Wall clock time and date at job start Wed Apr 1 2020 02:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47423 * 2 1 4 4 H 1.08999 * 109.47160 * 54.99722 * 3 2 1 5 5 F 1.39902 * 109.47008 * 294.99523 * 3 2 1 6 6 C 1.50703 * 109.47088 * 174.99726 * 3 2 1 7 7 O 1.21271 * 119.99963 * 43.47804 * 6 3 2 8 8 N 1.34780 * 119.99773 * 223.47505 * 6 3 2 9 9 C 1.46923 * 120.63329 * 4.11911 * 8 6 3 10 10 C 1.52760 * 109.00713 * 233.58540 * 9 8 6 11 11 C 1.53043 * 109.38033 * 305.58523 * 10 9 8 12 12 C 1.52999 * 109.45747 * 181.26315 * 11 10 9 13 13 O 1.42904 * 109.47434 * 64.93067 * 12 11 10 14 14 C 1.42901 * 114.00322 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.88130 * 26.12239 * 14 13 12 16 16 C 1.55153 * 111.00220 * 150.00077 * 14 13 12 17 17 C 1.54320 * 102.94101 * 153.57950 * 16 14 13 18 18 N 1.47024 * 107.27388 * 337.80780 * 17 16 14 19 19 C 1.36938 * 125.65123 * 178.96133 * 18 17 16 20 20 H 1.07996 * 119.99834 * 185.07853 * 19 18 17 21 21 C 1.38813 * 119.99717 * 5.08438 * 19 18 17 22 22 N 1.31614 * 120.00087 * 354.82150 * 21 19 18 23 23 Si 1.86801 * 119.99481 * 174.82060 * 21 19 18 24 24 H 1.48496 * 109.47023 * 94.99942 * 23 21 19 25 25 H 1.48505 * 109.46798 * 214.99467 * 23 21 19 26 26 H 1.48490 * 109.47489 * 334.99686 * 23 21 19 27 27 C 1.47426 * 108.69950 * 358.94143 * 18 17 16 28 28 C 1.53034 * 109.53596 * 61.24472 * 11 10 9 29 29 C 1.46926 * 120.62788 * 184.39591 * 8 6 3 30 30 H 1.09006 * 109.46878 * 59.99716 * 1 2 3 31 31 H 1.08996 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47100 * 300.00674 * 1 2 3 33 33 H 1.08997 * 109.47100 * 239.99326 * 2 1 3 34 34 H 1.09000 * 109.46459 * 120.00138 * 2 1 3 35 35 H 1.08999 * 109.58402 * 353.41498 * 9 8 6 36 36 H 1.09001 * 109.58865 * 113.83735 * 9 8 6 37 37 H 1.09001 * 109.56011 * 185.55356 * 10 9 8 38 38 H 1.08997 * 109.36465 * 65.49571 * 10 9 8 39 39 H 1.08997 * 109.45792 * 301.22077 * 11 10 9 40 40 H 1.09002 * 109.47039 * 184.92840 * 12 11 10 41 41 H 1.09001 * 109.47494 * 304.93178 * 12 11 10 42 42 H 1.09000 * 110.71986 * 271.94435 * 16 14 13 43 43 H 1.09000 * 110.72259 * 35.04183 * 16 14 13 44 44 H 1.09000 * 109.88399 * 97.22551 * 17 16 14 45 45 H 1.09003 * 109.88626 * 218.23474 * 17 16 14 46 46 H 0.97009 * 119.99891 * 180.02562 * 22 21 19 47 47 H 1.09003 * 110.36639 * 265.29273 * 27 18 17 48 48 H 1.08993 * 110.36751 * 142.97072 * 27 18 17 49 49 H 1.09002 * 109.49654 * 178.68314 * 28 11 10 50 50 H 1.08997 * 109.52708 * 58.60126 * 28 11 10 51 51 H 1.09003 * 109.58847 * 246.15920 * 29 8 6 52 52 H 1.09004 * 109.58623 * 6.58336 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 9 1.6701 2.0679 -1.1955 6 6 3.5420 1.4441 0.1239 7 8 4.2048 0.6620 -0.5240 8 7 4.1486 2.3149 0.9547 9 6 3.3566 3.2067 1.8127 10 6 3.8064 4.6482 1.5815 11 6 5.3184 4.7490 1.7955 12 6 5.7661 6.1982 1.5953 13 8 5.1837 7.0210 2.6082 14 6 5.5405 8.4014 2.5121 15 1 5.7920 8.6672 1.4853 16 6 4.4068 9.3082 3.0595 17 6 5.1648 10.5738 3.5126 18 7 6.5646 10.1862 3.7401 19 6 7.5718 11.0267 4.1329 20 1 8.5864 10.6620 4.1943 21 6 7.2884 12.3476 4.4524 22 7 6.0720 12.8198 4.2806 23 14 8.6338 13.4547 5.1261 24 1 9.2437 14.2258 4.0132 25 1 8.0514 14.3939 6.1181 26 1 9.6755 12.6247 5.7824 27 6 6.7043 8.7426 3.4758 28 6 6.0388 3.8491 0.7890 29 6 5.6145 2.3946 1.0152 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 2.3000 3.1106 1.5629 36 1 3.5126 2.9413 2.8583 37 1 3.2949 5.3071 2.2833 38 1 3.5630 4.9435 0.5609 39 1 5.5638 4.4300 2.8085 40 1 6.8526 6.2553 1.6611 41 1 5.4427 6.5462 0.6142 42 1 3.6911 9.5481 2.2731 43 1 3.9059 8.8328 3.9028 44 1 5.1128 11.3355 2.7346 45 1 4.7290 10.9565 4.4355 46 1 5.8741 13.7429 4.5035 47 1 6.6081 8.1762 4.4021 48 1 7.6632 8.5349 3.0011 49 1 7.1164 3.9392 0.9265 50 1 5.7749 4.1517 -0.2244 51 1 5.9584 2.0617 1.9945 52 1 6.0471 1.7628 0.2395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088235881.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:13 Heat of formation + Delta-G solvation = -131.688207 kcal Electronic energy + Delta-G solvation = -30382.506855 eV Core-core repulsion = 26103.062384 eV Total energy + Delta-G solvation = -4279.444471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.98140 -41.31898 -39.96130 -38.81660 -37.36608 -35.11868 -34.66032 -33.90092 -32.26086 -31.10590 -29.47286 -28.82109 -27.74678 -26.27583 -24.44256 -24.30285 -22.85671 -22.05474 -21.89819 -21.39060 -20.20111 -19.01129 -18.91474 -17.89686 -17.74842 -17.15944 -16.71114 -16.56882 -16.32219 -16.15502 -15.74676 -15.57690 -15.51543 -15.12020 -14.84365 -14.70479 -14.49861 -14.19663 -14.07240 -13.90605 -13.83133 -13.69747 -13.45736 -13.17075 -13.11074 -12.93911 -12.84521 -12.71702 -12.34757 -12.26922 -12.18204 -12.03206 -12.02965 -11.85575 -11.83105 -11.63223 -11.56681 -11.47789 -11.35184 -10.75264 -10.71473 -10.38833 -9.81668 -8.92481 -7.87520 -5.23543 1.22039 1.45924 1.47729 1.57212 1.74158 2.44670 2.65198 3.09186 3.31259 3.43980 3.45536 3.70541 3.74920 3.79162 3.85017 3.88373 3.96079 4.06781 4.09844 4.19011 4.29978 4.34744 4.38394 4.43861 4.47461 4.54015 4.64246 4.68300 4.72299 4.75949 4.76903 4.83960 4.87383 4.93875 4.99244 5.00990 5.03406 5.05152 5.10858 5.13657 5.20092 5.34179 5.41738 5.43316 5.46414 5.63789 5.72402 6.15495 6.16002 6.36838 6.85000 7.07753 7.74112 8.38665 9.23184 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.029420 B = 0.001771 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.517651 B =15807.889363 C =16424.965491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.074 3.926 4 H 0.139 0.861 5 F -0.203 7.203 6 C 0.488 3.512 7 O -0.568 6.568 8 N -0.600 5.600 9 C 0.098 3.902 10 C -0.126 4.126 11 C -0.079 4.079 12 C 0.061 3.939 13 O -0.377 6.377 14 C 0.093 3.907 15 H 0.072 0.928 16 C -0.125 4.125 17 C 0.185 3.815 18 N -0.627 5.627 19 C -0.246 4.246 20 H 0.083 0.917 21 C -0.065 4.065 22 N -0.950 5.950 23 Si 0.980 3.020 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.268 1.268 27 C 0.117 3.883 28 C -0.121 4.121 29 C 0.111 3.889 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.013 0.987 45 H 0.013 0.987 46 H 0.248 0.752 47 H 0.025 0.975 48 H 0.042 0.958 49 H 0.092 0.908 50 H 0.060 0.940 51 H 0.089 0.911 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.106 -26.138 -6.604 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.035 3.965 4 H 0.157 0.843 5 F -0.184 7.184 6 C 0.275 3.725 7 O -0.446 6.446 8 N -0.332 5.332 9 C -0.023 4.023 10 C -0.164 4.164 11 C -0.097 4.097 12 C -0.016 4.016 13 O -0.296 6.296 14 C 0.035 3.965 15 H 0.090 0.910 16 C -0.163 4.163 17 C 0.060 3.940 18 N -0.354 5.354 19 C -0.375 4.375 20 H 0.100 0.900 21 C -0.258 4.258 22 N -0.598 5.598 23 Si 0.808 3.192 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.193 1.193 27 C -0.009 4.009 28 C -0.160 4.160 29 C -0.011 4.011 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.031 0.969 45 H 0.032 0.968 46 H 0.058 0.942 47 H 0.042 0.958 48 H 0.060 0.940 49 H 0.110 0.890 50 H 0.079 0.921 51 H 0.107 0.893 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.854 -26.416 -6.763 28.994 hybrid contribution 1.029 1.334 -0.037 1.685 sum -8.825 -25.083 -6.800 27.445 Atomic orbital electron populations 1.21778 0.92621 1.03452 1.02980 1.21996 0.98487 0.92675 1.04559 1.22055 0.90667 0.97554 0.86219 0.84338 1.92862 1.91953 1.84228 1.49387 1.21425 0.91414 0.80437 0.79227 1.90695 1.67280 1.40394 1.46277 1.48361 1.07937 1.36746 1.40163 1.22116 0.96247 0.88605 0.95358 1.21830 0.95491 0.96273 1.02806 1.21076 0.95893 0.92049 1.00697 1.22713 0.97225 0.90996 0.90651 1.87831 1.71523 1.17375 1.52858 1.23010 0.94506 0.81176 0.97853 0.90969 1.22809 0.97126 0.95025 1.01337 1.20920 0.83277 0.92674 0.97162 1.44663 1.06376 1.04048 1.80348 1.19461 0.88831 0.91656 1.37566 0.89966 1.25702 0.99189 0.98706 1.02245 1.70181 1.20397 1.14839 1.54426 0.85042 0.78131 0.78348 0.77681 1.21252 1.21918 1.19298 1.22036 0.97304 0.84809 0.96768 1.21847 1.01457 0.93563 0.99086 1.21686 0.78924 0.96999 1.03497 0.92755 0.90803 0.90576 0.91585 0.88697 0.87489 0.88498 0.89247 0.92133 0.89508 0.93194 0.93163 0.89529 0.90664 0.96880 0.96846 0.94246 0.95755 0.93996 0.88990 0.92075 0.89278 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.83 71.98 0.71 -0.53 16 2 C -0.14 -1.66 5.39 30.59 0.16 -1.49 16 3 C 0.07 1.02 3.38 29.85 0.10 1.12 16 4 H 0.14 0.93 5.37 -2.39 -0.01 0.92 16 5 F -0.20 -3.93 16.75 44.97 0.75 -3.18 16 6 C 0.49 9.31 7.05 87.66 0.62 9.93 16 7 O -0.57 -15.39 16.00 -3.00 -0.05 -15.44 16 8 N -0.60 -8.96 2.98 -819.74 -2.44 -11.41 16 9 C 0.10 0.97 6.29 86.22 0.54 1.52 16 10 C -0.13 -1.75 5.25 30.53 0.16 -1.59 16 11 C -0.08 -1.24 2.39 -10.77 -0.03 -1.26 16 12 C 0.06 1.29 5.15 71.98 0.37 1.66 16 13 O -0.38 -10.57 9.66 -148.98 -1.44 -12.01 16 14 C 0.09 3.17 3.54 31.98 0.11 3.29 16 15 H 0.07 2.38 7.83 -2.39 -0.02 2.36 16 16 C -0.12 -4.58 6.69 31.78 0.21 -4.37 16 17 C 0.18 9.18 5.38 86.73 0.47 9.65 16 18 N -0.63 -32.71 3.39 -692.00 -2.35 -35.06 16 19 C -0.25 -13.95 10.27 84.03 0.86 -13.09 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -3.74 5.48 84.86 0.47 -3.27 16 22 N -0.95 -57.26 10.34 21.65 0.22 -57.04 16 23 Si 0.98 45.71 29.56 68.60 2.03 47.73 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.12 4.84 6.97 86.85 0.61 5.44 16 28 C -0.12 -1.72 5.36 30.67 0.16 -1.56 16 29 C 0.11 1.63 6.42 86.36 0.55 2.19 16 30 H 0.05 0.55 7.94 -2.38 -0.02 0.53 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 1.07 8.04 -2.39 -0.02 1.05 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.11 0.63 5.16 -2.39 -0.01 0.62 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 1.35 7.79 -2.39 -0.02 1.33 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 42 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.01 0.71 7.53 -2.39 -0.02 0.70 16 45 H 0.01 0.75 7.37 -2.39 -0.02 0.73 16 46 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 47 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.08 1.45 7.03 -2.39 -0.02 1.43 16 Total: -1.00 -73.30 407.16 3.69 -69.61 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.88 Total: 9.16 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.08 Total: 7.63 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.57 Total: -103.51 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -1.49 Total: -27.45 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.75 Total: -3.18 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.30 3.69 -69.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088235881.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.079 kcal (2) G-P(sol) polarization free energy of solvation -73.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds