Wall clock time and date at job start Wed Apr 1 2020 02:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47035 * 2 1 4 4 H 1.09000 * 109.87846 * 54.15624 * 3 2 1 5 5 C 1.54325 * 109.88553 * 292.98152 * 3 2 1 6 6 H 1.09004 * 110.71383 * 336.93157 * 5 3 2 7 7 N 1.46497 * 110.72077 * 100.02305 * 5 3 2 8 8 C 1.34770 * 120.00315 * 205.00086 * 7 5 3 9 9 O 1.21289 * 119.99854 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00495 * 179.97438 * 8 7 5 11 11 C 1.53000 * 110.26562 * 57.92867 * 10 8 7 12 12 C 1.54348 * 110.30866 * 180.02562 * 10 8 7 13 13 C 1.54343 * 102.39216 * 92.57528 * 12 10 8 14 14 C 1.51369 * 105.16815 * 26.35261 * 13 12 10 15 15 C 1.38495 * 130.39534 * 162.80825 * 14 13 12 16 16 C 1.38108 * 120.21713 * 179.97438 * 15 14 13 17 17 C 1.38255 * 119.93606 * 359.97438 * 16 15 14 18 18 C 1.38097 * 119.93167 * 359.97438 * 17 16 15 19 19 C 1.38223 * 109.75860 * 342.80681 * 14 13 12 20 20 C 1.55276 * 103.00895 * 218.47123 * 5 3 2 21 21 C 1.54906 * 101.52866 * 35.35669 * 20 5 3 22 22 N 1.47021 * 109.88457 * 175.17428 * 3 2 1 23 23 C 1.36939 * 125.64825 * 298.37996 * 22 3 2 24 24 H 1.08004 * 119.99660 * 347.97396 * 23 22 3 25 25 C 1.38811 * 120.00263 * 167.97619 * 23 22 3 26 26 N 1.31617 * 119.99790 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99961 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46943 * 90.00111 * 27 25 23 29 29 H 1.48497 * 109.47064 * 209.99789 * 27 25 23 30 30 H 1.48498 * 109.47244 * 330.00010 * 27 25 23 31 31 H 1.09000 * 109.46937 * 185.45200 * 1 2 3 32 32 H 1.09007 * 109.46919 * 305.44888 * 1 2 3 33 33 H 1.08994 * 109.47353 * 65.44771 * 1 2 3 34 34 H 1.09003 * 109.46823 * 240.00284 * 2 1 3 35 35 H 1.08997 * 109.47208 * 119.99687 * 2 1 3 36 36 H 0.97001 * 119.99963 * 25.00867 * 7 5 3 37 37 H 1.09005 * 109.47436 * 60.70253 * 11 10 8 38 38 H 1.08997 * 109.47249 * 180.70166 * 11 10 8 39 39 H 1.08997 * 109.47196 * 300.70075 * 11 10 8 40 40 H 1.08996 * 110.82263 * 210.80549 * 12 10 8 41 41 H 1.09002 * 110.81729 * 334.35334 * 12 10 8 42 42 H 1.08997 * 110.30391 * 145.27185 * 13 12 10 43 43 H 1.08997 * 110.30909 * 267.33247 * 13 12 10 44 44 H 1.07999 * 119.89202 * 0.02562 * 15 14 13 45 45 H 1.08006 * 120.02903 * 179.97438 * 16 15 14 46 46 H 1.07998 * 120.03218 * 179.97438 * 17 16 15 47 47 H 1.07999 * 119.88828 * 180.02562 * 18 17 16 48 48 H 1.08998 * 110.95283 * 277.33281 * 20 5 3 49 49 H 1.08999 * 111.10101 * 153.45041 * 20 5 3 50 50 H 1.09000 * 110.36538 * 204.23255 * 21 20 5 51 51 H 1.09000 * 110.36564 * 82.02249 * 21 20 5 52 52 H 0.96995 * 119.99867 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9920 0.8309 5 6 1.6807 2.1263 -1.3361 6 1 1.5263 1.3843 -2.1196 7 7 0.4935 2.9708 -1.1833 8 6 -0.2792 3.2470 -2.2524 9 8 0.0081 2.7958 -3.3410 10 6 -1.5008 4.1153 -2.0952 11 6 -1.1106 5.4811 -1.5266 12 6 -2.2162 4.2842 -3.4524 13 6 -3.2485 3.1372 -3.4277 14 6 -3.5173 2.8778 -1.9608 15 6 -4.5583 2.2033 -1.3447 16 6 -4.5954 2.0903 0.0313 17 6 -3.5904 2.6516 0.7970 18 6 -2.5510 3.3236 0.1844 19 6 -2.5131 3.4398 -1.1952 20 6 2.9359 2.9900 -1.6352 21 6 4.0703 2.0872 -1.0897 22 7 3.5055 1.4548 0.1163 23 6 4.2267 0.9602 1.1701 24 1 3.7259 0.6928 2.0890 25 6 5.6012 0.8025 1.0575 26 7 6.2113 1.1280 -0.0623 27 14 6.5849 0.1285 2.4954 28 1 6.6570 -1.3514 2.3954 29 1 7.9576 0.6941 2.4644 30 1 5.9222 0.5069 3.7693 31 1 -0.3633 -1.0230 0.0976 32 1 -0.3633 0.5961 0.8372 33 1 -0.3634 0.4270 -0.9347 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.2636 3.3315 -0.3127 37 1 -0.4203 5.9755 -2.2102 38 1 -2.0042 6.0935 -1.4067 39 1 -0.6291 5.3473 -0.5580 40 1 -2.7138 5.2523 -3.5102 41 1 -1.5158 4.1574 -4.2779 42 1 -4.1654 3.4425 -3.9319 43 1 -2.8358 2.2465 -3.9013 44 1 -5.3431 1.7635 -1.9422 45 1 -5.4089 1.5640 0.5086 46 1 -3.6181 2.5645 1.8731 47 1 -1.7661 3.7614 0.7832 48 1 2.8957 3.9361 -1.0954 49 1 3.0507 3.1577 -2.7061 50 1 4.9418 2.6881 -0.8302 51 1 4.3386 1.3289 -1.8253 52 1 7.1717 1.0175 -0.1412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087844403.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:20 Heat of formation + Delta-G solvation = 2.131842 kcal Electronic energy + Delta-G solvation = -31537.257937 eV Core-core repulsion = 27694.385564 eV Total energy + Delta-G solvation = -3842.872374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.12142 -39.14226 -37.73215 -35.76016 -34.11767 -32.87802 -32.38095 -31.50732 -29.96208 -29.07209 -28.71142 -26.58040 -25.23206 -24.40505 -22.97049 -22.51711 -21.56639 -21.11564 -20.23920 -20.00642 -18.98207 -17.36284 -16.85496 -16.10852 -15.77244 -15.45321 -15.23649 -14.76774 -14.66781 -14.40117 -13.99131 -13.86242 -13.79238 -13.57184 -13.18635 -13.08042 -12.78704 -12.67515 -12.58014 -12.44355 -11.98473 -11.91249 -11.77239 -11.63401 -11.35793 -11.14226 -11.11888 -11.01314 -10.87750 -10.86145 -10.82636 -10.59756 -10.42085 -10.26986 -10.07957 -9.75917 -9.64608 -9.63106 -8.94181 -8.66880 -8.59727 -8.52280 -6.82236 -5.73960 -3.10329 1.16162 1.24179 2.80743 3.32773 3.38982 3.44270 3.45680 3.66878 4.18838 4.29986 4.47773 4.70029 4.71466 4.85419 4.89512 4.99249 5.11102 5.27583 5.30520 5.35151 5.37179 5.43795 5.48012 5.53836 5.56393 5.62992 5.68452 5.78853 5.80642 5.82566 5.85470 5.89014 5.91770 6.03328 6.06389 6.09559 6.25117 6.30672 6.34559 6.36067 6.44079 6.48881 6.49429 6.59116 6.69358 6.76785 6.82920 6.96693 7.16318 7.53380 7.59920 7.76505 7.80285 8.26864 8.44312 9.18583 9.79651 10.46792 11.37030 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.003201 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.328435 B = 8745.240383 C = 9590.374061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.162 3.838 4 H 0.034 0.966 5 C 0.138 3.862 6 H 0.093 0.907 7 N -0.708 5.708 8 C 0.530 3.470 9 O -0.539 6.539 10 C -0.041 4.041 11 C -0.137 4.137 12 C -0.102 4.102 13 C -0.083 4.083 14 C -0.085 4.085 15 C -0.111 4.111 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.096 4.096 19 C -0.087 4.087 20 C -0.156 4.156 21 C 0.172 3.828 22 N -0.594 5.594 23 C -0.226 4.226 24 H 0.075 0.925 25 C -0.004 4.004 26 N -0.917 5.917 27 Si 0.910 3.090 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.079 0.921 51 H 0.025 0.975 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.626 7.192 -2.528 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.054 3.946 4 H 0.051 0.949 5 C 0.033 3.967 6 H 0.111 0.889 7 N -0.357 5.357 8 C 0.315 3.685 9 O -0.416 6.416 10 C -0.045 4.045 11 C -0.195 4.195 12 C -0.140 4.140 13 C -0.120 4.120 14 C -0.085 4.085 15 C -0.129 4.129 16 C -0.133 4.133 17 C -0.138 4.138 18 C -0.114 4.114 19 C -0.088 4.088 20 C -0.195 4.195 21 C 0.047 3.953 22 N -0.319 5.319 23 C -0.355 4.355 24 H 0.093 0.907 25 C -0.201 4.201 26 N -0.564 5.564 27 Si 0.740 3.260 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.097 0.903 51 H 0.043 0.957 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.140 6.821 -3.258 22.451 hybrid contribution 0.455 -0.399 1.300 1.434 sum -20.685 6.422 -1.958 21.748 Atomic orbital electron populations 1.21733 0.97106 1.00341 1.00942 1.22014 0.93644 0.99165 1.02271 1.21058 0.87112 0.93399 0.93057 0.94889 1.22138 0.83337 0.92462 0.98731 0.88914 1.46008 1.27197 1.51600 1.10899 1.20079 0.83287 0.80697 0.84417 1.90669 1.72367 1.52587 1.25969 1.20326 0.92587 0.95332 0.96206 1.21830 1.02195 0.94185 1.01244 1.22316 0.97475 0.98358 0.95824 1.21070 0.99231 0.99549 0.92138 1.20635 0.94652 0.97145 0.96097 1.20607 0.98041 0.99658 0.94572 1.21051 0.98915 0.99766 0.93601 1.21017 0.94506 0.98370 0.99904 1.20611 0.98591 0.99191 0.93007 1.20191 0.95750 0.99564 0.93251 1.23439 0.96731 0.99078 1.00293 1.21474 0.93199 0.93179 0.87426 1.44458 0.98498 1.69165 1.19766 1.18952 0.89349 1.35943 0.91215 0.90679 1.24862 0.96862 1.01176 0.97220 1.69923 1.08817 1.52880 1.24796 0.86153 0.79530 0.78762 0.81506 1.21558 1.21694 1.20674 0.93843 0.93502 0.93413 0.92513 0.91748 0.77075 0.91456 0.91298 0.91899 0.90400 0.88644 0.90633 0.89686 0.86311 0.85967 0.85773 0.86229 0.92090 0.91957 0.90281 0.95718 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.64 37.16 0.36 -1.88 16 2 C -0.13 -2.49 5.43 -26.73 -0.15 -2.64 16 3 C 0.16 3.23 2.92 -66.95 -0.20 3.04 16 4 H 0.03 0.65 7.72 -51.93 -0.40 0.25 16 5 C 0.14 2.51 2.09 -66.03 -0.14 2.37 16 6 H 0.09 1.87 7.17 -51.93 -0.37 1.49 16 7 N -0.71 -10.48 4.81 -51.97 -0.25 -10.73 16 8 C 0.53 7.88 6.53 -10.99 -0.07 7.81 16 9 O -0.54 -9.85 15.11 5.55 0.08 -9.77 16 10 C -0.04 -0.47 0.73 -155.78 -0.11 -0.58 16 11 C -0.14 -1.28 8.19 37.16 0.30 -0.98 16 12 C -0.10 -1.07 5.88 -25.32 -0.15 -1.22 16 13 C -0.08 -0.85 6.76 -26.85 -0.18 -1.03 16 14 C -0.09 -0.94 6.14 -104.20 -0.64 -1.58 16 15 C -0.11 -1.09 10.04 -39.53 -0.40 -1.49 16 16 C -0.12 -1.06 10.05 -39.62 -0.40 -1.46 16 17 C -0.12 -1.14 10.05 -39.63 -0.40 -1.54 16 18 C -0.10 -0.99 9.61 -39.54 -0.38 -1.37 16 19 C -0.09 -0.98 4.87 -104.21 -0.51 -1.48 16 20 C -0.16 -3.05 6.78 -24.52 -0.17 -3.21 16 21 C 0.17 4.17 5.45 -2.53 -0.01 4.15 16 22 N -0.59 -14.67 3.13 -162.58 -0.51 -15.17 16 23 C -0.23 -6.11 9.73 -15.06 -0.15 -6.26 16 24 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 25 C 0.00 -0.12 5.47 -17.43 -0.10 -0.22 16 26 N -0.92 -26.55 10.47 55.49 0.58 -25.97 16 27 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.05 0.77 7.46 -51.93 -0.39 0.38 16 34 H 0.06 1.15 8.03 -51.93 -0.42 0.74 16 35 H 0.06 1.31 7.85 -51.93 -0.41 0.90 16 36 H 0.39 5.12 7.33 -40.82 -0.30 4.82 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.56 7.37 -51.93 -0.38 0.17 16 40 H 0.08 0.66 7.92 -51.93 -0.41 0.24 16 41 H 0.10 1.13 6.97 -51.93 -0.36 0.77 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.12 1.07 7.74 -52.49 -0.41 0.66 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 50 H 0.08 2.12 6.74 -51.93 -0.35 1.77 16 51 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 52 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 406.62 15.07 6.13 6.13 Total: -1.00 -31.03 406.62 -11.28 -42.31 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.81 Total: 5.99 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -3.47 Total: -9.56 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.18 Total: -51.87 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.03 -11.28 -42.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087844403.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.443 kcal (2) G-P(sol) polarization free energy of solvation -31.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds