Wall clock time and date at job start Wed Apr 1 2020 02:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47423 * 2 1 4 4 C 1.53000 * 109.47277 * 120.00000 * 2 1 3 5 5 H 1.09003 * 109.47360 * 54.92039 * 4 2 1 6 6 F 1.39903 * 109.46994 * 294.92380 * 4 2 1 7 7 C 1.50699 * 109.47403 * 174.92154 * 4 2 1 8 8 O 1.21287 * 119.99884 * 99.46449 * 7 4 2 9 9 N 1.34777 * 120.00142 * 279.46193 * 7 4 2 10 10 C 1.47158 * 120.98536 * 355.12065 * 9 7 4 11 11 C 1.53302 * 108.36703 * 230.57486 * 10 9 7 12 12 O 1.42963 * 109.23641 * 307.65244 * 11 10 9 13 13 C 1.42907 * 114.20736 * 62.48821 * 12 11 10 14 14 C 1.52957 * 109.56818 * 177.75198 * 13 12 11 15 15 C 1.52998 * 109.50851 * 299.57512 * 14 13 12 16 16 C 1.53012 * 109.46638 * 300.05791 * 15 14 13 17 17 N 1.46493 * 109.48209 * 180.02562 * 16 15 14 18 18 C 1.36940 * 119.99903 * 85.02068 * 17 16 15 19 19 H 1.08000 * 120.00160 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99533 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00495 * 359.97438 * 20 18 17 22 22 Si 1.86811 * 119.99711 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.46823 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46857 * 119.99940 * 22 20 18 25 25 H 1.48501 * 109.46745 * 239.99659 * 22 20 18 26 26 C 1.52999 * 109.44578 * 60.06008 * 16 15 14 27 27 C 1.52948 * 109.58481 * 57.50539 * 13 12 11 28 28 C 1.47152 * 120.99093 * 175.09577 * 9 7 4 29 29 H 1.09004 * 109.47115 * 300.00042 * 1 2 3 30 30 H 1.09008 * 109.47293 * 59.99869 * 1 2 3 31 31 H 1.08997 * 109.47441 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47552 * 239.99969 * 2 1 3 33 33 H 1.08996 * 109.47132 * 55.59005 * 3 2 1 34 34 H 1.09005 * 109.47463 * 175.59308 * 3 2 1 35 35 H 1.08998 * 109.47128 * 295.58730 * 3 2 1 36 36 H 1.08999 * 109.68204 * 110.86027 * 10 9 7 37 37 H 1.08992 * 109.68415 * 350.29402 * 10 9 7 38 38 H 1.08998 * 109.51159 * 67.58162 * 11 10 9 39 39 H 1.09004 * 109.51001 * 187.72468 * 11 10 9 40 40 H 1.08993 * 109.46505 * 59.58384 * 14 13 12 41 41 H 1.08993 * 109.46250 * 179.56507 * 14 13 12 42 42 H 1.09000 * 109.47322 * 180.02562 * 15 14 13 43 43 H 1.09002 * 109.47908 * 60.05734 * 15 14 13 44 44 H 1.09005 * 109.47376 * 300.07355 * 16 15 14 45 45 H 0.96999 * 119.99996 * 265.02761 * 17 16 15 46 46 H 0.97007 * 120.00024 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.47565 * 179.97438 * 26 16 15 48 48 H 1.09007 * 109.46820 * 59.95465 * 26 16 15 49 49 H 1.09001 * 109.46412 * 180.44522 * 27 13 12 50 50 H 1.09003 * 109.45843 * 300.41317 * 27 13 12 51 51 H 1.09004 * 109.67663 * 9.80280 * 28 9 7 52 52 H 1.08995 * 109.67980 * 249.26423 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6043 -1.7193 1.2959 6 9 1.6713 0.0022 2.3885 7 6 3.5417 -0.8311 1.1880 8 8 4.2327 -0.0482 1.8049 9 7 4.1169 -1.7994 0.4477 10 6 3.3023 -2.8249 -0.2232 11 6 3.8744 -4.2029 0.1288 12 8 5.2751 -4.2184 -0.1572 13 6 6.0403 -3.2870 0.6103 14 6 7.5226 -3.4314 0.2617 15 6 7.9886 -4.8512 0.5900 16 6 7.7860 -5.1222 2.0823 17 7 8.2327 -6.4813 2.3971 18 6 9.5533 -6.7227 2.6672 19 1 10.2655 -5.9110 2.6485 20 6 9.9766 -8.0107 2.9650 21 7 9.1087 -8.9999 2.9883 22 14 11.7781 -8.3399 3.3342 23 1 12.5418 -7.0696 3.2443 24 1 11.9083 -8.9006 4.7031 25 1 12.3159 -9.3113 2.3481 26 6 6.3026 -4.9803 2.4289 27 6 5.8356 -3.5607 2.1011 28 6 5.5782 -1.8622 0.2859 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6136 1.9786 0.8478 34 1 3.1272 1.4435 0.0790 35 1 1.7427 1.9330 -0.9269 36 1 3.3407 -2.6762 -1.3024 37 1 2.2703 -2.7571 0.1208 38 1 3.7172 -4.4024 1.1888 39 1 3.3732 -4.9676 -0.4646 40 1 7.6661 -3.2388 -0.8014 41 1 8.1037 -2.7151 0.8423 42 1 9.0450 -4.9534 0.3418 43 1 7.4084 -5.5678 0.0086 44 1 8.3653 -4.4048 2.6637 45 1 7.5931 -7.2103 2.4142 46 1 9.4047 -9.9000 3.1961 47 1 6.1576 -5.1736 3.4918 48 1 5.7233 -5.6969 1.8466 49 1 6.4138 -2.8442 2.6846 50 1 4.7784 -3.4601 2.3470 51 1 6.0537 -1.1578 0.9684 52 1 5.8446 -1.6149 -0.7417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093404285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:48 Heat of formation + Delta-G solvation = -147.217343 kcal Electronic energy + Delta-G solvation = -32213.358437 eV Core-core repulsion = 27933.240571 eV Total energy + Delta-G solvation = -4280.117865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.93872 -41.96627 -40.18631 -38.09756 -36.67575 -35.81381 -35.36896 -33.37214 -31.88632 -31.18074 -29.88743 -28.69994 -28.14624 -26.55934 -25.11458 -24.44479 -23.57459 -22.23874 -21.39707 -20.60095 -20.20464 -19.14185 -18.84470 -17.99378 -17.40189 -17.11458 -16.86670 -16.60711 -16.39537 -16.01415 -15.76490 -15.53284 -15.42404 -15.22824 -14.94009 -14.61514 -14.42870 -14.26935 -14.06410 -13.84889 -13.82579 -13.35003 -13.22279 -13.19288 -13.03580 -12.98772 -12.92571 -12.75704 -12.66336 -12.24382 -12.19773 -12.09650 -12.00408 -11.97123 -11.92086 -11.68284 -11.55553 -11.46012 -11.22727 -10.96202 -10.74194 -10.65976 -9.60237 -8.98747 -7.93699 -5.21562 1.27900 1.46264 1.46845 1.56882 1.60733 2.55817 2.75537 3.06769 3.35558 3.39287 3.51730 3.55917 3.66170 3.68851 3.76262 3.88252 4.00256 4.08607 4.19634 4.26843 4.29631 4.31277 4.33893 4.46295 4.49451 4.54503 4.56611 4.59267 4.68953 4.74286 4.75241 4.84782 4.85724 4.89395 4.97209 4.98927 5.02478 5.07419 5.08623 5.19677 5.27379 5.28485 5.31786 5.38394 5.48887 5.53231 5.69561 6.11828 6.27832 6.30553 6.86889 7.34475 8.11703 8.35072 9.30239 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.002351 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.794285 B =11906.806106 C =11971.474026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.152 4.152 4 C 0.078 3.922 5 H 0.140 0.860 6 F -0.203 7.203 7 C 0.492 3.508 8 O -0.568 6.568 9 N -0.603 5.603 10 C 0.067 3.933 11 C 0.032 3.968 12 O -0.373 6.373 13 C 0.120 3.880 14 C -0.095 4.095 15 C -0.116 4.116 16 C 0.174 3.826 17 N -0.738 5.738 18 C -0.234 4.234 19 H 0.073 0.927 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.970 3.030 23 H -0.267 1.267 24 H -0.294 1.294 25 H -0.293 1.293 26 C -0.105 4.105 27 C -0.125 4.125 28 C 0.094 3.906 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.052 0.948 39 H 0.131 0.869 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.050 0.950 44 H 0.034 0.966 45 H 0.371 0.629 46 H 0.250 0.750 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.086 0.914 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.193 18.585 -12.096 30.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.210 4.210 4 C 0.039 3.961 5 H 0.157 0.843 6 F -0.183 7.183 7 C 0.279 3.721 8 O -0.446 6.446 9 N -0.336 5.336 10 C -0.054 4.054 11 C -0.045 4.045 12 O -0.292 6.292 13 C 0.079 3.921 14 C -0.133 4.133 15 C -0.156 4.156 16 C 0.066 3.934 17 N -0.377 5.377 18 C -0.366 4.366 19 H 0.091 0.909 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.800 3.200 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.220 1.220 26 C -0.143 4.143 27 C -0.163 4.163 28 C -0.029 4.029 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.052 0.948 45 H 0.202 0.798 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.087 0.913 51 H 0.104 0.896 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.569 18.953 -11.833 30.370 hybrid contribution 1.010 -0.664 0.953 1.539 sum -19.559 18.290 -10.880 28.904 Atomic orbital electron populations 1.21850 0.91608 1.03799 1.03052 1.21721 0.98805 0.96860 0.95449 1.21836 1.00171 0.96022 1.02942 1.21957 0.90540 0.98518 0.85089 0.84305 1.92837 1.91720 1.80616 1.53154 1.21476 0.91701 0.80472 0.78418 1.90739 1.65415 1.43582 1.44888 1.48174 1.07470 1.28295 1.49654 1.22899 0.96168 0.86555 0.99791 1.23250 0.81836 0.97527 1.01918 1.88050 1.18760 1.59907 1.62518 1.21648 0.92419 0.87808 0.90187 1.21459 0.92000 0.97189 1.02695 1.21902 0.99631 0.96260 0.97826 1.20434 0.93381 0.85871 0.93762 1.42639 1.06278 1.05236 1.83566 1.19641 0.86532 0.93236 1.37207 0.90893 1.25536 1.01733 0.95847 1.03948 1.69826 1.34555 0.99889 1.57907 0.85111 0.80340 0.77781 0.76800 1.19135 1.22154 1.22024 1.21536 0.95907 0.96860 1.00034 1.21933 1.01399 0.96565 0.96445 1.22274 0.80189 0.97002 1.03408 0.93026 0.90323 0.90159 0.86794 0.93049 0.94511 0.90044 0.87633 0.85859 0.92936 0.85162 0.89799 0.89984 0.94000 0.93087 0.94807 0.79756 0.94122 0.93443 0.92141 0.91588 0.91293 0.89569 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.11 71.98 0.66 -0.25 16 2 C -0.11 -1.06 2.73 -10.80 -0.03 -1.09 16 3 C -0.15 -2.17 8.84 71.98 0.64 -1.53 16 4 C 0.08 1.13 2.59 29.85 0.08 1.21 16 5 H 0.14 1.02 6.28 -2.39 -0.01 1.01 16 6 F -0.20 -4.45 15.82 44.97 0.71 -3.74 16 7 C 0.49 10.33 6.06 87.66 0.53 10.86 16 8 O -0.57 -17.57 15.76 -3.05 -0.05 -17.62 16 9 N -0.60 -10.20 2.55 -817.40 -2.08 -12.28 16 10 C 0.07 0.63 6.02 86.35 0.52 1.15 16 11 C 0.03 0.47 6.60 72.08 0.48 0.94 16 12 O -0.37 -8.58 8.93 -148.98 -1.33 -9.91 16 13 C 0.12 2.82 0.68 -10.74 -0.01 2.82 16 14 C -0.10 -2.49 4.94 30.58 0.15 -2.34 16 15 C -0.12 -4.15 5.36 30.60 0.16 -3.99 16 16 C 0.17 7.05 2.77 45.00 0.12 7.17 16 17 N -0.74 -38.32 5.12 -322.93 -1.65 -39.97 16 18 C -0.23 -13.30 9.93 84.03 0.83 -12.47 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 21 N -0.97 -60.46 13.06 21.65 0.28 -60.18 16 22 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 26 C -0.11 -3.58 5.25 30.59 0.16 -3.42 16 27 C -0.13 -3.40 4.19 30.58 0.13 -3.27 16 28 C 0.09 1.90 5.31 86.34 0.46 2.36 16 29 H 0.05 0.48 7.94 -2.39 -0.02 0.46 16 30 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.11 0.63 7.67 -2.39 -0.02 0.61 16 33 H 0.05 0.86 7.82 -2.39 -0.02 0.84 16 34 H 0.04 0.70 6.92 -2.38 -0.02 0.69 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.12 0.36 5.55 -2.39 -0.01 0.34 16 38 H 0.05 0.88 6.26 -2.39 -0.01 0.87 16 39 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.05 1.95 7.70 -2.39 -0.02 1.94 16 44 H 0.03 1.43 8.08 -2.38 -0.02 1.41 16 45 H 0.37 20.72 7.80 -92.71 -0.72 19.99 16 46 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 47 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.06 2.10 7.70 -2.38 -0.02 2.08 16 49 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.07 1.73 6.11 -2.39 -0.01 1.71 16 51 H 0.09 2.07 7.06 -2.38 -0.02 2.05 16 52 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -76.35 396.58 3.44 -72.91 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.19 Total: 27.68 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.35 Total: -5.98 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -3.45 Total: -112.43 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.38 Total: -27.53 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.71 Total: -3.74 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -76.35 3.44 -72.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093404285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.309 kcal (2) G-P(sol) polarization free energy of solvation -76.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds