97168 1.00990 0.96973 1.69923 1.10718 1.52748 1.22921 0.86236 0.79473 0.79066 0.81190 1.21115 1.21603 1.21151 0.93793 0.93143 0.93544 0.91834 0.92460 0.77048 0.87533 0.87797 0.91746 0.91550 0.91854 0.86924 0.86290 0.86509 0.86507 0.86582 0.92075 0.92221 0.95605 0.90740 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.71 37.16 0.36 -1.86 16 2 C -0.13 -2.48 5.41 -26.73 -0.14 -2.62 16 3 C 0.16 3.19 2.94 -66.95 -0.20 3.00 16 4 H 0.03 0.65 7.71 -51.93 -0.40 0.25 16 5 C 0.14 2.54 1.96 -66.09 -0.13 2.41 16 6 H 0.09 1.85 7.19 -51.93 -0.37 1.48 16 7 N -0.71 -10.21 4.67 -52.03 -0.24 -10.46 16 8 C 0.54 7.74 6.35 -10.99 -0.07 7.67 16 9 O -0.53 -9.50 13.95 5.56 0.08 -9.42 16 10 C -0.18 -1.93 5.89 -91.77 -0.54 -2.47 16 11 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.13 -1.29 9.20 -26.73 -0.25 -1.54 16 13 C -0.06 -0.61 2.17 -155.66 -0.34 -0.94 16 14 C -0.11 -0.85 9.84 37.16 0.37 -0.49 16 15 C -0.04 -0.43 3.59 -104.62 -0.38 -0.81 16 16 C -0.09 -1.24 7.82 -39.58 -0.31 -1.54 16 17 C -0.11 -1.50 10.05 -39.58 -0.40 -1.90 16 18 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 19 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 20 C -0.11 -1.26 9.52 -39.59 -0.38 -1.64 16 21 C -0.15 -3.02 6.77 -24.59 -0.17 -3.18 16 22 C 0.17 4.22 5.42 -2.53 -0.01 4.21 16 23 N -0.59 -14.67 3.13 -162.57 -0.51 -15.18 16 24 C -0.23 -6.19 9.76 -15.06 -0.15 -6.33 16 25 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 26 C 0.00 -0.09 5.47 -17.43 -0.10 -0.18 16 27 N -0.92 -26.60 10.55 55.49 0.59 -26.01 16 28 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 29 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 31 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.77 6.94 -51.93 -0.36 0.41 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.28 7.92 -51.93 -0.41 0.87 16 36 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 37 H 0.40 4.80 8.37 -40.82 -0.34 4.46 16 38 H 0.11 1.22 7.93 -51.93 -0.41 0.81 16 39 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 42 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 43 H 0.11 1.53 7.89 -52.49 -0.41 1.12 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 47 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 48 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 51 H 0.07 2.00 6.87 -51.93 -0.36 1.64 16 52 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 413.36 15.07 6.23 6.23 Total: -1.00 -31.44 413.36 -11.43 -42.87 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -8.93 Total: 7.10 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.62 Total: -11.92 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.17 Total: -51.65 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.44 -11.43 -42.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087664483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.947 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds