Wall clock time and date at job start Wed Apr 1 2020 01:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47108 * 2 1 4 4 C 1.53008 * 109.46609 * 119.99233 * 2 1 3 5 5 H 1.09004 * 113.09132 * 42.41617 * 4 2 1 6 6 N 1.47814 * 113.83405 * 270.45737 * 4 2 1 7 7 C 1.34768 * 134.38155 * 89.56005 * 6 4 2 8 8 O 1.21281 * 120.00715 * 355.10713 * 7 6 4 9 9 C 1.50704 * 119.99576 * 175.11085 * 7 6 4 10 10 C 1.53000 * 109.47571 * 71.78792 * 9 7 6 11 11 C 1.53007 * 109.46977 * 191.78445 * 9 7 6 12 12 F 1.39901 * 109.47466 * 311.78229 * 9 7 6 13 13 C 1.47821 * 91.23249 * 269.55663 * 6 4 2 14 14 C 1.52734 * 85.72771 * 336.24088 * 13 6 4 15 15 C 1.53844 * 115.75906 * 140.40028 * 14 13 6 16 16 C 1.55105 * 102.66063 * 166.37744 * 15 14 13 17 17 H 1.09004 * 110.55932 * 82.12651 * 16 15 14 18 18 O 1.42899 * 110.45413 * 204.62975 * 16 15 14 19 19 C 1.54351 * 104.36721 * 323.35090 * 16 15 14 20 20 H 1.09000 * 110.07673 * 264.09777 * 19 16 15 21 21 N 1.46497 * 110.03594 * 142.68448 * 19 16 15 22 22 C 1.36935 * 120.00268 * 87.83997 * 21 19 16 23 23 H 1.08005 * 119.99500 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00515 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99394 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00200 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47019 * 60.00237 * 26 24 22 28 28 H 1.48502 * 109.47196 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47426 * 300.00268 * 26 24 22 30 30 C 1.53122 * 116.08807 * 265.01728 * 14 13 6 31 31 H 1.08994 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47560 * 300.00897 * 1 2 3 33 33 H 1.09004 * 109.46513 * 60.00315 * 1 2 3 34 34 H 1.08993 * 109.47486 * 239.99504 * 2 1 3 35 35 H 1.09003 * 109.46640 * 188.62097 * 3 2 1 36 36 H 1.09001 * 109.46994 * 308.61477 * 3 2 1 37 37 H 1.08998 * 109.47547 * 68.61597 * 3 2 1 38 38 H 1.08998 * 109.47250 * 59.99493 * 10 9 7 39 39 H 1.08993 * 109.47597 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.46283 * 299.99989 * 10 9 7 41 41 H 1.09000 * 109.47156 * 64.64937 * 11 9 7 42 42 H 1.08999 * 109.46996 * 184.65295 * 11 9 7 43 43 H 1.08998 * 109.46969 * 304.65309 * 11 9 7 44 44 H 1.08998 * 113.83054 * 222.03588 * 13 6 4 45 45 H 1.09003 * 113.82528 * 90.44286 * 13 6 4 46 46 H 1.09004 * 110.73191 * 48.09831 * 15 14 13 47 47 H 1.09000 * 110.95340 * 284.76220 * 15 14 13 48 48 H 0.96700 * 113.99940 * 176.40274 * 18 16 15 49 49 H 0.97001 * 119.99894 * 267.84223 * 21 19 16 50 50 H 0.97001 * 119.99202 * 179.97438 * 25 24 22 51 51 H 1.08994 * 110.09638 * 88.80226 * 30 14 13 52 52 H 1.08997 * 110.09988 * 327.24789 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.4844 -1.6317 1.4741 6 7 2.2288 0.1665 2.4162 7 6 1.4389 0.5713 3.4303 8 8 0.2691 0.2518 3.4527 9 6 2.0092 1.4211 4.5365 10 6 2.2832 2.8304 4.0076 11 6 1.0073 1.4955 5.6906 12 9 3.2039 0.8534 4.9921 13 6 3.6297 0.4331 2.0269 14 6 3.5565 -0.8992 1.2835 15 6 4.2541 -0.9392 -0.0871 16 6 4.3108 -2.4582 -0.3954 17 1 3.3622 -2.8005 -0.8093 18 8 5.3807 -2.7449 -1.2983 19 6 4.5706 -3.1179 0.9756 20 1 5.6368 -3.3034 1.1056 21 7 3.8267 -4.3760 1.0763 22 6 4.3879 -5.5411 0.6262 23 1 5.3791 -5.5326 0.1973 24 6 3.6834 -6.7333 0.7220 25 7 2.4756 -6.7436 1.2451 26 14 4.4493 -8.3228 0.1086 27 1 5.7053 -8.5874 0.8553 28 1 3.4999 -9.4445 0.3226 29 1 4.7512 -8.2000 -1.3402 30 6 4.0736 -2.1237 2.0437 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 3.1191 1.4463 -0.1541 36 1 1.5564 1.9988 -0.8030 37 1 1.8079 1.9100 0.9569 38 1 1.3524 3.2726 3.6527 39 1 2.6952 3.4451 4.8078 40 1 2.9969 2.7773 3.1854 41 1 0.8748 0.5029 6.1212 42 1 1.3832 2.1759 6.4547 43 1 0.0503 1.8606 5.3180 44 1 4.3272 0.4325 2.8644 45 1 3.7481 1.2967 1.3724 46 1 5.2583 -0.5202 -0.0214 47 1 3.6659 -0.4136 -0.8393 48 1 5.4976 -3.6869 -1.4831 49 1 2.9367 -4.3836 1.4618 50 1 1.9831 -7.5767 1.3118 51 1 3.2678 -2.5709 2.6257 52 1 4.8952 -1.8375 2.7003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093424232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:37 Heat of formation + Delta-G solvation = -91.718707 kcal Electronic energy + Delta-G solvation = -33079.826121 eV Core-core repulsion = 28802.114857 eV Total energy + Delta-G solvation = -4277.711264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.02608 -41.53378 -38.82461 -37.18312 -34.58331 -34.10258 -33.74889 -33.04322 -30.71774 -28.42196 -28.07023 -27.65557 -27.14429 -26.04552 -24.60445 -23.31955 -22.45024 -20.77720 -19.77498 -19.31817 -18.16132 -17.52810 -17.39207 -16.63760 -16.34803 -16.12545 -15.71752 -15.46441 -15.16219 -14.77729 -14.43931 -13.85360 -13.74627 -13.69565 -13.38595 -13.27039 -13.15655 -12.93956 -12.82487 -12.75885 -12.61258 -12.35192 -12.26075 -12.08861 -11.91481 -11.80786 -11.66198 -11.58693 -11.31633 -11.19240 -10.95017 -10.86021 -10.80128 -10.67628 -10.55144 -10.38973 -10.15682 -10.07427 -9.68840 -9.60989 -9.51756 -8.83015 -8.65081 -7.00877 -5.83261 -3.13358 2.39308 2.59735 3.39799 3.44883 3.45968 3.92414 4.16882 4.23028 4.32632 4.49086 4.52806 4.60596 4.72057 4.80635 4.90339 5.02170 5.13080 5.20052 5.21841 5.23295 5.33571 5.34949 5.42320 5.47192 5.53240 5.58666 5.65921 5.67165 5.72167 5.77938 5.79214 5.83310 5.85684 5.88524 5.93569 6.00541 6.02556 6.08396 6.18017 6.20763 6.29326 6.36277 6.43413 6.50799 6.65353 6.89650 7.60328 7.62200 7.96740 8.26853 8.34969 9.45854 10.03032 10.37107 11.38682 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.003470 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.696394 B = 8067.867418 C = 8643.567778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.151 4.151 4 C 0.155 3.845 5 H 0.097 0.903 6 N -0.620 5.620 7 C 0.520 3.480 8 O -0.525 6.525 9 C 0.107 3.893 10 C -0.170 4.170 11 C -0.159 4.159 12 F -0.194 7.194 13 C 0.098 3.902 14 C -0.085 4.085 15 C -0.106 4.106 16 C 0.081 3.919 17 H 0.062 0.938 18 O -0.576 6.576 19 C 0.146 3.854 20 H 0.060 0.940 21 N -0.721 5.721 22 C -0.250 4.250 23 H 0.070 0.930 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.285 1.285 30 C -0.102 4.102 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.382 0.618 49 H 0.384 0.616 50 H 0.257 0.743 51 H 0.073 0.927 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 21.863 1.942 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.208 4.208 4 C 0.052 3.948 5 H 0.115 0.885 6 N -0.353 5.353 7 C 0.307 3.693 8 O -0.401 6.401 9 C 0.085 3.915 10 C -0.228 4.228 11 C -0.216 4.216 12 F -0.174 7.174 13 C -0.024 4.024 14 C -0.086 4.086 15 C -0.144 4.144 16 C 0.019 3.981 17 H 0.080 0.920 18 O -0.383 6.383 19 C 0.035 3.965 20 H 0.078 0.922 21 N -0.362 5.362 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.737 3.263 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 C -0.141 4.141 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.230 0.770 49 H 0.218 0.782 50 H 0.067 0.933 51 H 0.092 0.908 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.278 22.209 2.122 22.312 hybrid contribution 0.073 -1.624 -0.065 1.627 sum -0.205 20.585 2.057 20.689 Atomic orbital electron populations 1.21813 0.94429 1.02373 1.01676 1.21321 0.96534 0.96439 0.97375 1.22103 1.01060 0.95912 1.01707 1.22729 0.95669 0.92304 0.84053 0.88453 1.50131 1.13771 1.47687 1.23760 1.20435 0.85926 0.80282 0.82701 1.90729 1.15767 1.55878 1.77766 1.21150 0.82753 0.93517 0.94052 1.22372 1.03842 0.93716 1.02873 1.22185 0.98925 1.04248 0.96284 1.92913 1.47779 1.86546 1.90209 1.23648 0.82247 0.98120 0.98399 1.22280 0.94518 0.95222 0.96545 1.22360 1.00715 0.96727 0.94618 1.23681 0.89681 0.93287 0.91472 0.92042 1.86252 1.54433 1.30769 1.66806 1.21634 0.96432 0.86730 0.91734 0.92163 1.42562 1.18150 1.01818 1.73629 1.19184 0.99380 0.85770 1.33763 0.91162 1.24756 0.96513 0.97820 1.01388 1.69655 1.11601 1.26498 1.49846 0.86291 0.78092 0.83377 0.78531 1.21228 1.21713 1.21161 1.22075 1.00875 0.93351 0.97749 0.92275 0.92299 0.92843 0.88953 0.91801 0.92741 0.92654 0.90166 0.90121 0.90888 0.90752 0.90801 0.89700 0.89483 0.88485 0.90307 0.90653 0.76952 0.78156 0.93334 0.90824 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.17 37.16 0.34 -1.43 16 2 C -0.10 -1.13 2.39 -90.61 -0.22 -1.34 16 3 C -0.15 -1.42 7.37 37.16 0.27 -1.15 16 4 C 0.15 2.10 3.83 -67.34 -0.26 1.84 16 5 H 0.10 1.61 8.00 -51.93 -0.42 1.19 16 6 N -0.62 -7.92 2.32 -176.91 -0.41 -8.33 16 7 C 0.52 7.24 6.97 -10.99 -0.08 7.16 16 8 O -0.53 -8.97 16.33 5.56 0.09 -8.88 16 9 C 0.11 1.17 1.36 -91.77 -0.13 1.05 16 10 C -0.17 -1.32 8.90 37.16 0.33 -0.99 16 11 C -0.16 -1.57 8.39 37.16 0.31 -1.26 16 12 F -0.19 -2.41 15.63 2.25 0.04 -2.38 16 13 C 0.10 1.04 5.84 -3.46 -0.02 1.02 16 14 C -0.08 -1.09 0.84 -154.46 -0.13 -1.22 16 15 C -0.11 -1.37 5.11 -25.18 -0.13 -1.50 16 16 C 0.08 1.36 3.95 -24.91 -0.10 1.26 16 17 H 0.06 1.15 8.05 -51.93 -0.42 0.74 16 18 O -0.58 -9.94 13.37 -35.23 -0.47 -10.41 16 19 C 0.15 2.73 3.32 -66.62 -0.22 2.50 16 20 H 0.06 1.19 8.01 -51.93 -0.42 0.78 16 21 N -0.72 -17.07 5.08 -52.15 -0.27 -17.34 16 22 C -0.25 -6.56 9.96 -15.06 -0.15 -6.71 16 23 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 26 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 C -0.10 -1.62 6.02 -26.06 -0.16 -1.78 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.80 7.86 -51.93 -0.41 0.39 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.07 6.51 -51.93 -0.34 0.74 16 35 H 0.06 0.54 5.06 -51.93 -0.26 0.27 16 36 H 0.05 0.47 8.13 -51.93 -0.42 0.05 16 37 H 0.05 0.55 6.72 -51.93 -0.35 0.20 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.53 7.21 -51.93 -0.37 0.16 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.83 7.80 -51.93 -0.41 0.42 16 44 H 0.09 0.91 7.22 -51.93 -0.37 0.54 16 45 H 0.10 0.82 5.12 -51.93 -0.27 0.56 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.08 0.88 4.85 -51.93 -0.25 0.63 16 48 H 0.38 6.30 9.11 45.56 0.41 6.72 16 49 H 0.38 9.89 7.52 -40.82 -0.31 9.59 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 51 H 0.07 1.34 7.36 -51.93 -0.38 0.96 16 52 H 0.07 1.03 8.02 -51.93 -0.42 0.61 16 LS Contribution 401.28 15.07 6.05 6.05 Total: -1.00 -31.16 401.28 -7.59 -38.75 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -7.90 Total: 15.36 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.42 Total: -2.86 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.05 Total: -52.36 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.38 Total: -19.29 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.16 -7.59 -38.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093424232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.972 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds