Wall clock time and date at job start Wed Apr 1 2020 02:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47035 * 2 1 4 4 H 1.09000 * 109.87846 * 54.15624 * 3 2 1 5 5 C 1.54325 * 109.88553 * 292.98152 * 3 2 1 6 6 H 1.09004 * 110.71383 * 336.93157 * 5 3 2 7 7 N 1.46497 * 110.72077 * 100.02305 * 5 3 2 8 8 C 1.34770 * 120.00315 * 205.00086 * 7 5 3 9 9 O 1.21289 * 119.99854 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00495 * 179.97438 * 8 7 5 11 11 C 1.53000 * 110.26562 * 57.92867 * 10 8 7 12 12 C 1.54348 * 110.30866 * 180.02562 * 10 8 7 13 13 C 1.54343 * 102.39216 * 92.57528 * 12 10 8 14 14 C 1.51369 * 105.16815 * 26.35261 * 13 12 10 15 15 C 1.38495 * 130.39534 * 162.80825 * 14 13 12 16 16 C 1.38108 * 120.21713 * 179.97438 * 15 14 13 17 17 C 1.38255 * 119.93606 * 359.97438 * 16 15 14 18 18 C 1.38097 * 119.93167 * 359.97438 * 17 16 15 19 19 C 1.38223 * 109.75860 * 342.80681 * 14 13 12 20 20 C 1.55276 * 103.00895 * 218.47123 * 5 3 2 21 21 C 1.54906 * 101.52866 * 35.35669 * 20 5 3 22 22 N 1.47021 * 109.88457 * 175.17428 * 3 2 1 23 23 C 1.36939 * 125.64825 * 298.37996 * 22 3 2 24 24 H 1.08004 * 119.99660 * 347.97396 * 23 22 3 25 25 C 1.38811 * 120.00263 * 167.97619 * 23 22 3 26 26 N 1.31617 * 119.99790 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99961 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.46943 * 90.00111 * 27 25 23 29 29 H 1.48497 * 109.47064 * 209.99789 * 27 25 23 30 30 H 1.48498 * 109.47244 * 330.00010 * 27 25 23 31 31 H 1.09000 * 109.46937 * 185.45200 * 1 2 3 32 32 H 1.09007 * 109.46919 * 305.44888 * 1 2 3 33 33 H 1.08994 * 109.47353 * 65.44771 * 1 2 3 34 34 H 1.09003 * 109.46823 * 240.00284 * 2 1 3 35 35 H 1.08997 * 109.47208 * 119.99687 * 2 1 3 36 36 H 0.97001 * 119.99963 * 25.00867 * 7 5 3 37 37 H 1.09005 * 109.47436 * 60.70253 * 11 10 8 38 38 H 1.08997 * 109.47249 * 180.70166 * 11 10 8 39 39 H 1.08997 * 109.47196 * 300.70075 * 11 10 8 40 40 H 1.08996 * 110.82263 * 210.80549 * 12 10 8 41 41 H 1.09002 * 110.81729 * 334.35334 * 12 10 8 42 42 H 1.08997 * 110.30391 * 145.27185 * 13 12 10 43 43 H 1.08997 * 110.30909 * 267.33247 * 13 12 10 44 44 H 1.07999 * 119.89202 * 0.02562 * 15 14 13 45 45 H 1.08006 * 120.02903 * 179.97438 * 16 15 14 46 46 H 1.07998 * 120.03218 * 179.97438 * 17 16 15 47 47 H 1.07999 * 119.88828 * 180.02562 * 18 17 16 48 48 H 1.08998 * 110.95283 * 277.33281 * 20 5 3 49 49 H 1.08999 * 111.10101 * 153.45041 * 20 5 3 50 50 H 1.09000 * 110.36538 * 204.23255 * 21 20 5 51 51 H 1.09000 * 110.36564 * 82.02249 * 21 20 5 52 52 H 0.96995 * 119.99867 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9920 0.8309 5 6 1.6807 2.1263 -1.3361 6 1 1.5263 1.3843 -2.1196 7 7 0.4935 2.9708 -1.1833 8 6 -0.2792 3.2470 -2.2524 9 8 0.0081 2.7958 -3.3410 10 6 -1.5008 4.1153 -2.0952 11 6 -1.1106 5.4811 -1.5266 12 6 -2.2162 4.2842 -3.4524 13 6 -3.2485 3.1372 -3.4277 14 6 -3.5173 2.8778 -1.9608 15 6 -4.5583 2.2033 -1.3447 16 6 -4.5954 2.0903 0.0313 17 6 -3.5904 2.6516 0.7970 18 6 -2.5510 3.3236 0.1844 19 6 -2.5131 3.4398 -1.1952 20 6 2.9359 2.9900 -1.6352 21 6 4.0703 2.0872 -1.0897 22 7 3.5055 1.4548 0.1163 23 6 4.2267 0.9602 1.1701 24 1 3.7259 0.6928 2.0890 25 6 5.6012 0.8025 1.0575 26 7 6.2113 1.1280 -0.0623 27 14 6.5849 0.1285 2.4954 28 1 6.6570 -1.3514 2.3954 29 1 7.9576 0.6941 2.4644 30 1 5.9222 0.5069 3.7693 31 1 -0.3633 -1.0230 0.0976 32 1 -0.3633 0.5961 0.8372 33 1 -0.3634 0.4270 -0.9347 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.2636 3.3315 -0.3127 37 1 -0.4203 5.9755 -2.2102 38 1 -2.0042 6.0935 -1.4067 39 1 -0.6291 5.3473 -0.5580 40 1 -2.7138 5.2523 -3.5102 41 1 -1.5158 4.1574 -4.2779 42 1 -4.1654 3.4425 -3.9319 43 1 -2.8358 2.2465 -3.9013 44 1 -5.3431 1.7635 -1.9422 45 1 -5.4089 1.5640 0.5086 46 1 -3.6181 2.5645 1.8731 47 1 -1.7661 3.7614 0.7832 48 1 2.8957 3.9361 -1.0954 49 1 3.0507 3.1577 -2.7061 50 1 4.9418 2.6881 -0.8302 51 1 4.3386 1.3289 -1.8253 52 1 7.1717 1.0175 -0.1412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087844403.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:18 Heat of formation + Delta-G solvation = -13.695526 kcal Electronic energy + Delta-G solvation = -31537.944264 eV Core-core repulsion = 27694.385564 eV Total energy + Delta-G solvation = -3843.558700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.07764 -40.38308 -39.16869 -36.64729 -35.67666 -34.40957 -33.65870 -32.94762 -30.89445 -30.58726 -29.59160 -28.13898 -26.53993 -25.83632 -24.10508 -23.53275 -22.85844 -22.01221 -21.86530 -21.46168 -20.21952 -18.76757 -18.37422 -17.45825 -16.79220 -16.65367 -16.26581 -16.08363 -15.85939 -15.68217 -15.52224 -15.23656 -15.06405 -14.51917 -14.45692 -14.27642 -13.86498 -13.75878 -13.58931 -13.53201 -13.32279 -13.30419 -13.20584 -12.88594 -12.73524 -12.60567 -12.51573 -12.24281 -12.13919 -12.06687 -11.99279 -11.93014 -11.87668 -11.77394 -11.60668 -11.56484 -11.38778 -10.88195 -10.68413 -9.98615 -9.67665 -9.41094 -8.85337 -7.83911 -5.22237 0.41309 0.51836 1.47311 1.48849 1.57257 1.64182 2.12763 2.51673 2.89138 3.34781 3.40464 3.47446 3.54622 3.79562 3.82897 3.89956 3.95056 4.13173 4.17486 4.21468 4.24123 4.33506 4.38516 4.39713 4.54063 4.57771 4.62865 4.66450 4.69716 4.73943 4.74970 4.84635 4.92415 4.95312 5.00742 5.05260 5.12772 5.13155 5.14442 5.19794 5.23512 5.28559 5.33033 5.43414 5.49971 5.56693 5.59040 5.65175 5.66226 5.72407 5.74663 6.13342 6.23293 6.56029 7.09220 7.24846 7.76824 8.43370 9.26326 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.003201 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.328435 B = 8745.240383 C = 9590.374061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 C 0.161 3.839 4 H 0.051 0.949 5 C 0.157 3.843 6 H 0.072 0.928 7 N -0.697 5.697 8 C 0.529 3.471 9 O -0.577 6.577 10 C -0.034 4.034 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.082 4.082 14 C -0.102 4.102 15 C -0.120 4.120 16 C -0.117 4.117 17 C -0.125 4.125 18 C -0.104 4.104 19 C -0.101 4.101 20 C -0.140 4.140 21 C 0.180 3.820 22 N -0.612 5.612 23 C -0.231 4.231 24 H 0.083 0.917 25 C -0.063 4.063 26 N -0.950 5.950 27 Si 0.975 3.025 28 H -0.289 1.289 29 H -0.296 1.296 30 H -0.266 1.266 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.033 0.967 35 H 0.051 0.949 36 H 0.408 0.592 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.134 0.866 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.132 0.868 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.048 0.952 51 H -0.010 1.010 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.544 7.982 -0.630 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C 0.054 3.946 4 H 0.068 0.932 5 C 0.051 3.949 6 H 0.091 0.909 7 N -0.348 5.348 8 C 0.316 3.684 9 O -0.456 6.456 10 C -0.037 4.037 11 C -0.193 4.193 12 C -0.140 4.140 13 C -0.119 4.119 14 C -0.102 4.102 15 C -0.138 4.138 16 C -0.135 4.135 17 C -0.143 4.143 18 C -0.122 4.122 19 C -0.101 4.101 20 C -0.180 4.180 21 C 0.055 3.945 22 N -0.337 5.337 23 C -0.360 4.360 24 H 0.101 0.899 25 C -0.256 4.256 26 N -0.598 5.598 27 Si 0.803 3.197 28 H -0.217 1.217 29 H -0.223 1.223 30 H -0.190 1.190 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.245 0.755 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.152 0.848 45 H 0.163 0.837 46 H 0.162 0.838 47 H 0.150 0.850 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.066 0.934 51 H 0.008 0.992 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.116 7.626 -1.332 25.328 hybrid contribution 1.286 -0.672 0.692 1.608 sum -22.830 6.954 -0.640 23.874 Atomic orbital electron populations 1.21583 0.93982 1.01659 1.01349 1.21899 0.96242 0.97824 1.00502 1.21219 0.84605 0.94440 0.94341 0.93180 1.21652 0.84155 0.92028 0.97093 0.90948 1.45802 1.26033 1.51081 1.11838 1.20796 0.83841 0.80243 0.83477 1.90659 1.73429 1.54044 1.27461 1.20292 0.90791 0.95506 0.97138 1.21868 1.03108 0.93046 1.01301 1.22348 0.97239 0.99721 0.94695 1.21048 0.99929 0.98661 0.92263 1.20817 0.95324 0.97802 0.96240 1.20881 0.98165 0.99441 0.95269 1.21389 0.99402 0.99275 0.93416 1.21331 0.94141 0.97773 1.01050 1.20835 0.99301 0.99332 0.92731 1.20218 0.95762 1.00414 0.93750 1.23249 0.95548 0.98803 1.00389 1.21174 0.93927 0.92522 0.86897 1.44690 1.00585 1.69198 1.19222 1.19321 0.89789 1.34863 0.92068 0.89908 1.25667 0.98052 1.02176 0.99706 1.70140 1.08471 1.54450 1.26785 0.85131 0.77680 0.77647 0.79196 1.21663 1.22298 1.19019 0.92414 0.91646 0.93994 0.94762 0.93049 0.75545 0.91707 0.89403 0.91243 0.87972 0.90561 0.88596 0.91722 0.84826 0.83750 0.83824 0.85033 0.90651 0.91601 0.93399 0.99230 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.64 71.98 0.69 -3.04 16 2 C -0.12 -4.70 5.43 30.59 0.17 -4.53 16 3 C 0.16 6.34 2.92 45.34 0.13 6.48 16 4 H 0.05 1.85 7.72 -2.39 -0.02 1.83 16 5 C 0.16 5.69 2.09 46.22 0.10 5.78 16 6 H 0.07 2.98 7.17 -2.38 -0.02 2.96 16 7 N -0.70 -19.70 4.81 -436.72 -2.10 -21.80 16 8 C 0.53 15.29 6.53 87.66 0.57 15.86 16 9 O -0.58 -21.29 15.11 -3.06 -0.05 -21.33 16 10 C -0.03 -0.72 0.73 -53.01 -0.04 -0.76 16 11 C -0.14 -2.19 8.19 71.98 0.59 -1.60 16 12 C -0.10 -2.01 5.88 31.51 0.19 -1.83 16 13 C -0.08 -1.59 6.76 30.52 0.21 -1.38 16 14 C -0.10 -2.04 6.14 -19.59 -0.12 -2.16 16 15 C -0.12 -2.06 10.04 22.30 0.22 -1.83 16 16 C -0.12 -1.77 10.05 22.24 0.22 -1.55 16 17 C -0.13 -1.94 10.05 22.24 0.22 -1.72 16 18 C -0.10 -1.82 9.61 22.30 0.21 -1.60 16 19 C -0.10 -2.03 4.87 -19.59 -0.10 -2.12 16 20 C -0.14 -5.55 6.78 32.03 0.22 -5.33 16 21 C 0.18 9.10 5.45 86.86 0.47 9.57 16 22 N -0.61 -30.71 3.13 -668.28 -2.09 -32.80 16 23 C -0.23 -12.60 9.73 84.03 0.82 -11.78 16 24 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 25 C -0.06 -3.53 5.47 84.86 0.46 -3.07 16 26 N -0.95 -57.04 10.47 21.65 0.23 -56.81 16 27 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 28 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 29 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 30 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.04 1.28 7.46 -2.39 -0.02 1.26 16 34 H 0.03 1.41 8.03 -2.39 -0.02 1.40 16 35 H 0.05 2.05 7.85 -2.39 -0.02 2.03 16 36 H 0.41 9.57 7.33 -92.71 -0.68 8.89 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.02 7.37 -2.39 -0.02 1.00 16 40 H 0.10 1.48 7.92 -2.39 -0.02 1.46 16 41 H 0.08 1.81 6.97 -2.39 -0.02 1.79 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 46 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 47 H 0.13 1.89 7.74 -2.91 -0.02 1.87 16 48 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 49 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 50 H 0.05 2.69 6.74 -2.39 -0.02 2.67 16 51 H -0.01 -0.58 8.11 -2.39 -0.02 -0.60 16 52 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -69.47 406.62 3.48 -65.99 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.22 Total: 26.07 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.25 Total: -6.63 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -3.96 Total: -111.42 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -69.47 3.48 -65.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087844403.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.291 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds