Wall clock time and date at job start Wed Apr 1 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47005 * 2 1 4 4 H 1.09000 * 109.87390 * 55.80629 * 3 2 1 5 5 C 1.54327 * 109.88495 * 294.78698 * 3 2 1 6 6 H 1.08994 * 110.71692 * 336.77436 * 5 3 2 7 7 N 1.46496 * 110.71723 * 99.87578 * 5 3 2 8 8 C 1.34786 * 119.99670 * 205.00183 * 7 5 3 9 9 O 1.21277 * 119.99693 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99786 * 179.97438 * 8 7 5 11 11 C 1.52997 * 110.26862 * 302.07128 * 10 8 7 12 12 C 1.54346 * 110.30148 * 179.97438 * 10 8 7 13 13 C 1.54343 * 102.39260 * 267.32586 * 12 10 8 14 14 C 1.51369 * 105.16817 * 333.65388 * 13 12 10 15 15 C 1.38502 * 130.38896 * 197.17018 * 14 13 12 16 16 C 1.38095 * 120.21650 * 180.02562 * 15 14 13 17 17 C 1.38255 * 119.93324 * 359.97438 * 16 15 14 18 18 C 1.38096 * 119.93507 * 0.28638 * 17 16 15 19 19 C 1.38210 * 109.75914 * 17.18569 * 14 13 12 20 20 C 1.55157 * 102.94013 * 218.23727 * 5 3 2 21 21 C 1.54908 * 101.58724 * 35.50206 * 20 5 3 22 22 N 1.47031 * 110.01154 * 176.90233 * 3 2 1 23 23 C 1.36938 * 125.64564 * 298.46692 * 22 3 2 24 24 H 1.07997 * 120.00028 * 345.38626 * 23 22 3 25 25 C 1.38808 * 119.99612 * 165.38129 * 23 22 3 26 26 N 1.31615 * 120.00534 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 119.99789 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47051 * 60.00068 * 27 25 23 29 29 H 1.48497 * 109.47174 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47146 * 300.00410 * 27 25 23 31 31 H 1.08992 * 109.47422 * 185.58482 * 1 2 3 32 32 H 1.09004 * 109.47085 * 305.58768 * 1 2 3 33 33 H 1.09000 * 109.47157 * 65.58547 * 1 2 3 34 34 H 1.08999 * 109.46966 * 240.00459 * 2 1 3 35 35 H 1.09000 * 109.47066 * 120.00033 * 2 1 3 36 36 H 0.96997 * 120.00796 * 24.99561 * 7 5 3 37 37 H 1.09003 * 109.47665 * 297.92596 * 11 10 8 38 38 H 1.09003 * 109.47275 * 57.92834 * 11 10 8 39 39 H 1.08998 * 109.47094 * 177.92910 * 11 10 8 40 40 H 1.08998 * 110.82252 * 149.09440 * 12 10 8 41 41 H 1.09004 * 110.82012 * 25.54840 * 12 10 8 42 42 H 1.09002 * 110.29967 * 214.72950 * 13 12 10 43 43 H 1.09000 * 110.30428 * 92.57985 * 13 12 10 44 44 H 1.08003 * 119.88844 * 0.04143 * 15 14 13 45 45 H 1.08004 * 120.03588 * 179.97438 * 16 15 14 46 46 H 1.07999 * 120.02813 * 180.02562 * 17 16 15 47 47 H 1.07997 * 119.89571 * 179.72162 * 18 17 16 48 48 H 1.09001 * 111.00364 * 153.58080 * 20 5 3 49 49 H 1.08997 * 111.00623 * 277.42476 * 20 5 3 50 50 H 1.08995 * 110.36983 * 204.15403 * 21 20 5 51 51 H 1.09003 * 110.46034 * 81.87009 * 21 20 5 52 52 H 0.97000 * 120.00413 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9839 0.8479 5 6 1.6413 2.1402 -1.3176 6 1 1.4662 1.4068 -2.1046 7 7 0.4572 2.9802 -1.1215 8 6 -0.3464 3.2662 -2.1651 9 8 -0.0888 2.8286 -3.2664 10 6 -1.5648 4.1298 -1.9633 11 6 -2.4874 3.5077 -0.9133 12 6 -2.3183 4.3131 -3.2978 13 6 -1.7068 5.6197 -3.8467 14 6 -1.2394 6.3819 -2.6253 15 6 -0.9112 7.7188 -2.4731 16 6 -0.5028 8.1986 -1.2442 17 6 -0.4215 7.3424 -0.1617 18 6 -0.7432 6.0080 -0.3128 19 6 -1.1579 5.5259 -1.5433 20 6 2.8846 3.0107 -1.6398 21 6 4.0371 2.1043 -1.1398 22 7 3.5083 1.4571 0.0747 23 6 4.2602 0.9523 1.1018 24 1 3.7933 0.7124 2.0456 25 6 5.6225 0.7489 0.9298 26 7 6.1916 1.0416 -0.2202 27 14 6.6481 0.0596 2.3308 28 1 6.1306 -1.2794 2.7109 29 1 8.0628 -0.0611 1.8958 30 1 6.5662 0.9719 3.4996 31 1 -0.3634 -1.0227 0.1000 32 1 -0.3633 0.5981 0.8358 33 1 -0.3633 0.4248 -0.9358 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.2514 3.3304 -0.2407 37 1 -2.8323 2.5347 -1.2633 38 1 -1.9421 3.3848 0.0225 39 1 -3.3452 4.1603 -0.7509 40 1 -3.3884 4.4284 -3.1259 41 1 -2.1206 3.4797 -3.9720 42 1 -2.4614 6.1934 -4.3848 43 1 -0.8628 5.3972 -4.4996 44 1 -0.9751 8.3883 -3.3181 45 1 -0.2471 9.2416 -1.1289 46 1 -0.1027 7.7161 0.8002 47 1 -0.6752 5.3389 0.5322 48 1 2.9672 3.1924 -2.7114 49 1 2.8581 3.9496 -1.0869 50 1 4.9143 2.7044 -0.8985 51 1 4.2859 1.3549 -1.8913 52 1 7.1435 0.8991 -0.3405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087844404.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:23 Heat of formation + Delta-G solvation = 1.665703 kcal Electronic energy + Delta-G solvation = -31408.650248 eV Core-core repulsion = 27565.757661 eV Total energy + Delta-G solvation = -3842.892587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11180 -39.14639 -37.72493 -35.75352 -34.11483 -32.87427 -32.38615 -31.51278 -29.95047 -29.06021 -28.70489 -26.57918 -25.23904 -24.40398 -22.96191 -22.51965 -21.57175 -21.10355 -20.21958 -20.00046 -18.99939 -17.34011 -16.84522 -16.15125 -15.73375 -15.39563 -15.28362 -14.77436 -14.63328 -14.36050 -14.02244 -13.84842 -13.81158 -13.59252 -13.16331 -13.08796 -12.78950 -12.67780 -12.58513 -12.43680 -11.98131 -11.92709 -11.76412 -11.63498 -11.34197 -11.14789 -11.11513 -11.01363 -10.88244 -10.84880 -10.82150 -10.60090 -10.44183 -10.24905 -10.10096 -9.75885 -9.65735 -9.64535 -8.92100 -8.62010 -8.61266 -8.52107 -6.80287 -5.74861 -3.11379 1.17982 1.26176 2.80894 3.33086 3.39486 3.44131 3.44974 3.68466 4.19685 4.30875 4.47984 4.70189 4.72492 4.87400 4.91101 4.99836 5.12069 5.28167 5.29570 5.35679 5.37620 5.44502 5.48170 5.54476 5.56086 5.63340 5.68784 5.76272 5.81091 5.82679 5.85347 5.87868 5.92305 6.03861 6.06992 6.07723 6.24708 6.32253 6.34013 6.38113 6.42494 6.47580 6.50456 6.59078 6.70380 6.76205 6.84915 6.96162 7.16427 7.51870 7.61379 7.76540 7.79663 8.26755 8.44441 9.18322 9.79481 10.47675 11.36945 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.003218 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.810906 B = 8699.037098 C = 9424.494667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.162 3.838 4 H 0.033 0.967 5 C 0.138 3.862 6 H 0.094 0.906 7 N -0.708 5.708 8 C 0.530 3.470 9 O -0.539 6.539 10 C -0.041 4.041 11 C -0.137 4.137 12 C -0.102 4.102 13 C -0.083 4.083 14 C -0.086 4.086 15 C -0.111 4.111 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.096 4.096 19 C -0.088 4.088 20 C -0.155 4.155 21 C 0.175 3.825 22 N -0.593 5.593 23 C -0.229 4.229 24 H 0.074 0.926 25 C -0.002 4.002 26 N -0.916 5.916 27 Si 0.910 3.090 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.073 0.927 51 H 0.027 0.973 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.073 11.154 -2.733 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.050 0.950 5 C 0.033 3.967 6 H 0.112 0.888 7 N -0.357 5.357 8 C 0.315 3.685 9 O -0.416 6.416 10 C -0.044 4.044 11 C -0.194 4.194 12 C -0.140 4.140 13 C -0.120 4.120 14 C -0.086 4.086 15 C -0.129 4.129 16 C -0.133 4.133 17 C -0.138 4.138 18 C -0.114 4.114 19 C -0.089 4.089 20 C -0.195 4.195 21 C 0.050 3.950 22 N -0.318 5.318 23 C -0.357 4.357 24 H 0.092 0.908 25 C -0.199 4.199 26 N -0.562 5.562 27 Si 0.740 3.260 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.138 0.862 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.091 0.909 51 H 0.046 0.954 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.609 10.768 -3.491 21.782 hybrid contribution 0.658 -0.178 1.252 1.425 sum -17.951 10.590 -2.239 20.962 Atomic orbital electron populations 1.21765 0.97284 1.00440 1.00884 1.22008 0.93564 0.99191 1.02371 1.21068 0.87065 0.93306 0.93218 0.94959 1.22110 0.83422 0.92426 0.98692 0.88810 1.46016 1.26555 1.51915 1.11241 1.20081 0.83582 0.80219 0.84597 1.90666 1.73321 1.53200 1.24392 1.20321 0.94321 0.91807 0.97978 1.21832 0.98987 1.01133 0.97480 1.22315 0.98615 0.98536 0.94499 1.21073 1.00795 0.94833 0.95281 1.20639 0.98588 0.93536 0.95798 1.20612 1.00385 0.94256 0.97634 1.21059 0.99671 0.99776 0.92822 1.21030 1.00422 0.93305 0.99082 1.20615 0.98925 0.95700 0.96202 1.20190 1.00716 0.93910 0.94050 1.23402 0.96828 0.99024 1.00238 1.21421 0.93078 0.92879 0.87668 1.44431 0.98377 1.68279 1.20706 1.18885 0.89885 1.36102 0.90871 0.90806 1.24899 0.97203 1.00889 0.96933 1.69917 1.10648 1.52725 1.22944 0.86247 0.79433 0.79078 0.81263 1.21091 1.21599 1.21145 0.93710 0.93515 0.93308 0.92389 0.91757 0.77080 0.91484 0.91903 0.91302 0.90410 0.88658 0.90617 0.89648 0.86267 0.85912 0.85723 0.86217 0.92078 0.92134 0.90873 0.95445 0.93579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.57 37.16 0.36 -1.79 16 2 C -0.13 -2.45 5.42 -26.73 -0.14 -2.59 16 3 C 0.16 3.21 2.93 -66.95 -0.20 3.01 16 4 H 0.03 0.63 7.72 -51.93 -0.40 0.23 16 5 C 0.14 2.51 2.02 -66.10 -0.13 2.38 16 6 H 0.09 1.87 7.19 -51.93 -0.37 1.49 16 7 N -0.71 -10.49 4.75 -52.03 -0.25 -10.73 16 8 C 0.53 7.89 6.53 -10.98 -0.07 7.82 16 9 O -0.54 -9.85 15.11 5.56 0.08 -9.77 16 10 C -0.04 -0.47 0.73 -155.78 -0.11 -0.58 16 11 C -0.14 -1.25 8.20 37.16 0.30 -0.94 16 12 C -0.10 -1.07 5.88 -25.32 -0.15 -1.22 16 13 C -0.08 -0.87 6.76 -26.85 -0.18 -1.05 16 14 C -0.09 -0.98 6.14 -104.21 -0.64 -1.62 16 15 C -0.11 -1.14 10.04 -39.54 -0.40 -1.54 16 16 C -0.12 -1.12 10.05 -39.63 -0.40 -1.52 16 17 C -0.12 -1.21 10.05 -39.63 -0.40 -1.61 16 18 C -0.10 -1.04 9.61 -39.54 -0.38 -1.42 16 19 C -0.09 -1.02 4.87 -104.21 -0.51 -1.53 16 20 C -0.16 -3.11 6.77 -24.58 -0.17 -3.28 16 21 C 0.17 4.26 5.41 -2.53 -0.01 4.25 16 22 N -0.59 -14.67 3.13 -162.57 -0.51 -15.18 16 23 C -0.23 -6.19 9.75 -15.06 -0.15 -6.34 16 24 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 25 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 26 N -0.92 -26.60 10.57 55.49 0.59 -26.01 16 27 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.72 7.40 -51.93 -0.38 0.34 16 34 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 35 H 0.06 1.28 7.91 -51.93 -0.41 0.87 16 36 H 0.39 5.13 7.29 -40.82 -0.30 4.83 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.54 7.40 -51.93 -0.38 0.15 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.65 7.91 -51.93 -0.41 0.24 16 41 H 0.09 1.12 6.97 -51.93 -0.36 0.76 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.12 1.11 7.79 -52.49 -0.41 0.70 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.07 1.98 6.93 -51.93 -0.36 1.62 16 51 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 52 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -31.18 406.72 -11.28 -42.46 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.83 Total: 6.07 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -3.47 Total: -9.72 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.17 Total: -51.92 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.18 -11.28 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087844404.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.122 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds