Wall clock time and date at job start Wed Apr 1 2020 02:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47451 * 2 1 4 4 H 1.08998 * 109.46660 * 304.99790 * 3 2 1 5 5 F 1.39895 * 109.47214 * 65.00091 * 3 2 1 6 6 C 1.50700 * 109.47145 * 185.00174 * 3 2 1 7 7 O 1.21286 * 120.00043 * 316.52703 * 6 3 2 8 8 N 1.34772 * 120.00309 * 136.53193 * 6 3 2 9 9 C 1.46931 * 120.60555 * 175.56890 * 8 6 3 10 10 C 1.53194 * 108.77477 * 233.57983 * 9 8 6 11 11 C 1.53044 * 109.33632 * 305.41763 * 10 9 8 12 12 C 1.53000 * 109.45774 * 181.36964 * 11 10 9 13 13 O 1.42901 * 109.47065 * 174.99939 * 12 11 10 14 14 C 1.42895 * 114.00255 * 179.97438 * 13 12 11 15 15 H 1.09007 * 110.64018 * 333.14295 * 14 13 12 16 16 C 1.55159 * 110.72574 * 209.99736 * 14 13 12 17 17 C 1.54905 * 101.58639 * 206.13376 * 16 14 13 18 18 N 1.47427 * 104.82852 * 37.00975 * 17 16 14 19 19 C 1.36946 * 125.64682 * 155.83450 * 18 17 16 20 20 H 1.07995 * 119.99871 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99910 * 0.02619 * 19 18 17 22 22 N 1.31619 * 119.99962 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99901 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47099 * 59.99976 * 23 21 19 25 25 H 1.48503 * 109.47087 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47181 * 299.99867 * 23 21 19 27 27 C 1.47023 * 108.70644 * 335.87300 * 18 17 16 28 28 C 1.53033 * 109.54006 * 61.34561 * 11 10 9 29 29 C 1.46928 * 120.63046 * 355.59528 * 8 6 3 30 30 H 1.09007 * 109.46880 * 59.99971 * 1 2 3 31 31 H 1.08998 * 109.47311 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47214 * 300.00486 * 1 2 3 33 33 H 1.09007 * 109.46995 * 239.99654 * 2 1 3 34 34 H 1.09000 * 109.46953 * 120.00424 * 2 1 3 35 35 H 1.08999 * 109.56200 * 113.81018 * 9 8 6 36 36 H 1.09000 * 109.62076 * 353.38366 * 9 8 6 37 37 H 1.09000 * 109.49973 * 185.44997 * 10 9 8 38 38 H 1.09001 * 109.49882 * 65.38007 * 10 9 8 39 39 H 1.09004 * 109.46069 * 301.32429 * 11 10 9 40 40 H 1.09000 * 109.46966 * 294.99376 * 12 11 10 41 41 H 1.08997 * 109.47536 * 54.99876 * 12 11 10 42 42 H 1.08999 * 111.00062 * 324.21635 * 16 14 13 43 43 H 1.09007 * 111.00049 * 88.06078 * 16 14 13 44 44 H 1.08997 * 110.36556 * 155.84543 * 17 16 14 45 45 H 1.08995 * 110.36728 * 278.17416 * 17 16 14 46 46 H 0.96999 * 120.00302 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.88099 * 241.64250 * 27 18 17 48 48 H 1.08991 * 109.88222 * 120.47631 * 27 18 17 49 49 H 1.09008 * 109.49932 * 58.58727 * 28 11 10 50 50 H 1.09000 * 109.49910 * 178.64622 * 28 11 10 51 51 H 1.09001 * 109.58629 * 6.60196 * 29 8 6 52 52 H 1.08992 * 109.58964 * 246.17808 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8418 5 9 1.6700 2.0680 1.1954 6 6 3.5420 1.4442 -0.1239 7 8 4.2048 0.6620 0.5240 8 7 4.1487 2.3150 -0.9545 9 6 5.6146 2.3947 -1.0139 10 6 6.0388 3.8495 -0.7889 11 6 5.3183 4.7490 -1.7959 12 6 5.7659 6.1983 -1.5960 13 8 5.1836 7.0207 -2.6092 14 6 5.5393 8.4013 -2.5129 15 1 5.7766 8.6660 -1.4824 16 6 4.4012 9.3012 -3.0627 17 6 5.1863 10.5623 -3.5017 18 7 6.4566 10.0463 -4.0436 19 6 7.2572 10.6888 -4.9500 20 1 8.1722 10.2245 -5.2867 21 6 6.8927 11.9370 -5.4358 22 7 5.7777 12.5031 -5.0250 23 14 7.9851 12.8137 -6.6717 24 1 8.1204 11.9790 -7.8924 25 1 7.3770 14.1200 -7.0308 26 1 9.3261 13.0388 -6.0748 27 6 6.7210 8.7273 -3.4504 28 6 3.8064 4.6481 -1.5821 29 6 3.3568 3.2026 -1.8170 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.9589 2.0610 -1.9928 36 1 6.0473 1.7637 -0.2376 37 1 7.1163 3.9397 -0.9263 38 1 5.7745 4.1529 0.2241 39 1 5.5640 4.4297 -2.8087 40 1 5.4422 6.5465 -0.6151 41 1 6.8524 6.2555 -1.6615 42 1 3.9085 8.8316 -3.9140 43 1 3.6811 9.5420 -2.2805 44 1 4.6365 11.1022 -4.2727 45 1 5.3743 11.2095 -2.6451 46 1 5.5227 13.3752 -5.3648 47 1 7.6495 8.7568 -2.8800 48 1 6.7897 7.9748 -4.2358 49 1 3.5626 4.9436 -0.5616 50 1 3.2950 5.3072 -2.2837 51 1 2.2997 3.1041 -1.5703 52 1 3.5168 2.9353 -2.8615 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088235882.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:17 Heat of formation + Delta-G solvation = -130.019641 kcal Electronic energy + Delta-G solvation = -30412.221655 eV Core-core repulsion = 26132.849538 eV Total energy + Delta-G solvation = -4279.372117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.98422 -41.31830 -39.97870 -38.80615 -37.35615 -35.12197 -34.66566 -33.89045 -32.24595 -31.10344 -29.45597 -28.80860 -27.75714 -26.27910 -24.45991 -24.31249 -22.86399 -22.08018 -21.83864 -21.38121 -20.20611 -19.01438 -18.92202 -17.90455 -17.74009 -17.16821 -16.75771 -16.57225 -16.38870 -16.12920 -15.74940 -15.56326 -15.49402 -15.19638 -14.83634 -14.70107 -14.46330 -14.27239 -13.99410 -13.90930 -13.83458 -13.58656 -13.42268 -13.17018 -13.03846 -12.96917 -12.84913 -12.63779 -12.42489 -12.27966 -12.25377 -12.05795 -12.03279 -11.85739 -11.80999 -11.64487 -11.54982 -11.47382 -11.27486 -10.75732 -10.75200 -10.41257 -9.82221 -8.91331 -7.78506 -5.23815 1.21626 1.46825 1.50220 1.56721 1.73501 2.46811 2.66377 3.08632 3.31671 3.43513 3.45128 3.71010 3.72847 3.78188 3.85332 3.87330 3.94688 4.05487 4.11936 4.19630 4.29481 4.34128 4.38034 4.43538 4.46924 4.53578 4.65984 4.68013 4.72018 4.75880 4.78500 4.83212 4.85712 4.94458 4.99801 5.02630 5.03239 5.04463 5.07308 5.13288 5.19714 5.33933 5.40836 5.44425 5.45700 5.61336 5.78234 6.15212 6.28066 6.37911 6.84441 7.09135 7.75765 8.39145 9.23233 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.027156 B = 0.001790 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.835614 B =15635.242902 C =16154.479707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.074 3.926 4 H 0.139 0.861 5 F -0.203 7.203 6 C 0.489 3.511 7 O -0.567 6.567 8 N -0.600 5.600 9 C 0.111 3.889 10 C -0.121 4.121 11 C -0.079 4.079 12 C 0.060 3.940 13 O -0.380 6.380 14 C 0.095 3.905 15 H 0.078 0.922 16 C -0.124 4.124 17 C 0.153 3.847 18 N -0.626 5.626 19 C -0.243 4.243 20 H 0.079 0.921 21 C -0.067 4.067 22 N -0.948 5.948 23 Si 0.983 3.017 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.115 3.885 28 C -0.125 4.125 29 C 0.098 3.902 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.077 0.923 45 H -0.006 1.006 46 H 0.249 0.751 47 H 0.023 0.977 48 H 0.027 0.973 49 H 0.062 0.938 50 H 0.087 0.913 51 H 0.108 0.892 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 -24.643 8.981 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.035 3.965 4 H 0.156 0.844 5 F -0.184 7.184 6 C 0.275 3.725 7 O -0.446 6.446 8 N -0.332 5.332 9 C -0.011 4.011 10 C -0.159 4.159 11 C -0.098 4.098 12 C -0.017 4.017 13 O -0.299 6.299 14 C 0.037 3.963 15 H 0.096 0.904 16 C -0.162 4.162 17 C 0.028 3.972 18 N -0.353 5.353 19 C -0.372 4.372 20 H 0.097 0.903 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.811 3.189 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.011 4.011 28 C -0.163 4.163 29 C -0.023 4.023 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.012 0.988 46 H 0.058 0.942 47 H 0.041 0.959 48 H 0.045 0.955 49 H 0.081 0.919 50 H 0.106 0.894 51 H 0.126 0.874 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.241 -24.935 9.097 28.106 hybrid contribution 1.061 1.081 -0.167 1.524 sum -8.180 -23.855 8.930 26.753 Atomic orbital electron populations 1.21778 0.92616 1.03458 1.02982 1.21998 0.98493 0.92669 1.04561 1.22049 0.90656 0.97553 0.86223 0.84389 1.92860 1.91948 1.84218 1.49363 1.21427 0.91415 0.80399 0.79250 1.90698 1.67275 1.40337 1.46320 1.48359 1.07933 1.36891 1.40018 1.21685 0.78929 0.97045 1.03463 1.21844 1.01412 0.93507 0.99107 1.21079 0.95949 0.92183 1.00596 1.22721 0.97194 0.91004 0.90735 1.87875 1.71508 1.17555 1.52932 1.22898 0.94291 0.81369 0.97762 0.90381 1.22955 0.96904 0.95469 1.00915 1.21754 0.86365 0.92769 0.96321 1.44701 1.23929 1.17365 1.49284 1.19416 1.02188 0.99584 1.16042 0.90300 1.25667 0.99483 0.98156 1.02597 1.70019 1.24861 1.16940 1.47949 0.85088 0.77779 0.77340 0.78719 1.20268 1.21706 1.20441 1.21834 0.96552 0.87535 0.95175 1.21894 0.95430 0.96183 1.02816 1.22202 0.96283 0.88653 0.95197 0.90616 0.90795 0.92712 0.88733 0.91545 0.89422 0.90132 0.89011 0.91910 0.89810 0.92856 0.93249 0.91522 0.89163 0.90466 0.98846 0.94151 0.95945 0.95500 0.91931 0.89449 0.87428 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.83 71.98 0.71 -0.55 16 2 C -0.14 -1.68 5.39 30.59 0.16 -1.52 16 3 C 0.07 1.03 3.38 29.85 0.10 1.13 16 4 H 0.14 0.97 5.37 -2.39 -0.01 0.96 16 5 F -0.20 -3.93 16.75 44.97 0.75 -3.18 16 6 C 0.49 9.41 7.05 87.66 0.62 10.02 16 7 O -0.57 -15.45 16.00 -3.05 -0.05 -15.50 16 8 N -0.60 -9.16 2.97 -818.90 -2.43 -11.60 16 9 C 0.11 1.66 6.42 86.36 0.55 2.22 16 10 C -0.12 -1.74 5.36 30.67 0.16 -1.57 16 11 C -0.08 -1.30 2.39 -10.77 -0.03 -1.32 16 12 C 0.06 1.29 5.15 71.98 0.37 1.66 16 13 O -0.38 -11.00 9.58 -148.98 -1.43 -12.43 16 14 C 0.10 3.25 3.45 31.78 0.11 3.36 16 15 H 0.08 2.43 7.82 -2.38 -0.02 2.41 16 16 C -0.12 -4.63 6.81 31.99 0.22 -4.41 16 17 C 0.15 7.56 5.89 86.85 0.51 8.07 16 18 N -0.63 -32.92 3.40 -692.00 -2.35 -35.27 16 19 C -0.24 -13.86 10.27 84.03 0.86 -13.00 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 21 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 22 N -0.95 -56.40 10.09 21.65 0.22 -56.18 16 23 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 C 0.11 4.86 7.02 86.73 0.61 5.47 16 28 C -0.13 -1.80 5.27 30.67 0.16 -1.64 16 29 C 0.10 1.03 6.32 86.36 0.55 1.57 16 30 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.56 7.94 -2.39 -0.02 0.54 16 33 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 1.08 8.04 -2.39 -0.02 1.06 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.47 7.03 -2.39 -0.02 1.46 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.08 8.11 -2.39 -0.02 1.06 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 44 H 0.08 4.34 5.87 -2.39 -0.01 4.33 16 45 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 46 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.03 1.17 8.06 -2.39 -0.02 1.15 16 49 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.09 1.39 7.79 -2.39 -0.02 1.37 16 51 H 0.11 0.68 5.16 -2.39 -0.01 0.67 16 52 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -72.51 406.45 3.76 -68.75 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.89 Total: 11.62 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.14 Total: 6.17 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -4.57 Total: -103.04 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -1.48 Total: -27.93 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.75 Total: -3.18 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -72.51 3.76 -68.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088235882.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.274 kcal (2) G-P(sol) polarization free energy of solvation -72.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds