Wall clock time and date at job start Wed Apr 1 2020 01:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46658 * 2 1 4 4 C 1.52998 * 109.47064 * 120.00051 * 2 1 3 5 5 H 1.09007 * 112.78427 * 283.08672 * 4 2 1 6 6 N 1.47315 * 113.52822 * 54.01486 * 4 2 1 7 7 C 1.34781 * 135.89654 * 268.75845 * 6 4 2 8 8 O 1.21279 * 120.00435 * 0.02878 * 7 6 4 9 9 C 1.50700 * 119.99632 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47258 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47124 * 299.99661 * 9 7 6 12 12 F 1.39903 * 109.47148 * 59.99957 * 9 7 6 13 13 C 1.47311 * 88.20015 * 88.77445 * 6 4 2 14 14 C 1.52164 * 87.70507 * 25.94474 * 13 6 4 15 15 C 1.53614 * 116.26733 * 218.07403 * 14 13 6 16 16 C 1.55127 * 102.60758 * 265.11868 * 15 14 13 17 17 H 1.09001 * 110.44882 * 82.19698 * 16 15 14 18 18 O 1.42896 * 110.44814 * 204.74513 * 16 15 14 19 19 C 1.54373 * 104.38616 * 323.46964 * 16 15 14 20 20 H 1.08999 * 110.03199 * 264.09269 * 19 16 15 21 21 N 1.46507 * 110.07050 * 142.68875 * 19 16 15 22 22 C 1.36929 * 120.00191 * 87.81593 * 21 19 16 23 23 H 1.08001 * 120.00336 * 359.97438 * 22 21 19 24 24 C 1.38817 * 120.00074 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99877 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00006 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46831 * 90.00568 * 26 24 22 28 28 H 1.48493 * 109.47165 * 210.00142 * 26 24 22 29 29 H 1.48498 * 109.47389 * 330.00266 * 26 24 22 30 30 C 1.52994 * 116.66100 * 92.10575 * 14 13 6 31 31 H 1.09001 * 109.46995 * 299.99894 * 1 2 3 32 32 H 1.08995 * 109.47373 * 59.99830 * 1 2 3 33 33 H 1.09002 * 109.46781 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47188 * 240.00025 * 2 1 3 35 35 H 1.09005 * 109.47092 * 66.35412 * 3 2 1 36 36 H 1.09003 * 109.46600 * 186.35072 * 3 2 1 37 37 H 1.08995 * 109.47179 * 306.34921 * 3 2 1 38 38 H 1.08999 * 109.46843 * 59.99768 * 10 9 7 39 39 H 1.08999 * 109.47459 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.47204 * 300.00605 * 10 9 7 41 41 H 1.08999 * 109.46513 * 60.00406 * 11 9 7 42 42 H 1.08998 * 109.46701 * 179.97438 * 11 9 7 43 43 H 1.08991 * 109.47248 * 300.00062 * 11 9 7 44 44 H 1.09002 * 113.52537 * 140.67153 * 13 6 4 45 45 H 1.08997 * 113.52596 * 271.22877 * 13 6 4 46 46 H 1.09001 * 110.77581 * 23.39554 * 15 14 13 47 47 H 1.09003 * 110.77825 * 146.83603 * 15 14 13 48 48 H 0.96703 * 113.99503 * 176.42382 * 18 16 15 49 49 H 0.97003 * 119.99821 * 267.81286 * 21 19 16 50 50 H 0.97001 * 119.99833 * 180.02562 * 25 24 22 51 51 H 1.08994 * 110.10931 * 228.04151 * 30 14 13 52 52 H 1.09005 * 110.10869 * 349.61004 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.9662 -0.1104 2.1491 6 7 1.4878 -2.0772 1.4120 7 6 0.4203 -2.6197 2.0306 8 8 -0.3530 -1.9108 2.6392 9 6 0.1875 -4.1072 1.9661 10 6 -1.0815 -4.4591 2.7449 11 6 0.0255 -4.5352 0.5060 12 9 1.2801 -4.7751 2.5294 13 6 2.6116 -2.5816 0.6040 14 6 3.4063 -1.3677 1.0626 15 6 4.3276 -0.7233 0.0159 16 6 5.6946 -1.3959 0.3082 17 1 5.7479 -2.3738 -0.1703 18 8 6.7665 -0.5620 -0.1364 19 6 5.7283 -1.5445 1.8444 20 1 6.2664 -0.7073 2.2888 21 7 6.3729 -2.8074 2.2133 22 6 7.7319 -2.8618 2.3717 23 1 8.3287 -1.9738 2.2243 24 6 8.3426 -4.0582 2.7218 25 7 7.6153 -5.1405 2.9010 26 14 10.1966 -4.1326 2.9372 27 1 10.5434 -3.8297 4.3490 28 1 10.6812 -5.4924 2.5892 29 1 10.8391 -3.1347 2.0446 30 6 4.2614 -1.5417 2.3193 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.7724 1.9225 0.9414 36 1 3.1240 1.4447 -0.1137 37 1 1.5868 1.9881 -0.8277 38 1 -1.9330 -3.9387 2.3064 39 1 -1.2502 -5.5350 2.6979 40 1 -0.9658 -4.1542 3.7850 41 1 0.9299 -4.2846 -0.0484 42 1 -0.1424 -5.6111 0.4594 43 1 -0.8257 -4.0149 0.0672 44 1 3.0160 -3.5277 0.9639 45 1 2.4085 -2.5894 -0.4668 46 1 3.9893 -0.9574 -0.9935 47 1 4.3873 0.3549 0.1648 48 1 7.6456 -0.9080 0.0702 49 1 5.8369 -3.6050 2.3454 50 1 8.0420 -5.9765 3.1459 51 1 4.0915 -0.7125 3.0059 52 1 4.0227 -2.4868 2.8071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093424222.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:32 Heat of formation + Delta-G solvation = -117.618805 kcal Electronic energy + Delta-G solvation = -32911.852404 eV Core-core repulsion = 28633.018028 eV Total energy + Delta-G solvation = -4278.834376 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.97880 -42.59625 -40.00778 -38.54308 -36.07564 -35.45099 -34.84857 -34.44597 -32.48965 -29.75039 -29.09649 -28.39115 -27.94343 -26.85653 -26.26170 -24.84080 -23.68934 -21.96756 -21.13366 -20.47708 -19.27362 -19.23319 -18.61441 -17.79447 -17.66493 -17.15683 -16.89471 -16.33860 -16.12738 -16.06949 -15.80175 -15.31722 -15.23822 -14.94931 -14.69942 -14.51295 -14.20353 -14.13374 -13.81021 -13.56064 -13.47600 -13.37234 -13.29165 -13.10308 -13.02364 -12.97203 -12.89718 -12.69083 -12.64672 -12.49333 -12.39299 -12.16765 -12.07193 -12.03041 -11.87579 -11.78116 -11.65380 -11.55730 -11.25938 -10.87090 -10.74656 -10.61353 -9.77201 -8.95797 -7.92974 -5.21713 1.28570 1.49486 1.50501 1.57412 1.58349 2.56825 2.92677 3.10929 3.29879 3.41913 3.43166 3.49896 3.63991 3.71136 3.75586 3.86872 3.92307 4.00339 4.12516 4.31246 4.40218 4.47378 4.49222 4.51538 4.53314 4.57875 4.60625 4.62231 4.63581 4.71842 4.79727 4.83761 4.86625 4.93452 4.99510 5.00382 5.02377 5.07490 5.08218 5.09915 5.17330 5.24616 5.28066 5.39220 5.45551 5.52879 5.55166 6.27922 6.54767 6.85637 6.89514 7.35093 8.09806 8.33078 9.30200 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.003871 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.928937 B = 7231.715846 C = 9084.692862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 C -0.148 4.148 4 C 0.153 3.847 5 H 0.072 0.928 6 N -0.625 5.625 7 C 0.523 3.477 8 O -0.560 6.560 9 C 0.098 3.902 10 C -0.154 4.154 11 C -0.168 4.168 12 F -0.208 7.208 13 C 0.109 3.891 14 C -0.079 4.079 15 C -0.082 4.082 16 C 0.086 3.914 17 H 0.046 0.954 18 O -0.577 6.577 19 C 0.143 3.857 20 H 0.049 0.951 21 N -0.732 5.732 22 C -0.240 4.240 23 H 0.081 0.919 24 C -0.071 4.071 25 N -0.968 5.968 26 Si 0.967 3.033 27 H -0.294 1.294 28 H -0.300 1.300 29 H -0.263 1.263 30 C -0.094 4.094 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.122 0.878 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.384 0.616 49 H 0.372 0.628 50 H 0.249 0.751 51 H 0.072 0.928 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.075 7.727 -10.608 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C -0.205 4.205 4 C 0.050 3.950 5 H 0.091 0.909 6 N -0.357 5.357 7 C 0.311 3.689 8 O -0.439 6.439 9 C 0.077 3.923 10 C -0.212 4.212 11 C -0.226 4.226 12 F -0.189 7.189 13 C -0.013 4.013 14 C -0.081 4.081 15 C -0.120 4.120 16 C 0.024 3.976 17 H 0.064 0.936 18 O -0.383 6.383 19 C 0.033 3.967 20 H 0.067 0.933 21 N -0.372 5.372 22 C -0.372 4.372 23 H 0.099 0.901 24 C -0.263 4.263 25 N -0.619 5.619 26 Si 0.797 3.203 27 H -0.221 1.221 28 H -0.227 1.227 29 H -0.188 1.188 30 C -0.133 4.133 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.140 0.860 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.232 0.768 49 H 0.204 0.796 50 H 0.058 0.942 51 H 0.090 0.910 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.954 8.402 -10.344 22.359 hybrid contribution 1.542 -1.308 1.259 2.382 sum -16.412 7.094 -9.085 20.055 Atomic orbital electron populations 1.21679 0.94726 1.01003 1.01766 1.21296 0.96017 0.97216 0.96164 1.21932 1.02159 0.93958 1.02476 1.22651 0.88467 0.84682 0.99177 0.90933 1.49785 1.23932 1.11548 1.50475 1.20756 0.79145 0.90600 0.78428 1.90685 1.45736 1.63548 1.43907 1.21434 0.85870 0.86879 0.98122 1.22179 0.94733 1.04010 1.00254 1.22437 1.04778 1.04774 0.90570 1.92935 1.57192 1.81593 1.87181 1.23237 0.82484 0.98265 0.97271 1.21811 0.92991 0.96603 0.96649 1.22224 0.90523 1.01002 0.98296 1.23511 0.87269 0.92439 0.94364 0.93551 1.86261 1.18078 1.51151 1.82850 1.21836 0.92080 0.88501 0.94240 0.93286 1.42738 1.04261 1.07300 1.82858 1.19641 0.84736 0.94967 1.37863 0.90119 1.25492 1.01770 0.95765 1.03304 1.69819 1.35731 1.00343 1.55974 0.85230 0.80893 0.76581 0.77602 1.22146 1.22661 1.18791 1.21865 0.93826 1.01467 0.96135 0.94218 0.90752 0.94200 0.88674 0.93092 0.91204 0.90699 0.89116 0.88577 0.92506 0.90630 0.88524 0.88682 0.90956 0.86021 0.88476 0.88540 0.76754 0.79604 0.94193 0.90969 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.95 71.98 0.64 -1.76 16 2 C -0.09 -1.46 2.18 -10.79 -0.02 -1.48 16 3 C -0.15 -2.16 9.04 71.98 0.65 -1.50 16 4 C 0.15 3.43 3.33 42.22 0.14 3.57 16 5 H 0.07 1.88 8.04 -2.38 -0.02 1.86 16 6 N -0.63 -15.54 2.88 -833.22 -2.40 -17.95 16 7 C 0.52 14.65 6.33 87.66 0.55 15.21 16 8 O -0.56 -18.74 16.75 -3.03 -0.05 -18.80 16 9 C 0.10 2.33 1.41 -11.54 -0.02 2.31 16 10 C -0.15 -3.14 8.22 71.98 0.59 -2.55 16 11 C -0.17 -2.74 8.81 71.98 0.63 -2.11 16 12 F -0.21 -6.33 16.71 44.97 0.75 -5.58 16 13 C 0.11 2.47 5.61 83.56 0.47 2.94 16 14 C -0.08 -1.91 0.94 -52.48 -0.05 -1.96 16 15 C -0.08 -1.86 4.54 31.53 0.14 -1.71 16 16 C 0.09 2.70 3.95 31.79 0.13 2.83 16 17 H 0.05 1.64 8.05 -2.39 -0.02 1.62 16 18 O -0.58 -18.50 13.37 -148.98 -1.99 -20.50 16 19 C 0.14 5.27 3.32 45.86 0.15 5.42 16 20 H 0.05 1.92 8.01 -2.39 -0.02 1.91 16 21 N -0.73 -34.84 5.09 -318.83 -1.62 -36.46 16 22 C -0.24 -12.56 9.96 84.04 0.84 -11.72 16 23 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 25 N -0.97 -58.05 13.06 21.65 0.28 -57.77 16 26 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 30 C -0.09 -3.03 6.05 30.99 0.19 -2.84 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.04 0.80 7.05 -2.39 -0.02 0.78 16 34 H 0.10 1.31 6.33 -2.39 -0.02 1.30 16 35 H 0.05 0.81 8.12 -2.38 -0.02 0.79 16 36 H 0.07 1.02 5.41 -2.39 -0.01 1.00 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 41 H 0.07 1.23 6.30 -2.39 -0.02 1.21 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 1.96 7.99 -2.39 -0.02 1.94 16 45 H 0.12 1.96 7.37 -2.39 -0.02 1.94 16 46 H 0.10 1.72 7.35 -2.39 -0.02 1.70 16 47 H 0.10 2.04 5.82 -2.39 -0.01 2.03 16 48 H 0.38 11.98 9.11 -74.06 -0.67 11.31 16 49 H 0.37 19.50 7.52 -92.71 -0.70 18.80 16 50 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 51 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 52 H 0.05 1.88 7.41 -2.38 -0.02 1.86 16 Total: -1.00 -68.40 406.02 2.06 -66.34 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: -0.44 Total: 42.72 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.51 Total: 1.19 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -3.74 Total: -112.18 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -2.04 Total: -39.29 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.75 Total: -5.58 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.40 2.06 -66.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093424222.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.278 kcal (2) G-P(sol) polarization free energy of solvation -68.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds