Wall clock time and date at job start Wed Apr 1 2020 02:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47080 * 2 1 4 4 C 1.52999 * 109.47098 * 120.00653 * 2 1 3 5 5 H 1.08999 * 109.46905 * 185.00173 * 4 2 1 6 6 F 1.39896 * 109.46811 * 304.99274 * 4 2 1 7 7 C 1.50697 * 109.47408 * 64.99743 * 4 2 1 8 8 O 1.21285 * 119.99946 * 310.53015 * 7 4 2 9 9 N 1.34776 * 120.00147 * 130.53726 * 7 4 2 10 10 C 1.47156 * 120.99074 * 5.70406 * 9 7 4 11 11 C 1.53287 * 108.39939 * 129.43943 * 10 9 7 12 12 O 1.42978 * 109.23389 * 52.30479 * 11 10 9 13 13 C 1.42902 * 114.17372 * 297.51501 * 12 11 10 14 14 C 1.52953 * 109.56347 * 302.62583 * 13 12 11 15 15 C 1.53007 * 109.50713 * 299.57698 * 14 13 12 16 16 C 1.52998 * 109.46196 * 300.05614 * 15 14 13 17 17 N 1.46498 * 109.47418 * 180.02562 * 16 15 14 18 18 C 1.36938 * 119.99992 * 85.02442 * 17 16 15 19 19 H 1.08003 * 119.99803 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00088 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00044 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99959 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46967 * 90.00730 * 22 20 18 24 24 H 1.48499 * 109.47154 * 210.00366 * 22 20 18 25 25 H 1.48498 * 109.47327 * 330.00796 * 22 20 18 26 26 C 1.53004 * 109.45528 * 60.05796 * 16 15 14 27 27 C 1.52948 * 109.59265 * 182.37886 * 13 12 11 28 28 C 1.47155 * 120.99240 * 185.43161 * 9 7 4 29 29 H 1.09000 * 109.47283 * 59.99784 * 1 2 3 30 30 H 1.09001 * 109.47618 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47034 * 299.99828 * 1 2 3 32 32 H 1.09005 * 109.46527 * 240.00157 * 2 1 3 33 33 H 1.09003 * 109.46956 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47238 * 300.00243 * 3 2 1 35 35 H 1.08995 * 109.46813 * 60.00784 * 3 2 1 36 36 H 1.09000 * 109.67882 * 249.17123 * 10 9 7 37 37 H 1.08996 * 109.67827 * 9.71190 * 10 9 7 38 38 H 1.08996 * 109.51496 * 172.22845 * 11 10 9 39 39 H 1.08998 * 109.51091 * 292.38103 * 11 10 9 40 40 H 1.09004 * 109.46630 * 59.58939 * 14 13 12 41 41 H 1.09001 * 109.46980 * 179.57105 * 14 13 12 42 42 H 1.08998 * 109.47333 * 180.02562 * 15 14 13 43 43 H 1.09006 * 109.47032 * 60.05066 * 15 14 13 44 44 H 1.09005 * 109.47438 * 300.06709 * 16 15 14 45 45 H 0.96999 * 120.00155 * 265.01565 * 17 16 15 46 46 H 0.96997 * 119.99827 * 179.97438 * 21 20 18 47 47 H 1.08996 * 109.47434 * 179.97438 * 26 16 15 48 48 H 1.09003 * 109.46779 * 59.95030 * 26 16 15 49 49 H 1.09000 * 109.46628 * 180.43713 * 27 13 12 50 50 H 1.09009 * 109.45759 * 300.40860 * 27 13 12 51 51 H 1.09000 * 109.68581 * 350.22391 * 28 9 7 52 52 H 1.08995 * 109.68751 * 110.78935 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 3.1263 -0.6444 1.2951 6 9 1.4823 -0.1316 2.3885 7 6 1.6413 -2.1734 1.1887 8 8 0.4935 -2.4773 0.9412 9 7 2.5601 -3.1343 1.4098 10 6 3.9272 -2.7923 1.8336 11 6 4.2769 -3.6348 3.0655 12 8 4.0273 -5.0133 2.7796 13 6 2.6595 -5.3136 2.4949 14 6 1.7844 -4.8816 3.6726 15 6 2.2109 -5.6399 4.9312 16 6 2.0496 -7.1436 4.6996 17 7 2.4573 -7.8700 5.9047 18 6 1.5622 -8.0644 6.9227 19 1 0.5558 -7.6818 6.8372 20 6 1.9487 -8.7521 8.0648 21 7 1.0884 -8.9385 9.0435 22 14 3.6895 -9.4131 8.2129 23 1 4.5580 -8.3843 8.8395 24 1 3.6846 -10.6363 9.0549 25 1 4.2100 -9.7441 6.8620 26 6 2.9276 -7.5751 3.5231 27 6 2.5018 -6.8173 2.2641 28 6 2.2245 -4.5570 1.2405 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 4.6272 -3.0124 1.0276 37 1 3.9790 -1.7334 2.0864 38 1 5.3299 -3.4993 3.3124 39 1 3.6612 -3.3206 3.9082 40 1 1.9000 -3.8103 3.8374 41 1 0.7407 -5.1042 3.4507 42 1 1.5867 -5.3320 5.7700 43 1 3.2543 -5.4165 5.1540 44 1 1.0065 -7.3670 4.4755 45 1 3.3612 -8.2133 5.9816 46 1 1.3584 -9.4195 9.8414 47 1 2.8133 -8.6464 3.3581 48 1 3.9706 -7.3508 3.7468 49 1 1.4593 -7.0429 2.0394 50 1 3.1283 -7.1237 1.4263 51 1 1.1489 -4.6665 1.1018 52 1 2.7497 -4.9575 0.3734 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093404286.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:51 Heat of formation + Delta-G solvation = -137.675442 kcal Electronic energy + Delta-G solvation = -32300.363628 eV Core-core repulsion = 28020.659531 eV Total energy + Delta-G solvation = -4279.704097 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.02330 -41.98047 -40.28160 -38.24236 -36.33300 -36.07422 -35.41822 -33.57335 -31.96231 -31.56862 -29.92688 -28.85583 -28.06891 -26.58500 -24.90843 -24.51936 -23.52314 -22.22239 -21.44583 -20.75967 -20.13738 -19.60836 -18.97480 -18.04562 -17.31251 -17.15418 -16.86642 -16.66238 -16.55584 -16.07860 -15.87088 -15.65917 -15.51555 -14.86629 -14.83402 -14.71603 -14.44464 -14.35626 -14.21516 -14.00204 -13.87312 -13.43852 -13.36928 -13.25235 -13.18771 -13.06350 -12.94121 -12.84365 -12.58161 -12.34358 -12.17744 -12.06271 -11.96915 -11.90988 -11.84268 -11.72523 -11.61309 -11.42832 -11.26751 -11.00684 -10.74139 -10.53447 -9.61628 -9.31116 -8.02977 -5.36176 1.21192 1.36829 1.40608 1.48383 1.61730 2.48148 2.71311 3.04839 3.27664 3.35704 3.44170 3.47795 3.67732 3.72291 3.73324 3.75980 3.90439 4.10497 4.17979 4.22112 4.24668 4.30730 4.40138 4.47376 4.49862 4.52437 4.55027 4.55821 4.65525 4.71754 4.76921 4.80514 4.87266 4.95611 4.96197 4.98100 4.99963 5.07495 5.09464 5.18572 5.23941 5.26309 5.35772 5.46393 5.50610 5.56191 5.76210 6.10398 6.21328 6.24016 6.85464 7.07714 7.84598 8.04784 9.18949 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.002597 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.058905 B =10779.199665 C =11049.695514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.108 4.108 3 C -0.145 4.145 4 C 0.078 3.922 5 H 0.140 0.860 6 F -0.202 7.202 7 C 0.489 3.511 8 O -0.551 6.551 9 N -0.604 5.604 10 C 0.067 3.933 11 C 0.034 3.966 12 O -0.369 6.369 13 C 0.117 3.883 14 C -0.128 4.128 15 C -0.116 4.116 16 C 0.176 3.824 17 N -0.751 5.751 18 C -0.228 4.228 19 H 0.050 0.950 20 C -0.068 4.068 21 N -0.987 5.987 22 Si 0.959 3.041 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.249 1.249 26 C -0.111 4.111 27 C -0.093 4.093 28 C 0.092 3.908 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.133 0.867 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.365 0.635 46 H 0.257 0.743 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.084 0.916 50 H 0.098 0.902 51 H 0.087 0.913 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 19.752 -25.575 34.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.127 4.127 3 C -0.202 4.202 4 C 0.040 3.960 5 H 0.158 0.842 6 F -0.183 7.183 7 C 0.276 3.724 8 O -0.429 6.429 9 N -0.337 5.337 10 C -0.055 4.055 11 C -0.043 4.043 12 O -0.288 6.288 13 C 0.077 3.923 14 C -0.166 4.166 15 C -0.156 4.156 16 C 0.068 3.932 17 N -0.394 5.394 18 C -0.359 4.359 19 H 0.068 0.932 20 C -0.259 4.259 21 N -0.638 5.638 22 Si 0.786 3.214 23 H -0.206 1.206 24 H -0.222 1.222 25 H -0.173 1.173 26 C -0.149 4.149 27 C -0.131 4.131 28 C -0.030 4.030 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.199 0.801 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.102 0.898 50 H 0.116 0.884 51 H 0.105 0.895 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.362 19.468 -25.575 33.770 hybrid contribution -0.080 -0.348 1.341 1.388 sum 10.282 19.120 -24.234 32.536 Atomic orbital electron populations 1.22047 0.94913 1.03431 1.01746 1.21604 0.97217 0.98210 0.95625 1.21842 1.02210 0.93257 1.02916 1.22043 1.01350 0.87732 0.84895 0.84237 1.92855 1.88077 1.84562 1.52830 1.21471 0.85158 0.88939 0.76834 1.90650 1.19974 1.83401 1.48872 1.48301 1.12737 1.06251 1.66443 1.22877 0.81865 1.01837 0.98908 1.23194 1.03652 0.81627 0.95860 1.88009 1.24821 1.25815 1.90116 1.21610 0.82358 0.95978 0.92330 1.21970 0.99729 0.99393 0.95556 1.21899 1.00494 0.97194 0.96034 1.20424 0.96790 0.90088 0.85853 1.42793 1.11737 1.67241 1.17640 1.19007 0.93706 1.28122 0.95089 0.93205 1.25551 1.02312 1.01898 0.96178 1.69903 1.36681 1.48552 1.08620 0.85349 0.80083 0.77545 0.78443 1.20568 1.22228 1.17334 1.21615 0.99791 0.99842 0.93693 1.21448 1.03101 0.90374 0.98154 1.22238 1.02876 0.79688 0.98230 0.91268 0.91651 0.93747 0.88028 0.90273 0.90746 0.92887 0.87130 0.86539 0.84929 0.93790 0.92440 0.92165 0.95497 0.92278 0.94817 0.80132 0.93394 0.91593 0.91296 0.89752 0.88361 0.89459 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.69 71.98 0.63 -2.37 16 2 C -0.11 -1.39 2.76 -10.79 -0.03 -1.42 16 3 C -0.15 -1.26 9.11 71.98 0.66 -0.61 16 4 C 0.08 1.17 3.00 29.85 0.09 1.26 16 5 H 0.14 0.94 5.57 -2.39 -0.01 0.93 16 6 F -0.20 -4.30 16.03 44.97 0.72 -3.58 16 7 C 0.49 10.13 6.98 87.66 0.61 10.75 16 8 O -0.55 -15.81 13.40 -3.05 -0.04 -15.85 16 9 N -0.60 -10.34 2.55 -818.29 -2.08 -12.42 16 10 C 0.07 0.68 6.38 86.35 0.55 1.23 16 11 C 0.03 0.52 6.60 72.08 0.48 1.00 16 12 O -0.37 -7.87 8.94 -148.98 -1.33 -9.20 16 13 C 0.12 2.63 0.68 -10.89 -0.01 2.62 16 14 C -0.13 -3.71 4.17 30.58 0.13 -3.58 16 15 C -0.12 -4.22 5.36 30.60 0.16 -4.06 16 16 C 0.18 6.86 2.77 44.99 0.12 6.99 16 17 N -0.75 -36.14 4.92 -322.93 -1.59 -37.73 16 18 C -0.23 -13.46 10.41 84.03 0.87 -12.58 16 19 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 21 N -0.99 -64.99 13.97 21.65 0.30 -64.68 16 22 Si 0.96 46.50 27.74 68.60 1.90 48.40 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 26 C -0.11 -3.28 5.25 30.59 0.16 -3.12 16 27 C -0.09 -2.05 4.94 30.58 0.15 -1.90 16 28 C 0.09 1.75 5.27 86.19 0.45 2.21 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.56 5.34 -2.39 -0.01 1.55 16 31 H 0.04 0.91 7.69 -2.38 -0.02 0.89 16 32 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.05 0.59 7.93 -2.39 -0.02 0.57 16 36 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.12 0.62 5.51 -2.39 -0.01 0.61 16 38 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.04 0.87 6.25 -2.39 -0.01 0.85 16 40 H 0.06 1.66 6.10 -2.39 -0.01 1.64 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 2.12 7.70 -2.38 -0.02 2.10 16 44 H 0.03 1.43 8.08 -2.38 -0.02 1.41 16 45 H 0.37 16.77 5.66 -92.71 -0.52 16.24 16 46 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 47 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.07 2.04 7.70 -2.39 -0.02 2.02 16 49 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 51 H 0.09 1.98 7.05 -2.39 -0.02 1.97 16 52 H 0.10 1.49 8.13 -2.39 -0.02 1.47 16 Total: -1.00 -78.50 390.80 3.71 -74.79 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.33 Total: 27.54 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 5.50 Total: -7.27 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -3.37 Total: -114.84 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.37 Total: -25.04 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.72 Total: -3.58 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.90 Total: 48.40 kcal Total: -78.50 3.71 -74.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093404286.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.888 kcal (2) G-P(sol) polarization free energy of solvation -78.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds