Wall clock time and date at job start Wed Apr 1 2020 02:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47423 * 2 1 4 4 H 1.08999 * 109.47160 * 54.99722 * 3 2 1 5 5 F 1.39902 * 109.47008 * 294.99523 * 3 2 1 6 6 C 1.50703 * 109.47088 * 174.99726 * 3 2 1 7 7 O 1.21271 * 119.99963 * 43.47804 * 6 3 2 8 8 N 1.34780 * 119.99773 * 223.47505 * 6 3 2 9 9 C 1.46923 * 120.63329 * 4.11911 * 8 6 3 10 10 C 1.52760 * 109.00713 * 233.58540 * 9 8 6 11 11 C 1.53043 * 109.38033 * 305.58523 * 10 9 8 12 12 C 1.52999 * 109.45747 * 181.26315 * 11 10 9 13 13 O 1.42904 * 109.47434 * 64.93067 * 12 11 10 14 14 C 1.42901 * 114.00322 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.88130 * 26.12239 * 14 13 12 16 16 C 1.55153 * 111.00220 * 150.00077 * 14 13 12 17 17 C 1.54320 * 102.94101 * 153.57950 * 16 14 13 18 18 N 1.47024 * 107.27388 * 337.80780 * 17 16 14 19 19 C 1.36938 * 125.65123 * 178.96133 * 18 17 16 20 20 H 1.07996 * 119.99834 * 185.07853 * 19 18 17 21 21 C 1.38813 * 119.99717 * 5.08438 * 19 18 17 22 22 N 1.31614 * 120.00087 * 354.82150 * 21 19 18 23 23 Si 1.86801 * 119.99481 * 174.82060 * 21 19 18 24 24 H 1.48496 * 109.47023 * 94.99942 * 23 21 19 25 25 H 1.48505 * 109.46798 * 214.99467 * 23 21 19 26 26 H 1.48490 * 109.47489 * 334.99686 * 23 21 19 27 27 C 1.47426 * 108.69950 * 358.94143 * 18 17 16 28 28 C 1.53034 * 109.53596 * 61.24472 * 11 10 9 29 29 C 1.46926 * 120.62788 * 184.39591 * 8 6 3 30 30 H 1.09006 * 109.46878 * 59.99716 * 1 2 3 31 31 H 1.08996 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47100 * 300.00674 * 1 2 3 33 33 H 1.08997 * 109.47100 * 239.99326 * 2 1 3 34 34 H 1.09000 * 109.46459 * 120.00138 * 2 1 3 35 35 H 1.08999 * 109.58402 * 353.41498 * 9 8 6 36 36 H 1.09001 * 109.58865 * 113.83735 * 9 8 6 37 37 H 1.09001 * 109.56011 * 185.55356 * 10 9 8 38 38 H 1.08997 * 109.36465 * 65.49571 * 10 9 8 39 39 H 1.08997 * 109.45792 * 301.22077 * 11 10 9 40 40 H 1.09002 * 109.47039 * 184.92840 * 12 11 10 41 41 H 1.09001 * 109.47494 * 304.93178 * 12 11 10 42 42 H 1.09000 * 110.71986 * 271.94435 * 16 14 13 43 43 H 1.09000 * 110.72259 * 35.04183 * 16 14 13 44 44 H 1.09000 * 109.88399 * 97.22551 * 17 16 14 45 45 H 1.09003 * 109.88626 * 218.23474 * 17 16 14 46 46 H 0.97009 * 119.99891 * 180.02562 * 22 21 19 47 47 H 1.09003 * 110.36639 * 265.29273 * 27 18 17 48 48 H 1.08993 * 110.36751 * 142.97072 * 27 18 17 49 49 H 1.09002 * 109.49654 * 178.68314 * 28 11 10 50 50 H 1.08997 * 109.52708 * 58.60126 * 28 11 10 51 51 H 1.09003 * 109.58847 * 246.15920 * 29 8 6 52 52 H 1.09004 * 109.58623 * 6.58336 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 9 1.6701 2.0679 -1.1955 6 6 3.5420 1.4441 0.1239 7 8 4.2048 0.6620 -0.5240 8 7 4.1486 2.3149 0.9547 9 6 3.3566 3.2067 1.8127 10 6 3.8064 4.6482 1.5815 11 6 5.3184 4.7490 1.7955 12 6 5.7661 6.1982 1.5953 13 8 5.1837 7.0210 2.6082 14 6 5.5405 8.4014 2.5121 15 1 5.7920 8.6672 1.4853 16 6 4.4068 9.3082 3.0595 17 6 5.1648 10.5738 3.5126 18 7 6.5646 10.1862 3.7401 19 6 7.5718 11.0267 4.1329 20 1 8.5864 10.6620 4.1943 21 6 7.2884 12.3476 4.4524 22 7 6.0720 12.8198 4.2806 23 14 8.6338 13.4547 5.1261 24 1 9.2437 14.2258 4.0132 25 1 8.0514 14.3939 6.1181 26 1 9.6755 12.6247 5.7824 27 6 6.7043 8.7426 3.4758 28 6 6.0388 3.8491 0.7890 29 6 5.6145 2.3946 1.0152 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 2.3000 3.1106 1.5629 36 1 3.5126 2.9413 2.8583 37 1 3.2949 5.3071 2.2833 38 1 3.5630 4.9435 0.5609 39 1 5.5638 4.4300 2.8085 40 1 6.8526 6.2553 1.6611 41 1 5.4427 6.5462 0.6142 42 1 3.6911 9.5481 2.2731 43 1 3.9059 8.8328 3.9028 44 1 5.1128 11.3355 2.7346 45 1 4.7290 10.9565 4.4355 46 1 5.8741 13.7429 4.5035 47 1 6.6081 8.1762 4.4021 48 1 7.6632 8.5349 3.0011 49 1 7.1164 3.9392 0.9265 50 1 5.7749 4.1517 -0.2244 51 1 5.9584 2.0617 1.9945 52 1 6.0471 1.7628 0.2395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088235881.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:14 Heat of formation + Delta-G solvation = -112.602884 kcal Electronic energy + Delta-G solvation = -30381.679253 eV Core-core repulsion = 26103.062384 eV Total energy + Delta-G solvation = -4278.616870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.28553 -40.59527 -38.71890 -37.74226 -35.93643 -34.54224 -33.68261 -32.12304 -31.61199 -29.29822 -28.64696 -27.47039 -26.68151 -24.39297 -23.81208 -23.51565 -22.25222 -20.85738 -20.29631 -20.06327 -19.49947 -18.30494 -17.12311 -16.97508 -16.56714 -16.42407 -15.91032 -15.38927 -15.07108 -14.95481 -14.78223 -14.60325 -14.29900 -14.22025 -13.89952 -13.71610 -13.41133 -13.37852 -13.09076 -12.76282 -12.71709 -12.61526 -12.33371 -12.25468 -12.00800 -11.70601 -11.63831 -11.56922 -11.27710 -11.22550 -10.98345 -10.92916 -10.83790 -10.73187 -10.65299 -10.21757 -10.10312 -10.02705 -9.80534 -9.72032 -9.12459 -9.07917 -8.59950 -6.84951 -5.73753 -3.07117 1.96831 2.38371 3.38839 3.44157 3.46438 3.70987 3.77721 3.95857 3.99254 4.35515 4.42000 4.48800 4.50401 4.64456 4.73910 4.84628 4.90185 4.93604 5.00282 5.11724 5.16477 5.29578 5.33974 5.35426 5.41066 5.42678 5.46149 5.52885 5.57635 5.59894 5.64017 5.65782 5.72269 5.73266 5.75458 5.83260 5.87342 6.07910 6.13354 6.26111 6.45839 6.51980 6.67024 6.71134 6.83122 7.52806 7.56823 7.60467 7.60806 7.80765 8.23814 9.19678 9.80018 10.45949 11.38224 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.029420 B = 0.001771 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.517651 B =15807.889363 C =16424.965491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.075 3.925 4 H 0.106 0.894 5 F -0.188 7.188 6 C 0.495 3.505 7 O -0.524 6.524 8 N -0.603 5.603 9 C 0.098 3.902 10 C -0.128 4.128 11 C -0.085 4.085 12 C 0.067 3.933 13 O -0.378 6.378 14 C 0.073 3.927 15 H 0.065 0.935 16 C -0.139 4.139 17 C 0.178 3.822 18 N -0.604 5.604 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.121 3.879 28 C -0.129 4.129 29 C 0.112 3.888 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.253 0.747 47 H 0.027 0.973 48 H 0.035 0.965 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.073 0.927 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 -24.887 -7.144 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.036 3.964 4 H 0.124 0.876 5 F -0.169 7.169 6 C 0.280 3.720 7 O -0.400 6.400 8 N -0.337 5.337 9 C -0.024 4.024 10 C -0.166 4.166 11 C -0.103 4.103 12 C -0.010 4.010 13 O -0.297 6.297 14 C 0.015 3.985 15 H 0.083 0.917 16 C -0.177 4.177 17 C 0.053 3.947 18 N -0.332 5.332 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.006 4.006 28 C -0.168 4.168 29 C -0.010 4.010 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.100 0.900 50 H 0.088 0.912 51 H 0.091 0.909 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.510 -25.143 -7.309 27.857 hybrid contribution 0.880 0.993 0.130 1.333 sum -8.630 -24.150 -7.179 26.631 Atomic orbital electron populations 1.21782 0.93988 1.02742 1.02639 1.21993 0.97396 0.93463 1.05007 1.21820 0.92145 0.96479 0.85947 0.87621 1.92894 1.91973 1.83887 1.48140 1.20964 0.90455 0.80840 0.79724 1.90717 1.66183 1.38547 1.44534 1.48237 1.07631 1.37211 1.40605 1.21955 0.95464 0.90210 0.94774 1.21866 0.96251 0.95169 1.03328 1.21110 0.95121 0.93834 1.00270 1.22464 0.97126 0.90099 0.91278 1.87837 1.71484 1.18769 1.51567 1.23405 0.96775 0.79687 0.98643 0.91685 1.22991 0.97002 0.97441 1.00268 1.21160 0.83073 0.90681 0.99762 1.44355 1.06255 1.02185 1.80414 1.19061 0.87902 0.90930 1.37849 0.90418 1.24830 0.96855 0.97158 1.01577 1.69966 1.18519 1.14890 1.53475 0.86100 0.80654 0.80455 0.78564 1.21665 1.21590 1.20618 1.21875 0.95388 0.87319 0.96012 1.21923 1.00911 0.93976 0.99956 1.21662 0.78873 0.97302 1.03119 0.91840 0.91626 0.92229 0.89470 0.89826 0.89517 0.90319 0.88976 0.91407 0.89865 0.93300 0.93677 0.92005 0.91505 0.93786 0.93287 0.93709 0.95482 0.94640 0.90004 0.91174 0.90880 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.83 37.16 0.37 -0.41 16 2 C -0.14 -0.92 5.39 -26.73 -0.14 -1.07 16 3 C 0.08 0.58 3.38 -27.88 -0.09 0.49 16 4 H 0.11 0.53 5.37 -51.93 -0.28 0.25 16 5 F -0.19 -1.91 16.75 2.25 0.04 -1.87 16 6 C 0.49 4.98 7.05 -10.98 -0.08 4.90 16 7 O -0.52 -7.06 16.00 5.56 0.09 -6.97 16 8 N -0.60 -5.10 2.98 -173.03 -0.52 -5.62 16 9 C 0.10 0.64 6.29 -3.93 -0.02 0.62 16 10 C -0.13 -1.06 5.25 -26.83 -0.14 -1.21 16 11 C -0.08 -0.78 2.39 -90.58 -0.22 -0.99 16 12 C 0.07 0.80 5.15 37.16 0.19 0.99 16 13 O -0.38 -5.78 9.66 -35.23 -0.34 -6.12 16 14 C 0.07 1.31 3.54 -24.59 -0.09 1.23 16 15 H 0.07 1.14 7.83 -51.93 -0.41 0.73 16 16 C -0.14 -2.64 6.69 -24.90 -0.17 -2.80 16 17 C 0.18 4.34 5.38 -3.07 -0.02 4.33 16 18 N -0.60 -15.66 3.39 -170.08 -0.58 -16.23 16 19 C -0.23 -6.44 10.27 -15.06 -0.15 -6.60 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 22 N -0.92 -27.07 10.34 55.49 0.57 -26.50 16 23 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.12 2.56 6.97 -2.53 -0.02 2.54 16 28 C -0.13 -1.04 5.36 -26.61 -0.14 -1.18 16 29 C 0.11 0.92 6.42 -3.71 -0.02 0.89 16 30 H 0.06 0.36 7.94 -51.93 -0.41 -0.05 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.70 8.04 -51.93 -0.42 0.28 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.42 5.16 -51.93 -0.27 0.15 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.83 7.79 -51.93 -0.40 0.43 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.04 1.17 7.53 -51.93 -0.39 0.78 16 45 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.09 0.87 7.03 -51.93 -0.37 0.51 16 LS Contribution 407.16 15.07 6.14 6.14 Total: -1.00 -33.04 407.16 -9.68 -42.72 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -9.21 Total: -4.01 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.85 Total: 1.41 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.52 Total: -48.35 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.25 Total: -13.09 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.04 -9.68 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088235881.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.882 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds