Wall clock time and date at job start Wed Apr 1 2020 02:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47321 * 2 1 4 4 H 1.09002 * 109.47085 * 304.99944 * 3 2 1 5 5 F 1.39894 * 109.47484 * 65.00184 * 3 2 1 6 6 C 1.50703 * 109.46931 * 185.00451 * 3 2 1 7 7 O 1.21280 * 119.99922 * 316.09732 * 6 3 2 8 8 N 1.34773 * 120.00143 * 136.11012 * 6 3 2 9 9 C 1.46931 * 120.63201 * 5.23983 * 8 6 3 10 10 C 1.53626 * 108.54269 * 126.37010 * 9 8 6 11 11 C 1.53034 * 109.24000 * 54.86061 * 10 9 8 12 12 C 1.53007 * 109.45987 * 178.48687 * 11 10 9 13 13 O 1.42897 * 109.47021 * 295.07025 * 12 11 10 14 14 C 1.42903 * 113.99858 * 179.97438 * 13 12 11 15 15 H 1.08995 * 110.88810 * 26.11466 * 14 13 12 16 16 C 1.55151 * 111.00324 * 149.99749 * 14 13 12 17 17 C 1.54332 * 102.94292 * 153.57376 * 16 14 13 18 18 N 1.47018 * 107.26773 * 337.80565 * 17 16 14 19 19 C 1.36940 * 125.64782 * 178.95792 * 18 17 16 20 20 H 1.07994 * 120.00379 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99742 * 359.97438 * 19 18 17 22 22 N 1.31620 * 120.00500 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99998 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47419 * 90.00351 * 23 21 19 25 25 H 1.48503 * 109.47469 * 210.00279 * 23 21 19 26 26 H 1.48504 * 109.47162 * 330.00056 * 23 21 19 27 27 C 1.47427 * 108.70618 * 358.93967 * 18 17 16 28 28 C 1.53044 * 109.53965 * 298.50697 * 11 10 9 29 29 C 1.46926 * 120.63304 * 185.52485 * 8 6 3 30 30 H 1.09000 * 109.47613 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47057 * 300.00439 * 1 2 3 32 32 H 1.08997 * 109.47441 * 59.99676 * 1 2 3 33 33 H 1.09003 * 109.47057 * 239.99561 * 2 1 3 34 34 H 1.09006 * 109.47286 * 120.00104 * 2 1 3 35 35 H 1.09002 * 109.58908 * 246.20582 * 9 8 6 36 36 H 1.08996 * 109.58248 * 6.62630 * 9 8 6 37 37 H 1.08992 * 109.63362 * 294.86664 * 10 9 8 38 38 H 1.08998 * 109.42471 * 174.72642 * 10 9 8 39 39 H 1.09003 * 109.46621 * 58.52820 * 11 10 9 40 40 H 1.09005 * 109.46646 * 55.06780 * 12 11 10 41 41 H 1.08998 * 109.47424 * 175.06609 * 12 11 10 42 42 H 1.08999 * 110.72283 * 271.93744 * 16 14 13 43 43 H 1.09003 * 110.72643 * 35.03659 * 16 14 13 44 44 H 1.08998 * 109.87985 * 97.22072 * 17 16 14 45 45 H 1.09001 * 109.88354 * 218.23367 * 17 16 14 46 46 H 0.97000 * 120.00527 * 179.97438 * 22 21 19 47 47 H 1.09000 * 110.36524 * 265.29047 * 27 18 17 48 48 H 1.09005 * 110.36656 * 142.96380 * 27 18 17 49 49 H 1.09000 * 109.49260 * 301.41588 * 28 11 10 50 50 H 1.09001 * 109.52745 * 181.33481 * 28 11 10 51 51 H 1.09003 * 109.58297 * 353.36306 * 29 8 6 52 52 H 1.08994 * 109.59355 * 113.79201 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6700 2.0680 1.1954 6 6 3.5419 1.4442 -0.1239 7 8 4.2052 0.6672 0.5297 8 7 4.1481 2.3093 -0.9610 9 6 3.3698 3.3323 -1.6726 10 6 3.9990 4.7060 -1.3947 11 6 5.4812 4.6677 -1.7739 12 6 6.1042 6.0445 -1.5345 13 8 5.5105 6.9964 -2.4195 14 6 6.0242 8.3222 -2.2766 15 1 7.0408 8.3048 -1.8838 16 6 5.9612 9.0911 -3.6227 17 6 5.8742 10.5655 -3.1749 18 7 5.3576 10.5737 -1.7985 19 6 5.1519 11.6883 -1.0299 20 1 4.7668 11.5884 -0.0259 21 6 5.4385 12.9465 -1.5413 22 7 5.9074 13.0684 -2.7651 23 14 5.1573 14.4669 -0.4933 24 1 6.3898 14.7724 0.2767 25 1 4.8236 15.6180 -1.3702 26 1 4.0348 14.2194 0.4470 27 6 5.0973 9.1834 -1.3828 28 6 6.2023 3.6256 -0.9159 29 6 5.5988 2.2433 -1.1841 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3899 3.1279 -2.7431 36 1 2.3399 3.3217 -1.3159 37 1 3.9003 4.9466 -0.3363 38 1 3.4907 5.4646 -1.9898 39 1 5.5801 4.4027 -2.8266 40 1 5.9281 6.3485 -0.5027 41 1 7.1771 5.9952 -1.7207 42 1 6.8644 8.9186 -4.2081 43 1 5.0754 8.8046 -4.1896 44 1 6.8645 11.0201 -3.2020 45 1 5.1971 11.1128 -3.8308 46 1 6.1073 13.9477 -3.1226 47 1 4.0532 8.9242 -1.5583 48 1 5.3513 9.0479 -0.3315 49 1 6.0828 3.8765 0.1381 50 1 7.2623 3.6152 -1.1695 51 1 6.0401 1.5140 -0.5047 52 1 5.7971 1.9518 -2.2154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088235883.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:19 Heat of formation + Delta-G solvation = -133.018320 kcal Electronic energy + Delta-G solvation = -30490.720047 eV Core-core repulsion = 26211.217898 eV Total energy + Delta-G solvation = -4279.502149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.99316 -41.30319 -39.96475 -38.79873 -37.36638 -35.11329 -34.66550 -33.90441 -32.21649 -31.10117 -29.48462 -28.81721 -27.72906 -26.28159 -24.47411 -24.30851 -22.84438 -22.04505 -21.89733 -21.39864 -20.21693 -19.01309 -18.87915 -17.90146 -17.77948 -17.16247 -16.71726 -16.56950 -16.42121 -15.91851 -15.81045 -15.63693 -15.52140 -15.06895 -14.88919 -14.67912 -14.52198 -14.25784 -14.02424 -13.89437 -13.82999 -13.73800 -13.33240 -13.19973 -13.15019 -12.93228 -12.87725 -12.73185 -12.35573 -12.25916 -12.17583 -12.03801 -12.03794 -11.87683 -11.78624 -11.70407 -11.57718 -11.45827 -11.35244 -10.77720 -10.72938 -10.39831 -9.80978 -8.93410 -7.87002 -5.23779 1.21855 1.45495 1.47503 1.56307 1.74098 2.44294 2.64846 3.08695 3.31554 3.44377 3.49912 3.69967 3.72883 3.77183 3.85794 3.89304 3.96252 4.03377 4.09938 4.18908 4.28913 4.34777 4.37632 4.42922 4.47571 4.54427 4.63948 4.66314 4.71489 4.75715 4.76334 4.83267 4.88163 4.91871 4.97230 5.00976 5.03335 5.05108 5.09968 5.12724 5.20957 5.33252 5.41698 5.42633 5.46189 5.63131 5.72849 6.14777 6.15436 6.36502 6.84753 7.07656 7.73749 8.37885 9.23223 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.001950 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.370373 B =14358.828966 C =15196.430497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.138 4.138 3 C 0.074 3.926 4 H 0.138 0.862 5 F -0.205 7.205 6 C 0.489 3.511 7 O -0.567 6.567 8 N -0.600 5.600 9 C 0.100 3.900 10 C -0.127 4.127 11 C -0.076 4.076 12 C 0.060 3.940 13 O -0.377 6.377 14 C 0.094 3.906 15 H 0.073 0.927 16 C -0.125 4.125 17 C 0.185 3.815 18 N -0.627 5.627 19 C -0.245 4.245 20 H 0.081 0.919 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.981 3.019 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.270 1.270 27 C 0.117 3.883 28 C -0.122 4.122 29 C 0.110 3.890 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.040 0.960 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.017 0.983 45 H 0.010 0.990 46 H 0.248 0.752 47 H 0.025 0.975 48 H 0.039 0.961 49 H 0.054 0.946 50 H 0.096 0.904 51 H 0.080 0.920 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -27.985 -0.831 28.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.035 3.965 4 H 0.155 0.845 5 F -0.186 7.186 6 C 0.275 3.725 7 O -0.446 6.446 8 N -0.333 5.333 9 C -0.021 4.021 10 C -0.165 4.165 11 C -0.095 4.095 12 C -0.017 4.017 13 O -0.296 6.296 14 C 0.035 3.965 15 H 0.091 0.909 16 C -0.163 4.163 17 C 0.060 3.940 18 N -0.354 5.354 19 C -0.374 4.374 20 H 0.099 0.901 21 C -0.259 4.259 22 N -0.599 5.599 23 Si 0.809 3.191 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.194 1.194 27 C -0.009 4.009 28 C -0.160 4.160 29 C -0.011 4.011 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.035 0.965 45 H 0.029 0.971 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.057 0.943 49 H 0.073 0.927 50 H 0.114 0.886 51 H 0.098 0.902 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.530 -28.222 -0.610 28.765 hybrid contribution 0.264 1.537 0.952 1.827 sum -5.267 -26.685 0.342 27.202 Atomic orbital electron populations 1.21776 0.92662 1.03475 1.02931 1.21990 0.98446 0.92576 1.04600 1.22054 0.90711 0.97597 0.86148 0.84491 1.92862 1.92034 1.84245 1.49453 1.21424 0.91346 0.80500 0.79221 1.90694 1.67170 1.41604 1.45161 1.48368 1.09333 1.31996 1.43584 1.22242 0.95577 0.85875 0.98414 1.21970 0.95808 0.96994 1.01756 1.21078 0.94918 0.91993 1.01511 1.22726 0.97100 0.88960 0.92872 1.87830 1.64537 1.16904 1.60305 1.23012 0.95956 0.81609 0.95962 0.90886 1.22820 1.02858 0.94274 0.96371 1.20918 0.96467 0.91759 0.84834 1.44667 1.76402 1.01306 1.13056 1.19443 1.36746 0.84840 0.96366 0.90089 1.25691 1.01650 1.00467 0.98124 1.70172 1.51081 1.22408 1.16250 0.85043 0.77958 0.78630 0.77470 1.21115 1.21910 1.19450 1.22033 0.97220 0.84679 0.96971 1.21852 1.00932 0.93453 0.99752 1.21722 0.78791 0.97623 1.02991 0.90705 0.92846 0.90623 0.88573 0.91562 0.87927 0.88102 0.92863 0.89667 0.88774 0.94179 0.92235 0.89439 0.90690 0.96471 0.97140 0.94241 0.95738 0.94270 0.92676 0.88554 0.90174 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.83 71.98 0.71 -0.64 16 2 C -0.14 -1.73 5.40 30.59 0.17 -1.57 16 3 C 0.07 1.09 3.19 29.85 0.10 1.18 16 4 H 0.14 1.07 5.70 -2.39 -0.01 1.06 16 5 F -0.20 -4.25 16.75 44.97 0.75 -3.50 16 6 C 0.49 9.65 7.04 87.66 0.62 10.27 16 7 O -0.57 -15.70 16.00 -3.03 -0.05 -15.75 16 8 N -0.60 -9.23 2.97 -818.05 -2.43 -11.66 16 9 C 0.10 1.11 6.22 86.51 0.54 1.64 16 10 C -0.13 -2.03 5.29 30.82 0.16 -1.86 16 11 C -0.08 -1.21 2.39 -10.77 -0.03 -1.24 16 12 C 0.06 1.29 5.15 71.98 0.37 1.66 16 13 O -0.38 -10.65 9.66 -148.98 -1.44 -12.08 16 14 C 0.09 3.20 3.55 31.99 0.11 3.31 16 15 H 0.07 2.41 7.83 -2.39 -0.02 2.39 16 16 C -0.13 -4.60 6.69 31.78 0.21 -4.39 16 17 C 0.19 9.23 5.37 86.73 0.47 9.69 16 18 N -0.63 -32.89 3.39 -691.97 -2.35 -35.24 16 19 C -0.25 -13.96 10.28 84.03 0.86 -13.10 16 20 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 21 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 22 N -0.95 -57.37 10.31 21.65 0.22 -57.15 16 23 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 C 0.12 4.89 6.97 86.86 0.61 5.50 16 28 C -0.12 -1.72 5.36 30.67 0.16 -1.56 16 29 C 0.11 1.56 6.44 86.36 0.56 2.12 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.59 7.94 -2.39 -0.02 0.57 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 1.11 8.04 -2.38 -0.02 1.09 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 36 H 0.10 0.83 5.43 -2.39 -0.01 0.81 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.52 7.79 -2.39 -0.02 1.50 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 42 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.02 0.94 7.38 -2.39 -0.02 0.92 16 45 H 0.01 0.58 7.50 -2.39 -0.02 0.56 16 46 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 47 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 49 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.08 1.42 7.00 -2.39 -0.02 1.40 16 52 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -73.77 407.44 3.70 -70.07 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.88 Total: 9.63 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.08 Total: 7.68 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.55 Total: -104.05 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -1.49 Total: -27.83 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.75 Total: -3.50 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -73.77 3.70 -70.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088235883.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.951 kcal (2) G-P(sol) polarization free energy of solvation -73.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds