Wall clock time and date at job start Wed Apr 1 2020 02:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 F 1.39900 * 109.47010 * 239.99843 * 2 1 3 5 5 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 6 6 O 1.21281 * 119.99816 * 249.99872 * 5 2 1 7 7 N 1.34777 * 120.00101 * 69.99430 * 5 2 1 8 8 C 1.46922 * 120.62742 * 359.72662 * 7 5 2 9 9 C 1.53625 * 108.54460 * 126.36799 * 8 7 5 10 10 C 1.53046 * 109.24153 * 54.84800 * 9 8 7 11 11 C 1.53005 * 109.44852 * 178.49952 * 10 9 8 12 12 O 1.42898 * 109.47163 * 295.06580 * 11 10 9 13 13 C 1.42896 * 114.00007 * 179.97438 * 12 11 10 14 14 H 1.08996 * 110.64269 * 333.14202 * 13 12 11 15 15 C 1.55161 * 110.72193 * 209.99648 * 13 12 11 16 16 C 1.54910 * 101.58309 * 206.13502 * 15 13 12 17 17 N 1.47423 * 104.83128 * 37.01186 * 16 15 13 18 18 C 1.36936 * 125.64755 * 155.83107 * 17 16 15 19 19 H 1.08003 * 120.00095 * 180.02562 * 18 17 16 20 20 C 1.38807 * 119.99993 * 0.03169 * 18 17 16 21 21 N 1.31620 * 120.00020 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00050 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46995 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47021 * 119.99684 * 22 20 18 25 25 H 1.48497 * 109.47100 * 239.99548 * 22 20 18 26 26 C 1.47020 * 108.70444 * 335.86877 * 17 16 15 27 27 C 1.53033 * 109.54109 * 298.51588 * 10 9 8 28 28 C 1.46922 * 120.62930 * 180.02562 * 7 5 2 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.09004 * 109.58868 * 246.19537 * 8 7 5 36 36 H 1.08999 * 109.59497 * 6.62338 * 8 7 5 37 37 H 1.08997 * 109.63332 * 294.86454 * 9 8 7 38 38 H 1.09002 * 109.46221 * 174.73658 * 9 8 7 39 39 H 1.09004 * 109.45472 * 58.53821 * 10 9 8 40 40 H 1.09000 * 109.47065 * 55.06040 * 11 10 9 41 41 H 1.08991 * 109.46743 * 175.06602 * 11 10 9 42 42 H 1.09000 * 111.00290 * 324.21097 * 15 13 12 43 43 H 1.09004 * 111.00098 * 88.05843 * 15 13 12 44 44 H 1.08998 * 110.36606 * 155.85076 * 16 15 13 45 45 H 1.08994 * 110.36542 * 278.17081 * 16 15 13 46 46 H 0.97006 * 120.00119 * 180.02562 * 21 20 18 47 47 H 1.08995 * 109.88479 * 241.64399 * 26 17 16 48 48 H 1.09006 * 109.88425 * 120.47505 * 26 17 16 49 49 H 1.09005 * 109.49777 * 301.41105 * 27 10 9 50 50 H 1.08999 * 109.49867 * 181.31398 * 27 10 9 51 51 H 1.09000 * 109.58598 * 353.37124 * 28 7 5 52 52 H 1.08998 * 109.58835 * 113.80447 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7105 1.2305 6 8 2.5732 -0.0818 2.1154 7 7 1.8805 -2.0446 1.3475 8 6 1.2220 -2.8189 0.2867 9 6 2.1556 -3.9643 -0.1335 10 6 2.5338 -4.7855 1.1014 11 6 3.4337 -5.9500 0.6827 12 8 2.6980 -6.8428 -0.1562 13 6 3.4509 -7.9710 -0.6057 14 1 4.5143 -7.7343 -0.6404 15 6 2.9491 -8.4480 -1.9943 16 6 3.3467 -9.9450 -1.9714 17 7 3.1178 -10.3750 -0.5800 18 6 2.8774 -11.6595 -0.1710 19 1 2.7212 -11.8726 0.8762 20 6 2.8345 -12.6879 -1.1023 21 7 3.0245 -12.4283 -2.3786 22 14 2.5073 -14.4404 -0.5443 23 1 2.3295 -14.4654 0.9298 24 1 1.2752 -14.9470 -1.2006 25 1 3.6574 -15.3020 -0.9184 26 6 3.1895 -9.1962 0.2956 27 6 3.2809 -3.8966 2.0981 28 6 2.3646 -2.7511 2.5413 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 0.2836 -3.2276 0.6614 36 1 1.0257 -2.1731 -0.5691 37 1 3.0575 -3.5538 -0.5875 38 1 1.6446 -4.6038 -0.8533 39 1 1.6296 -5.1752 1.5691 40 1 4.2951 -5.5654 0.1368 41 1 3.7743 -6.4831 1.5703 42 1 1.8687 -8.3319 -2.0802 43 1 3.4623 -7.9196 -2.7978 44 1 2.7162 -10.5154 -2.6534 45 1 4.3973 -10.0625 -2.2369 46 1 2.9942 -13.1469 -3.0295 47 1 4.0058 -9.3129 1.0084 48 1 2.2459 -9.0710 0.8268 49 1 4.1723 -3.4867 1.6230 50 1 3.5704 -4.4877 2.9669 51 1 2.9225 -2.0605 3.1735 52 1 1.5173 -3.1545 3.0958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088227891.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:40 Heat of formation + Delta-G solvation = -125.324289 kcal Electronic energy + Delta-G solvation = -30915.946405 eV Core-core repulsion = 26636.777894 eV Total energy + Delta-G solvation = -4279.168511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.15018 -41.30262 -40.00388 -38.85808 -37.36718 -34.98578 -34.52262 -33.82947 -32.07834 -31.10915 -29.16451 -28.51654 -28.25878 -26.37000 -25.27368 -24.40714 -23.11218 -22.07657 -21.83744 -21.32492 -20.20462 -18.98344 -18.67979 -17.88318 -17.58497 -17.05674 -16.77818 -16.49490 -16.28846 -16.13403 -15.67018 -15.61963 -15.49754 -15.18543 -14.74050 -14.50421 -14.27934 -14.15876 -13.92294 -13.84036 -13.59198 -13.46822 -13.37694 -13.20875 -13.15635 -13.03464 -12.95145 -12.92142 -12.68140 -12.43004 -12.27506 -12.23641 -12.01190 -11.98586 -11.82286 -11.65325 -11.56684 -11.42941 -11.28491 -10.77714 -10.75511 -10.42076 -9.79983 -8.92108 -7.79389 -5.24714 1.26010 1.46537 1.47735 1.58231 1.77352 2.45943 2.65908 3.01565 3.31081 3.39890 3.55552 3.67281 3.69904 3.71098 3.80368 3.86533 3.93525 4.05680 4.11216 4.18789 4.28646 4.33060 4.42814 4.50688 4.56701 4.59124 4.65021 4.66126 4.67627 4.76980 4.77600 4.82313 4.84082 4.89275 4.96082 4.99979 5.02112 5.03429 5.05947 5.07590 5.12166 5.20404 5.39940 5.44261 5.46687 5.60352 5.77376 6.18312 6.27251 6.37334 6.85312 7.08449 7.74807 8.38332 9.22826 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.028442 B = 0.001895 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.223168 B =14772.201302 C =15228.589019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 C -0.156 4.156 4 F -0.197 7.197 5 C 0.495 3.505 6 O -0.564 6.564 7 N -0.598 5.598 8 C 0.089 3.911 9 C -0.120 4.120 10 C -0.079 4.079 11 C 0.061 3.939 12 O -0.381 6.381 13 C 0.095 3.905 14 H 0.079 0.921 15 C -0.125 4.125 16 C 0.153 3.847 17 N -0.626 5.626 18 C -0.240 4.240 19 H 0.080 0.920 20 C -0.068 4.068 21 N -0.949 5.949 22 Si 0.983 3.017 23 H -0.267 1.267 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.115 3.885 27 C -0.120 4.120 28 C 0.110 3.890 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.077 0.923 45 H -0.006 1.006 46 H 0.249 0.751 47 H 0.024 0.976 48 H 0.027 0.973 49 H 0.062 0.938 50 H 0.093 0.907 51 H 0.084 0.916 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 28.242 5.475 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.079 3.921 3 C -0.214 4.214 4 F -0.178 7.178 5 C 0.282 3.718 6 O -0.443 6.443 7 N -0.330 5.330 8 C -0.032 4.032 9 C -0.159 4.159 10 C -0.098 4.098 11 C -0.016 4.016 12 O -0.300 6.300 13 C 0.036 3.964 14 H 0.097 0.903 15 C -0.163 4.163 16 C 0.028 3.972 17 N -0.353 5.353 18 C -0.369 4.369 19 H 0.098 0.902 20 C -0.261 4.261 21 N -0.599 5.599 22 Si 0.811 3.189 23 H -0.192 1.192 24 H -0.216 1.216 25 H -0.218 1.218 26 C -0.011 4.011 27 C -0.158 4.158 28 C -0.012 4.012 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.012 0.988 46 H 0.058 0.942 47 H 0.042 0.958 48 H 0.045 0.955 49 H 0.081 0.919 50 H 0.111 0.889 51 H 0.102 0.898 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.580 28.388 5.816 29.337 hybrid contribution 0.539 -1.483 0.148 1.585 sum -4.041 26.905 5.964 27.853 Atomic orbital electron populations 1.22545 0.89133 1.05416 1.06094 1.21316 0.98161 0.93400 0.79266 1.22182 1.02246 0.91809 1.05154 1.92842 1.90472 1.82327 1.52159 1.21301 0.78881 0.82686 0.88966 1.90692 1.44277 1.66208 1.43131 1.48273 1.57474 1.06293 1.20930 1.22458 0.95770 0.94087 0.90908 1.21903 1.00002 0.96327 0.97624 1.21089 0.99056 0.93347 0.96307 1.22716 0.94665 0.90490 0.93708 1.87881 1.39525 1.34818 1.67756 1.22905 0.95019 0.84685 0.93750 0.90345 1.22961 1.01389 0.96266 0.95698 1.21748 0.97070 0.91096 0.87247 1.44717 1.83895 1.02947 1.03741 1.19490 1.40649 0.83470 0.93315 0.90233 1.25681 1.02495 1.02216 0.95665 1.70038 1.57515 1.31275 1.01031 0.84936 0.76937 0.79183 0.77805 1.19165 1.21612 1.21767 1.21834 0.97988 0.87688 0.93565 1.21844 0.98127 0.96101 0.99724 1.21717 0.98766 0.93937 0.86791 0.88017 0.89273 0.89984 0.89578 0.92301 0.88409 0.89394 0.87183 0.92250 0.89995 0.89929 0.92919 0.93056 0.91602 0.89217 0.90459 0.98789 0.94162 0.95823 0.95489 0.91946 0.88868 0.89765 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 8.60 71.98 0.62 -0.87 16 2 C 0.10 1.44 1.20 -11.54 -0.01 1.43 16 3 C -0.16 -1.98 8.28 71.98 0.60 -1.38 16 4 F -0.20 -3.35 14.35 44.97 0.65 -2.71 16 5 C 0.49 9.74 6.77 87.66 0.59 10.34 16 6 O -0.56 -14.61 15.39 -3.03 -0.05 -14.65 16 7 N -0.60 -10.22 2.97 -817.99 -2.43 -12.64 16 8 C 0.09 1.29 4.91 86.51 0.42 1.71 16 9 C -0.12 -2.13 5.29 30.82 0.16 -1.97 16 10 C -0.08 -1.44 2.39 -10.77 -0.03 -1.47 16 11 C 0.06 1.39 5.15 71.98 0.37 1.76 16 12 O -0.38 -11.57 9.58 -148.98 -1.43 -12.99 16 13 C 0.09 3.33 3.45 31.79 0.11 3.44 16 14 H 0.08 2.51 7.82 -2.39 -0.02 2.49 16 15 C -0.12 -4.78 6.81 31.99 0.22 -4.56 16 16 C 0.15 7.68 5.89 86.86 0.51 8.20 16 17 N -0.63 -33.27 3.39 -692.00 -2.35 -35.62 16 18 C -0.24 -13.78 10.27 84.03 0.86 -12.91 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 20 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 21 N -0.95 -56.88 10.09 21.65 0.22 -56.66 16 22 Si 0.98 45.94 29.55 68.60 2.03 47.96 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 26 C 0.11 4.94 7.02 86.73 0.61 5.55 16 27 C -0.12 -1.86 5.36 30.68 0.16 -1.70 16 28 C 0.11 1.75 6.43 86.38 0.56 2.30 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.65 5.97 -2.38 -0.01 0.63 16 32 H 0.09 1.06 7.99 -2.39 -0.02 1.04 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.11 1.48 3.85 -2.39 -0.01 1.47 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.60 7.79 -2.39 -0.02 1.58 16 39 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.05 1.14 8.11 -2.39 -0.02 1.12 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 44 H 0.08 4.40 5.87 -2.39 -0.01 4.38 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 46 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 47 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.03 1.19 8.06 -2.38 -0.02 1.17 16 49 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 50 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.08 1.55 7.00 -2.39 -0.02 1.53 16 52 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -70.76 400.68 3.75 -67.01 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.89 Total: 13.88 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 6.22 Total: 6.42 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -4.56 Total: -104.92 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.47 Total: -27.65 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.65 Total: -2.71 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -70.76 3.75 -67.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088227891.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.315 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds