Wall clock time and date at job start Wed Apr 1 2020 01:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46623 * 2 1 4 4 C 1.50697 * 109.46966 * 119.99597 * 2 1 3 5 5 O 1.21286 * 120.00226 * 236.25592 * 4 2 1 6 6 N 1.34774 * 120.00018 * 56.25905 * 4 2 1 7 7 C 1.48228 * 125.51892 * 185.81137 * 6 4 2 8 8 C 1.55412 * 106.41221 * 179.16593 * 7 6 4 9 9 H 1.08996 * 112.44823 * 144.60726 * 8 7 6 10 10 C 1.53092 * 106.23448 * 267.64144 * 8 7 6 11 11 C 1.52751 * 110.92501 * 164.39040 * 10 8 7 12 12 N 1.47227 * 107.70509 * 302.03613 * 11 10 8 13 13 C 1.36937 * 121.39023 * 238.31119 * 12 11 10 14 14 H 1.07997 * 119.99917 * 30.45140 * 13 12 11 15 15 C 1.38817 * 120.00281 * 210.44671 * 13 12 11 16 16 N 1.31617 * 120.00008 * 11.43411 * 15 13 12 17 17 Si 1.86799 * 120.00352 * 191.43380 * 15 13 12 18 18 H 1.48501 * 109.47019 * 59.99883 * 17 15 13 19 19 H 1.48499 * 109.47261 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46916 * 300.00249 * 17 15 13 21 21 C 1.46703 * 117.22450 * 58.33225 * 12 11 10 22 22 C 1.49639 * 111.41964 * 308.36375 * 21 12 11 23 23 H 1.08997 * 109.06567 * 167.05964 * 22 21 12 24 24 C 1.47845 * 125.65020 * 5.05623 * 6 4 2 25 25 C 1.50690 * 109.47212 * 239.99912 * 2 1 3 26 26 C 1.38240 * 119.99777 * 233.31204 * 25 2 1 27 27 C 1.38240 * 119.99616 * 179.79032 * 26 25 2 28 28 C 1.38234 * 119.99939 * 0.46318 * 27 26 25 29 29 C 1.38230 * 120.00314 * 359.76553 * 28 27 26 30 30 C 1.38232 * 119.99826 * 0.02688 * 29 28 27 31 31 H 1.09005 * 109.47460 * 292.62489 * 1 2 3 32 32 H 1.09002 * 109.47348 * 52.63008 * 1 2 3 33 33 H 1.09002 * 109.46887 * 172.62657 * 1 2 3 34 34 H 1.09009 * 109.47142 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47255 * 299.99458 * 3 2 1 36 36 H 1.09002 * 109.47945 * 59.99881 * 3 2 1 37 37 H 1.09006 * 110.64500 * 59.73402 * 7 6 4 38 38 H 1.08990 * 109.80056 * 298.14404 * 7 6 4 39 39 H 1.08998 * 109.18420 * 284.75659 * 10 8 7 40 40 H 1.08994 * 109.18559 * 44.01770 * 10 8 7 41 41 H 1.08998 * 109.81394 * 61.58651 * 11 10 8 42 42 H 1.08996 * 109.80977 * 182.48990 * 11 10 8 43 43 H 0.96998 * 120.00688 * 179.97438 * 16 15 13 44 44 H 1.09002 * 109.12080 * 68.31928 * 21 12 11 45 45 H 1.09004 * 109.12695 * 187.46825 * 21 12 11 46 46 H 1.09004 * 110.52420 * 38.04364 * 24 6 4 47 47 H 1.08994 * 110.53029 * 275.29456 * 24 6 4 48 48 H 1.07998 * 120.00204 * 0.02562 * 26 25 2 49 49 H 1.08006 * 119.99850 * 180.25307 * 27 26 25 50 50 H 1.08001 * 119.99880 * 179.78972 * 28 27 26 51 51 H 1.07997 * 120.00012 * 179.97438 * 29 28 27 52 52 H 1.08006 * 119.99963 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7845 -0.1425 1.9939 6 7 1.6457 -1.9765 1.4827 7 6 1.9636 -2.7460 2.7090 8 6 1.2861 -4.1349 2.5440 9 1 1.8769 -4.9406 2.9796 10 6 -0.0956 -4.0168 3.1926 11 6 -0.9990 -5.1725 2.7662 12 7 -1.0937 -5.1483 1.2972 13 6 -2.3011 -5.0302 0.6622 14 1 -3.1067 -4.4846 1.1310 15 6 -2.4897 -5.6115 -0.5842 16 7 -1.6001 -6.4587 -1.0566 17 14 -4.0060 -5.1914 -1.5911 18 1 -4.0274 -3.7328 -1.8686 19 1 -3.9715 -5.9394 -2.8735 20 1 -5.2248 -5.5686 -0.8311 21 6 0.1594 -5.2566 0.5420 22 6 1.1695 -4.2582 1.0133 23 1 2.1445 -4.5158 0.5998 24 6 0.8227 -2.8202 0.5900 25 6 2.0323 -0.7104 -1.2304 26 6 2.9371 -1.7484 -1.1081 27 6 3.3946 -2.4029 -2.2366 28 6 2.9547 -2.0131 -3.4877 29 6 2.0536 -0.9721 -3.6102 30 6 1.5928 -0.3204 -2.4816 31 1 -0.3634 0.3953 0.9486 32 1 -0.3634 0.6238 -0.8167 33 1 -0.3633 -1.0192 -0.1319 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9565 0.8899 37 1 1.5697 -2.2422 3.5918 38 1 3.0430 -2.8668 2.7997 39 1 0.0153 -4.0301 4.2768 40 1 -0.5533 -3.0745 2.8915 41 1 -0.5676 -6.1186 3.0931 42 1 -1.9899 -5.0470 3.2024 43 1 -1.7319 -6.8652 -1.9274 44 1 0.5707 -6.2573 0.6745 45 1 -0.0457 -5.0921 -0.5158 46 1 1.0947 -2.6525 -0.4522 47 1 -0.2374 -2.6211 0.7461 48 1 3.2836 -2.0505 -0.1309 49 1 4.0984 -3.2166 -2.1408 50 1 3.3147 -2.5222 -4.3695 51 1 1.7102 -0.6673 -4.5878 52 1 0.8891 0.4933 -2.5773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088193887.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:30 Heat of formation + Delta-G solvation = 5.324700 kcal Electronic energy + Delta-G solvation = -32552.955491 eV Core-core repulsion = 28710.221570 eV Total energy + Delta-G solvation = -3842.733921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.22196 -40.35468 -39.40663 -36.86714 -36.21184 -34.32669 -32.42020 -32.25452 -31.73145 -30.73282 -29.10261 -28.05353 -27.33046 -25.92371 -24.41774 -23.49626 -23.29765 -22.90538 -21.76450 -20.08014 -19.77474 -18.80771 -18.38924 -17.42053 -17.05709 -16.78405 -16.31784 -16.15481 -15.71923 -15.42386 -15.26143 -15.16807 -14.81330 -14.68170 -14.63669 -14.48575 -14.22999 -13.93601 -13.72188 -13.59744 -13.39372 -13.18357 -13.04067 -12.95100 -12.81647 -12.77030 -12.69239 -12.46298 -12.28035 -12.24586 -12.06400 -11.98722 -11.88271 -11.66937 -11.64235 -11.02483 -11.01706 -10.76571 -10.50590 -9.80412 -9.67301 -9.56012 -8.56561 -7.82001 -5.30345 0.41048 0.49223 1.49869 1.50572 1.51411 1.56973 1.94374 2.53958 2.85401 3.25774 3.36101 3.55684 3.64632 3.69696 3.71810 3.91229 3.97377 4.05610 4.08692 4.16817 4.26748 4.29740 4.40688 4.52028 4.56791 4.61737 4.62883 4.65446 4.70004 4.71952 4.80325 4.83571 4.86697 4.90021 4.98661 5.06739 5.08347 5.13063 5.13735 5.16043 5.18298 5.22301 5.28092 5.33104 5.40679 5.56900 5.59887 5.61199 5.62824 5.68590 5.78687 6.08799 6.44961 6.47780 7.05660 7.21256 7.90157 8.46527 9.24051 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.005087 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.547160 B = 5503.156117 C = 6823.537677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.035 4.035 3 C -0.116 4.116 4 C 0.537 3.463 5 O -0.580 6.580 6 N -0.610 5.610 7 C 0.113 3.887 8 C -0.078 4.078 9 H 0.106 0.894 10 C -0.115 4.115 11 C 0.138 3.862 12 N -0.603 5.603 13 C -0.254 4.254 14 H 0.062 0.938 15 C -0.040 4.040 16 N -0.932 5.932 17 Si 0.956 3.044 18 H -0.276 1.276 19 H -0.296 1.296 20 H -0.279 1.279 21 C 0.195 3.805 22 C -0.106 4.106 23 H 0.070 0.930 24 C 0.123 3.877 25 C -0.081 4.081 26 C -0.131 4.131 27 C -0.126 4.126 28 C -0.125 4.125 29 C -0.120 4.120 30 C -0.113 4.113 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.022 0.978 42 H 0.053 0.947 43 H 0.249 0.751 44 H -0.004 1.004 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.130 0.870 50 H 0.142 0.858 51 H 0.148 0.852 52 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 11.583 -1.286 14.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.038 4.038 3 C -0.173 4.173 4 C 0.327 3.673 5 O -0.461 6.461 6 N -0.342 5.342 7 C -0.009 4.009 8 C -0.097 4.097 9 H 0.124 0.876 10 C -0.154 4.154 11 C 0.013 3.987 12 N -0.326 5.326 13 C -0.384 4.384 14 H 0.080 0.920 15 C -0.236 4.236 16 N -0.578 5.578 17 Si 0.785 3.215 18 H -0.202 1.202 19 H -0.222 1.222 20 H -0.205 1.205 21 C 0.068 3.932 22 C -0.127 4.127 23 H 0.088 0.912 24 C 0.001 3.999 25 C -0.082 4.082 26 C -0.149 4.149 27 C -0.144 4.144 28 C -0.143 4.143 29 C -0.138 4.138 30 C -0.131 4.131 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.014 0.986 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.123 0.877 49 H 0.148 0.852 50 H 0.159 0.841 51 H 0.166 0.834 52 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.406 11.871 -1.036 14.582 hybrid contribution -0.740 -0.478 -0.433 0.981 sum 7.666 11.393 -1.469 13.811 Atomic orbital electron populations 1.22035 0.90965 1.03515 1.03574 1.19768 0.97846 0.96695 0.89467 1.21643 1.01034 0.91521 1.03139 1.20495 0.79586 0.80023 0.87245 1.90639 1.37580 1.66527 1.51309 1.48979 1.52013 1.12623 1.20611 1.22537 0.99838 0.91495 0.87066 1.22136 0.96820 0.95714 0.95047 0.87588 1.21894 0.94716 0.98944 0.99873 1.21038 0.97695 0.95548 0.84424 1.44145 1.02159 1.85665 1.00669 1.19314 0.91417 1.26381 1.01329 0.92006 1.25738 1.00130 0.96832 1.00935 1.70106 1.37522 1.31037 1.19136 0.85513 0.80231 0.77824 0.77928 1.20173 1.22183 1.20535 1.19506 0.84373 0.92765 0.96520 1.21739 0.99709 0.95046 0.96168 0.91157 1.22357 0.94429 0.89082 0.94057 1.19534 0.97875 0.96592 0.94161 1.21190 0.98058 0.96777 0.98903 1.21312 1.00485 0.99947 0.92671 1.21471 0.97687 0.97435 0.97706 1.21467 0.97009 0.95898 0.99427 1.21168 1.00102 1.00723 0.91066 0.92054 0.88857 0.92392 0.93143 0.89272 0.92035 0.91082 0.91453 0.90165 0.93489 0.95999 0.92887 0.94171 0.98627 0.92290 0.90215 0.92013 0.87650 0.85169 0.84055 0.83449 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 7.77 71.98 0.56 -3.00 16 2 C -0.03 -0.92 0.59 -53.68 -0.03 -0.95 16 3 C -0.12 -2.68 7.64 71.98 0.55 -2.13 16 4 C 0.54 17.28 5.11 87.66 0.45 17.73 16 5 O -0.58 -21.78 16.32 -3.05 -0.05 -21.83 16 6 N -0.61 -19.08 2.54 -807.53 -2.05 -21.13 16 7 C 0.11 3.25 6.28 86.88 0.55 3.79 16 8 C -0.08 -2.33 3.58 -9.59 -0.03 -2.36 16 9 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 10 C -0.12 -3.60 4.79 30.54 0.15 -3.45 16 11 C 0.14 5.35 6.52 86.16 0.56 5.91 16 12 N -0.60 -28.24 2.89 -706.37 -2.04 -30.28 16 13 C -0.25 -13.23 9.67 84.03 0.81 -12.42 16 14 H 0.06 3.17 7.85 -2.91 -0.02 3.15 16 15 C -0.04 -2.16 5.05 84.86 0.43 -1.73 16 16 N -0.93 -52.67 11.09 21.65 0.24 -52.43 16 17 Si 0.96 43.09 29.57 68.60 2.03 45.12 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 C 0.19 8.73 4.60 85.26 0.39 9.13 16 22 C -0.11 -3.70 2.78 -11.24 -0.03 -3.73 16 23 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 24 C 0.12 4.13 3.43 86.41 0.30 4.43 16 25 C -0.08 -2.13 3.50 -19.87 -0.07 -2.20 16 26 C -0.13 -3.70 6.74 22.27 0.15 -3.54 16 27 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 28 C -0.13 -2.76 10.05 22.27 0.22 -2.53 16 29 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 30 C -0.11 -2.50 8.82 22.27 0.20 -2.30 16 31 H 0.06 1.51 8.13 -2.38 -0.02 1.49 16 32 H 0.09 1.80 7.35 -2.39 -0.02 1.78 16 33 H 0.06 1.68 5.11 -2.39 -0.01 1.67 16 34 H 0.05 1.28 8.06 -2.38 -0.02 1.27 16 35 H 0.09 1.55 7.80 -2.39 -0.02 1.53 16 36 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 37 H 0.07 2.00 7.73 -2.38 -0.02 1.99 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 1.60 7.13 -2.39 -0.02 1.58 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 2.04 7.96 -2.39 -0.02 2.02 16 43 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 44 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.06 3.03 6.12 -2.38 -0.01 3.02 16 46 H 0.08 2.74 4.50 -2.39 -0.01 2.73 16 47 H 0.06 2.38 6.37 -2.39 -0.02 2.36 16 48 H 0.11 3.27 5.81 -2.91 -0.02 3.26 16 49 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 50 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 51 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 52 H 0.14 2.47 7.23 -2.91 -0.02 2.45 16 Total: -1.00 -63.63 387.37 4.62 -59.01 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.90 Total: 26.11 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 5.59 Total: -4.58 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -3.85 Total: -103.84 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -63.63 4.62 -59.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088193887.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.333 kcal (2) G-P(sol) polarization free energy of solvation -63.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds