Wall clock time and date at job start Wed Apr 1 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47108 * 2 1 4 4 C 1.53008 * 109.46609 * 119.99233 * 2 1 3 5 5 H 1.09004 * 113.09132 * 42.41617 * 4 2 1 6 6 N 1.47814 * 113.83405 * 270.45737 * 4 2 1 7 7 C 1.34768 * 134.38155 * 89.56005 * 6 4 2 8 8 O 1.21281 * 120.00715 * 355.10713 * 7 6 4 9 9 C 1.50704 * 119.99576 * 175.11085 * 7 6 4 10 10 C 1.53000 * 109.47571 * 71.78792 * 9 7 6 11 11 C 1.53007 * 109.46977 * 191.78445 * 9 7 6 12 12 F 1.39901 * 109.47466 * 311.78229 * 9 7 6 13 13 C 1.47821 * 91.23249 * 269.55663 * 6 4 2 14 14 C 1.52734 * 85.72771 * 336.24088 * 13 6 4 15 15 C 1.53844 * 115.75906 * 140.40028 * 14 13 6 16 16 C 1.55105 * 102.66063 * 166.37744 * 15 14 13 17 17 H 1.09004 * 110.55932 * 82.12651 * 16 15 14 18 18 O 1.42899 * 110.45413 * 204.62975 * 16 15 14 19 19 C 1.54351 * 104.36721 * 323.35090 * 16 15 14 20 20 H 1.09000 * 110.07673 * 264.09777 * 19 16 15 21 21 N 1.46497 * 110.03594 * 142.68448 * 19 16 15 22 22 C 1.36935 * 120.00268 * 87.83997 * 21 19 16 23 23 H 1.08005 * 119.99500 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00515 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99394 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00200 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47019 * 60.00237 * 26 24 22 28 28 H 1.48502 * 109.47196 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47426 * 300.00268 * 26 24 22 30 30 C 1.53122 * 116.08807 * 265.01728 * 14 13 6 31 31 H 1.08994 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47560 * 300.00897 * 1 2 3 33 33 H 1.09004 * 109.46513 * 60.00315 * 1 2 3 34 34 H 1.08993 * 109.47486 * 239.99504 * 2 1 3 35 35 H 1.09003 * 109.46640 * 188.62097 * 3 2 1 36 36 H 1.09001 * 109.46994 * 308.61477 * 3 2 1 37 37 H 1.08998 * 109.47547 * 68.61597 * 3 2 1 38 38 H 1.08998 * 109.47250 * 59.99493 * 10 9 7 39 39 H 1.08993 * 109.47597 * 179.97438 * 10 9 7 40 40 H 1.09001 * 109.46283 * 299.99989 * 10 9 7 41 41 H 1.09000 * 109.47156 * 64.64937 * 11 9 7 42 42 H 1.08999 * 109.46996 * 184.65295 * 11 9 7 43 43 H 1.08998 * 109.46969 * 304.65309 * 11 9 7 44 44 H 1.08998 * 113.83054 * 222.03588 * 13 6 4 45 45 H 1.09003 * 113.82528 * 90.44286 * 13 6 4 46 46 H 1.09004 * 110.73191 * 48.09831 * 15 14 13 47 47 H 1.09000 * 110.95340 * 284.76220 * 15 14 13 48 48 H 0.96700 * 113.99940 * 176.40274 * 18 16 15 49 49 H 0.97001 * 119.99894 * 267.84223 * 21 19 16 50 50 H 0.97001 * 119.99202 * 179.97438 * 25 24 22 51 51 H 1.08994 * 110.09638 * 88.80226 * 30 14 13 52 52 H 1.08997 * 110.09988 * 327.24789 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.4844 -1.6317 1.4741 6 7 2.2288 0.1665 2.4162 7 6 1.4389 0.5713 3.4303 8 8 0.2691 0.2518 3.4527 9 6 2.0092 1.4211 4.5365 10 6 2.2832 2.8304 4.0076 11 6 1.0073 1.4955 5.6906 12 9 3.2039 0.8534 4.9921 13 6 3.6297 0.4331 2.0269 14 6 3.5565 -0.8992 1.2835 15 6 4.2541 -0.9392 -0.0871 16 6 4.3108 -2.4582 -0.3954 17 1 3.3622 -2.8005 -0.8093 18 8 5.3807 -2.7449 -1.2983 19 6 4.5706 -3.1179 0.9756 20 1 5.6368 -3.3034 1.1056 21 7 3.8267 -4.3760 1.0763 22 6 4.3879 -5.5411 0.6262 23 1 5.3791 -5.5326 0.1973 24 6 3.6834 -6.7333 0.7220 25 7 2.4756 -6.7436 1.2451 26 14 4.4493 -8.3228 0.1086 27 1 5.7053 -8.5874 0.8553 28 1 3.4999 -9.4445 0.3226 29 1 4.7512 -8.2000 -1.3402 30 6 4.0736 -2.1237 2.0437 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 3.1191 1.4463 -0.1541 36 1 1.5564 1.9988 -0.8030 37 1 1.8079 1.9100 0.9569 38 1 1.3524 3.2726 3.6527 39 1 2.6952 3.4451 4.8078 40 1 2.9969 2.7773 3.1854 41 1 0.8748 0.5029 6.1212 42 1 1.3832 2.1759 6.4547 43 1 0.0503 1.8606 5.3180 44 1 4.3272 0.4325 2.8644 45 1 3.7481 1.2967 1.3724 46 1 5.2583 -0.5202 -0.0214 47 1 3.6659 -0.4136 -0.8393 48 1 5.4976 -3.6869 -1.4831 49 1 2.9367 -4.3836 1.4618 50 1 1.9831 -7.5767 1.3118 51 1 3.2678 -2.5709 2.6257 52 1 4.8952 -1.8375 2.7003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093424232.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:35 Heat of formation + Delta-G solvation = -112.649962 kcal Electronic energy + Delta-G solvation = -33080.733769 eV Core-core repulsion = 28802.114857 eV Total energy + Delta-G solvation = -4278.618911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.94300 -42.61847 -39.98741 -38.54040 -36.08783 -35.28158 -34.76654 -34.37198 -32.48404 -29.64519 -29.21811 -28.53175 -28.12987 -27.08582 -26.08689 -24.86474 -23.59818 -21.81168 -21.16659 -20.36351 -19.38995 -19.17991 -18.52237 -17.93771 -17.44146 -17.29260 -16.89050 -16.47235 -16.31517 -16.08783 -15.83374 -15.37144 -15.09405 -14.80550 -14.65141 -14.44091 -14.32402 -14.18665 -13.80010 -13.45939 -13.39016 -13.33771 -13.17864 -13.12441 -13.07712 -12.93260 -12.89895 -12.75819 -12.70390 -12.58306 -12.40475 -12.23638 -12.02008 -11.88121 -11.82529 -11.70516 -11.61464 -11.57820 -11.31346 -11.05195 -10.66909 -10.62166 -9.69838 -8.98626 -7.95430 -5.24752 1.34278 1.47353 1.49646 1.55516 1.59846 2.54859 2.97280 3.12801 3.33226 3.42756 3.44401 3.49666 3.66087 3.71136 3.75961 3.87035 3.89368 3.99325 4.13013 4.30317 4.41041 4.43936 4.48283 4.53170 4.56462 4.58070 4.62539 4.64606 4.65687 4.76141 4.78359 4.79796 4.88445 4.92795 4.96809 4.99030 5.02351 5.04754 5.08384 5.12680 5.18738 5.23476 5.28305 5.36194 5.40294 5.48074 5.50164 6.25038 6.60305 6.86745 6.90093 7.31494 8.06774 8.29696 9.27790 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013454 B = 0.003470 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.696394 B = 8067.867418 C = 8643.567778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.146 4.146 4 C 0.148 3.852 5 H 0.051 0.949 6 N -0.619 5.619 7 C 0.509 3.491 8 O -0.569 6.569 9 C 0.106 3.894 10 C -0.164 4.164 11 C -0.158 4.158 12 F -0.202 7.202 13 C 0.111 3.889 14 C -0.078 4.078 15 C -0.090 4.090 16 C 0.085 3.915 17 H 0.037 0.963 18 O -0.575 6.575 19 C 0.140 3.860 20 H 0.054 0.946 21 N -0.734 5.734 22 C -0.242 4.242 23 H 0.083 0.917 24 C -0.074 4.074 25 N -0.971 5.971 26 Si 0.971 3.029 27 H -0.279 1.279 28 H -0.302 1.302 29 H -0.273 1.273 30 C -0.096 4.096 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.134 0.866 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.383 0.617 49 H 0.369 0.631 50 H 0.249 0.751 51 H 0.041 0.959 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 25.179 0.963 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.203 4.203 4 C 0.045 3.955 5 H 0.070 0.930 6 N -0.352 5.352 7 C 0.297 3.703 8 O -0.449 6.449 9 C 0.085 3.915 10 C -0.222 4.222 11 C -0.216 4.216 12 F -0.183 7.183 13 C -0.010 4.010 14 C -0.079 4.079 15 C -0.128 4.128 16 C 0.023 3.977 17 H 0.055 0.945 18 O -0.382 6.382 19 C 0.031 3.969 20 H 0.072 0.928 21 N -0.373 5.373 22 C -0.373 4.373 23 H 0.101 0.899 24 C -0.266 4.266 25 N -0.622 5.622 26 Si 0.800 3.200 27 H -0.205 1.205 28 H -0.229 1.229 29 H -0.199 1.199 30 C -0.134 4.134 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.115 0.885 45 H 0.152 0.848 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.232 0.768 49 H 0.200 0.800 50 H 0.058 0.942 51 H 0.059 0.941 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.181 25.575 1.118 25.692 hybrid contribution -0.664 -2.678 0.260 2.771 sum 1.517 22.897 1.378 22.988 Atomic orbital electron populations 1.21769 0.95316 1.01003 1.01804 1.21309 0.95807 0.98131 0.95995 1.22082 1.02279 0.93675 1.02259 1.22708 0.95704 0.91494 0.85609 0.93025 1.50218 1.14675 1.47039 1.23296 1.21132 0.85603 0.80167 0.83361 1.90704 1.17782 1.57638 1.78750 1.21297 0.82393 0.94608 0.93209 1.22393 1.04637 0.91248 1.03894 1.22211 0.98983 1.03710 0.96682 1.92894 1.48207 1.86964 1.90223 1.23821 0.80869 0.97494 0.98784 1.22127 0.93797 0.95347 0.96607 1.22333 1.02255 0.93598 0.94612 1.23492 0.88515 0.95994 0.89659 0.94541 1.86257 1.54254 1.31002 1.66690 1.21878 0.95384 0.85601 0.94004 0.92775 1.42771 1.17837 1.03188 1.73544 1.19639 0.99458 0.86523 1.31689 0.89912 1.25553 0.97126 1.01127 1.02811 1.69837 1.13315 1.26589 1.52444 0.85247 0.76979 0.79215 0.78529 1.20531 1.22876 1.19868 1.21951 1.00337 0.94026 0.97134 0.94485 0.94025 0.90677 0.88694 0.89846 0.91243 0.92867 0.89511 0.87917 0.89875 0.92930 0.87934 0.89818 0.88476 0.84828 0.88149 0.88442 0.76839 0.79961 0.94242 0.94051 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.17 71.98 0.66 -2.83 16 2 C -0.09 -2.04 2.39 -10.79 -0.03 -2.07 16 3 C -0.15 -2.20 7.37 71.98 0.53 -1.67 16 4 C 0.15 4.05 3.83 44.66 0.17 4.22 16 5 H 0.05 1.88 8.00 -2.38 -0.02 1.86 16 6 N -0.62 -15.34 2.32 -832.01 -1.93 -17.27 16 7 C 0.51 14.16 6.97 87.66 0.61 14.78 16 8 O -0.57 -20.38 16.33 -3.03 -0.05 -20.43 16 9 C 0.11 2.18 1.36 -11.54 -0.02 2.16 16 10 C -0.16 -1.99 8.90 71.98 0.64 -1.35 16 11 C -0.16 -3.01 8.39 71.98 0.60 -2.41 16 12 F -0.20 -4.68 15.63 44.97 0.70 -3.98 16 13 C 0.11 2.00 5.84 86.04 0.50 2.50 16 14 C -0.08 -1.88 0.84 -51.97 -0.04 -1.92 16 15 C -0.09 -2.05 5.11 31.60 0.16 -1.89 16 16 C 0.09 2.79 3.95 31.77 0.13 2.91 16 17 H 0.04 1.39 8.05 -2.38 -0.02 1.37 16 18 O -0.58 -18.86 13.37 -148.98 -1.99 -20.85 16 19 C 0.14 5.28 3.32 45.84 0.15 5.43 16 20 H 0.05 2.11 8.01 -2.39 -0.02 2.09 16 21 N -0.73 -36.08 5.08 -318.92 -1.62 -37.70 16 22 C -0.24 -12.89 9.96 84.03 0.84 -12.06 16 23 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 24 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 25 N -0.97 -59.86 13.06 21.65 0.28 -59.58 16 26 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 29 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 30 C -0.10 -3.07 6.02 31.03 0.19 -2.88 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.04 1.16 7.86 -2.39 -0.02 1.14 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 2.04 6.51 -2.39 -0.02 2.03 16 35 H 0.08 0.94 5.06 -2.39 -0.01 0.92 16 36 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 37 H 0.05 0.86 6.72 -2.39 -0.02 0.84 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.84 7.21 -2.39 -0.02 0.83 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.61 7.80 -2.39 -0.02 1.59 16 44 H 0.10 1.66 7.22 -2.39 -0.02 1.64 16 45 H 0.13 1.52 5.12 -2.39 -0.01 1.51 16 46 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 47 H 0.10 1.88 4.85 -2.39 -0.01 1.87 16 48 H 0.38 12.27 9.11 -74.06 -0.67 11.59 16 49 H 0.37 20.22 7.52 -92.71 -0.70 19.53 16 50 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 51 H 0.04 1.60 7.36 -2.39 -0.02 1.58 16 52 H 0.09 2.44 8.02 -2.39 -0.02 2.42 16 Total: -1.00 -72.06 401.28 2.55 -69.51 By element: Atomic # 1 Polarization: 43.96 SS G_CDS: -0.43 Total: 43.52 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 5.56 Total: -0.80 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -3.27 Total: -114.56 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -2.04 Total: -41.28 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.70 Total: -3.98 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -72.06 2.55 -69.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093424232.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.144 kcal (2) G-P(sol) polarization free energy of solvation -72.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds