Wall clock time and date at job start Wed Apr 1 2020 02:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46841 * 2 1 4 4 C 1.52994 * 109.47320 * 120.00072 * 2 1 3 5 5 H 1.09000 * 109.47109 * 306.20664 * 4 2 1 6 6 F 1.39902 * 109.47268 * 186.20368 * 4 2 1 7 7 C 1.50706 * 109.46842 * 66.20260 * 4 2 1 8 8 O 1.21280 * 120.00034 * 44.21806 * 7 4 2 9 9 N 1.34775 * 119.99894 * 224.20745 * 7 4 2 10 10 C 1.46503 * 119.99880 * 179.97438 * 9 7 4 11 11 H 1.08999 * 109.49262 * 35.00730 * 10 9 7 12 12 C 1.53186 * 109.49876 * 274.94329 * 10 9 7 13 13 N 1.46934 * 108.78761 * 185.33311 * 12 10 9 14 14 C 1.36935 * 120.64259 * 233.69006 * 13 12 10 15 15 H 1.07997 * 120.00472 * 149.85789 * 14 13 12 16 16 C 1.38821 * 119.99942 * 329.85386 * 14 13 12 17 17 N 1.31622 * 119.99742 * 344.20160 * 16 14 13 18 18 Si 1.86795 * 119.99971 * 164.19396 * 16 14 13 19 19 H 1.48500 * 109.47030 * 90.00403 * 18 16 14 20 20 H 1.48501 * 109.47421 * 210.00057 * 18 16 14 21 21 H 1.48501 * 109.47259 * 330.00419 * 18 16 14 22 22 C 1.46940 * 118.71644 * 53.67111 * 13 12 10 23 23 C 1.53101 * 108.78209 * 306.49613 * 22 13 12 24 24 C 1.53084 * 109.47731 * 294.29650 * 23 22 13 25 25 C 1.53119 * 109.16130 * 297.02321 * 24 23 22 26 26 O 1.42897 * 109.40159 * 302.51403 * 25 24 23 27 27 C 1.42903 * 114.13901 * 61.17760 * 26 25 24 28 28 C 1.53086 * 109.46807 * 174.62737 * 23 22 13 29 29 C 1.52926 * 109.50140 * 54.46222 * 23 22 13 30 30 H 1.08997 * 109.47002 * 299.99647 * 1 2 3 31 31 H 1.09000 * 109.47623 * 59.99659 * 1 2 3 32 32 H 1.08997 * 109.47045 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46579 * 240.00402 * 2 1 3 34 34 H 1.08997 * 109.46973 * 184.86061 * 3 2 1 35 35 H 1.08999 * 109.47083 * 304.85698 * 3 2 1 36 36 H 1.09000 * 109.47208 * 64.86074 * 3 2 1 37 37 H 0.97001 * 120.00073 * 0.02562 * 9 7 4 38 38 H 1.08996 * 109.58313 * 305.12229 * 12 10 9 39 39 H 1.08997 * 109.58438 * 65.54363 * 12 10 9 40 40 H 0.97001 * 119.99329 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.58321 * 66.28269 * 22 13 12 42 42 H 1.08997 * 109.58451 * 186.70769 * 22 13 12 43 43 H 1.09003 * 109.51926 * 56.92576 * 24 23 22 44 44 H 1.09001 * 109.52620 * 177.11554 * 24 23 22 45 45 H 1.09001 * 109.48257 * 182.53532 * 25 24 23 46 46 H 1.08996 * 109.47921 * 62.49416 * 25 24 23 47 47 H 1.08999 * 109.48876 * 178.83228 * 27 26 25 48 48 H 1.09001 * 109.48152 * 58.79142 * 27 26 25 49 49 H 1.08999 * 109.52389 * 182.87542 * 28 23 22 50 50 H 1.08993 * 109.52580 * 303.01101 * 28 23 22 51 51 H 1.08993 * 109.45816 * 178.81044 * 29 23 22 52 52 H 1.09001 * 109.45930 * 58.86351 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5889 -0.2756 2.1357 6 9 3.4318 -0.5991 1.3227 7 6 1.6670 -2.1795 1.1747 8 8 1.8167 -2.7916 0.1385 9 7 1.1672 -2.8034 2.2598 10 6 0.8039 -4.2208 2.1873 11 1 1.4995 -4.7413 1.5289 12 6 -0.6194 -4.3565 1.6374 13 7 -1.0147 -5.7706 1.6911 14 6 -1.4736 -6.4101 0.5706 15 1 -1.3077 -7.4701 0.4476 16 6 -2.1521 -5.6958 -0.4074 17 7 -2.6276 -4.4986 -0.1372 18 14 -2.3900 -6.4335 -2.1069 19 1 -3.6598 -7.2028 -2.1392 20 1 -2.4449 -5.3452 -3.1158 21 1 -1.2546 -7.3391 -2.4169 22 6 -0.9077 -6.4855 2.9704 23 6 0.5168 -6.3237 3.5078 24 6 1.4989 -7.0333 2.5722 25 6 1.1878 -8.5325 2.5603 26 8 1.2639 -9.0436 3.8926 27 6 0.3331 -8.4504 4.8002 28 6 0.6098 -6.9479 4.9026 29 6 0.8669 -4.8372 3.5869 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1264 1.4438 -0.0871 35 1 1.6073 1.9808 -0.8433 36 1 1.7495 1.9306 0.9303 37 1 1.0472 -2.3138 3.0885 38 1 -1.3034 -3.7626 2.2436 39 1 -0.6468 -4.0084 0.6048 40 1 -3.1014 -3.9993 -0.8207 41 1 -1.6171 -6.0660 3.6837 42 1 -1.1225 -7.5430 2.8171 43 1 1.3961 -6.6319 1.5640 44 1 2.5178 -6.8755 2.9260 45 1 1.9124 -9.0491 1.9308 46 1 0.1843 -8.6923 2.1663 47 1 0.4419 -8.9079 5.7834 48 1 -0.6818 -8.6091 4.4355 49 1 1.6093 -6.7884 5.3071 50 1 -0.1270 -6.4848 5.5588 51 1 1.8732 -4.7221 3.9894 52 1 0.1552 -4.3307 4.2389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099588771.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:22 Heat of formation + Delta-G solvation = -146.850980 kcal Electronic energy + Delta-G solvation = -32971.280359 eV Core-core repulsion = 28691.178381 eV Total energy + Delta-G solvation = -4280.101979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.96680 -41.58626 -40.55518 -38.41351 -36.50438 -35.88771 -35.35544 -32.83427 -31.95821 -31.55371 -28.72537 -28.20962 -27.90482 -27.35648 -24.72600 -24.46882 -23.63113 -22.55804 -21.59896 -21.16261 -19.48815 -18.91332 -18.51123 -17.73520 -17.38105 -16.99593 -16.85442 -16.73225 -16.19794 -16.00022 -15.85436 -15.65811 -15.47631 -15.29668 -15.15799 -14.76064 -14.49692 -14.13993 -14.01710 -13.75177 -13.66832 -13.49012 -13.36114 -13.08209 -13.05802 -12.96751 -12.80199 -12.49797 -12.38066 -12.27266 -12.15785 -12.13643 -12.07877 -12.04369 -11.87091 -11.66283 -11.63335 -11.10739 -10.91751 -10.81647 -10.56050 -10.24229 -10.17054 -8.65019 -7.90410 -5.36637 1.36980 1.39970 1.42605 1.49405 1.93668 2.46451 3.02703 3.25594 3.27984 3.43899 3.59388 3.64411 3.75100 3.79360 3.86867 3.93728 4.14347 4.19913 4.22379 4.32915 4.38186 4.39570 4.47980 4.49247 4.51446 4.59159 4.73710 4.76167 4.80754 4.85201 4.87255 4.90366 4.94077 4.97000 5.05431 5.10941 5.13203 5.20877 5.25367 5.27693 5.31310 5.34557 5.39450 5.42262 5.50706 5.61323 5.73834 6.32576 6.35018 6.46355 7.10474 7.16215 7.83271 8.33720 9.14120 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.004575 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.034201 B = 6118.148898 C = 8291.982390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.138 4.138 4 C 0.094 3.906 5 H 0.142 0.858 6 F -0.198 7.198 7 C 0.484 3.516 8 O -0.570 6.570 9 N -0.699 5.699 10 C 0.127 3.873 11 H 0.056 0.944 12 C 0.184 3.816 13 N -0.598 5.598 14 C -0.257 4.257 15 H 0.063 0.937 16 C -0.042 4.042 17 N -0.924 5.924 18 Si 0.951 3.049 19 H -0.278 1.278 20 H -0.298 1.298 21 H -0.275 1.275 22 C 0.153 3.847 23 C -0.067 4.067 24 C -0.131 4.131 25 C 0.066 3.934 26 O -0.397 6.397 27 C 0.054 3.946 28 C -0.131 4.131 29 C -0.096 4.096 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.416 0.584 38 H 0.003 0.997 39 H 0.041 0.959 40 H 0.247 0.753 41 H 0.020 0.980 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.094 0.906 46 H 0.040 0.960 47 H 0.116 0.884 48 H 0.045 0.955 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.082 0.918 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 7.059 12.071 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.195 4.195 4 C 0.055 3.945 5 H 0.160 0.840 6 F -0.179 7.179 7 C 0.268 3.732 8 O -0.449 6.449 9 N -0.351 5.351 10 C 0.021 3.979 11 H 0.074 0.926 12 C 0.057 3.943 13 N -0.320 5.320 14 C -0.387 4.387 15 H 0.080 0.920 16 C -0.238 4.238 17 N -0.569 5.569 18 Si 0.780 3.220 19 H -0.205 1.205 20 H -0.225 1.225 21 H -0.200 1.200 22 C 0.028 3.972 23 C -0.069 4.069 24 C -0.169 4.169 25 C -0.010 4.010 26 O -0.316 6.316 27 C -0.022 4.022 28 C -0.169 4.169 29 C -0.133 4.133 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.113 0.887 46 H 0.058 0.942 47 H 0.134 0.866 48 H 0.063 0.937 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.100 0.900 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.431 6.560 11.294 15.546 hybrid contribution -0.718 -0.015 -1.411 1.584 sum 7.713 6.545 9.883 14.142 Atomic orbital electron populations 1.21762 0.93257 1.01055 1.04080 1.21581 0.97345 0.98363 0.95998 1.21773 1.01393 0.92426 1.03934 1.21850 0.77223 0.91496 1.03975 0.84011 1.92840 1.30722 1.96500 1.97799 1.21580 0.77449 0.90475 0.83656 1.90741 1.54516 1.68238 1.31357 1.45975 1.63299 1.11866 1.13926 1.21630 0.97536 0.80178 0.98547 0.92577 1.20720 0.89845 0.84953 0.98783 1.44037 1.74246 1.08148 1.05589 1.19310 1.28445 0.93735 0.97259 0.91973 1.25697 0.97818 0.97856 1.02464 1.70129 1.39630 1.13995 1.33147 0.85523 0.78141 0.77357 0.80995 1.20472 1.22477 1.20010 1.21195 0.93539 0.95791 0.86708 1.20916 0.95862 0.94412 0.95755 1.22035 0.98889 0.95889 1.00071 1.22505 1.00965 0.93729 0.83840 1.87841 1.60154 1.63657 1.19928 1.22774 0.92150 0.93133 0.94174 1.22125 1.03746 0.95861 0.95143 1.21654 1.02663 0.94883 0.94146 0.89603 0.90911 0.95724 0.92020 0.92217 0.90842 0.90146 0.74651 0.97889 0.94001 0.94429 0.96183 0.92924 0.92904 0.91233 0.88741 0.94184 0.86621 0.93687 0.89943 0.89178 0.89973 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.02 71.98 0.65 -3.03 16 2 C -0.11 -2.83 2.61 -10.79 -0.03 -2.86 16 3 C -0.14 -2.41 8.93 71.98 0.64 -1.77 16 4 C 0.09 2.32 3.35 29.85 0.10 2.42 16 5 H 0.14 2.22 8.00 -2.39 -0.02 2.20 16 6 F -0.20 -5.31 16.40 44.97 0.74 -4.58 16 7 C 0.48 16.63 6.19 87.66 0.54 17.17 16 8 O -0.57 -26.29 16.03 -3.03 -0.05 -26.34 16 9 N -0.70 -21.11 5.08 -442.13 -2.25 -23.35 16 10 C 0.13 4.69 2.27 45.07 0.10 4.79 16 11 H 0.06 2.46 5.87 -2.39 -0.01 2.45 16 12 C 0.18 8.71 4.86 86.36 0.42 9.13 16 13 N -0.60 -28.97 2.39 -699.24 -1.67 -30.64 16 14 C -0.26 -14.11 9.57 84.04 0.80 -13.31 16 15 H 0.06 3.36 7.88 -2.91 -0.02 3.33 16 16 C -0.04 -2.39 4.93 84.86 0.42 -1.98 16 17 N -0.92 -55.11 11.28 21.65 0.24 -54.87 16 18 Si 0.95 46.70 29.58 68.60 2.03 48.73 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 21 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 22 C 0.15 5.87 4.60 86.33 0.40 6.27 16 23 C -0.07 -2.02 0.52 -52.12 -0.03 -2.05 16 24 C -0.13 -4.28 4.37 30.66 0.13 -4.15 16 25 C 0.07 2.08 6.57 72.02 0.47 2.55 16 26 O -0.40 -11.54 10.76 -148.98 -1.60 -13.15 16 27 C 0.05 1.28 6.57 72.02 0.47 1.75 16 28 C -0.13 -2.95 4.92 30.66 0.15 -2.80 16 29 C -0.10 -2.68 4.19 30.59 0.13 -2.55 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.02 0.83 7.42 -2.39 -0.02 0.82 16 33 H 0.06 1.93 7.70 -2.39 -0.02 1.92 16 34 H 0.06 1.07 7.82 -2.39 -0.02 1.06 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.42 8.69 8.50 -92.71 -0.79 7.90 16 38 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.04 2.41 6.18 -2.39 -0.01 2.40 16 40 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 42 H 0.05 2.06 4.84 -2.39 -0.01 2.05 16 43 H 0.05 2.13 6.11 -2.39 -0.01 2.12 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.04 1.41 6.48 -2.39 -0.02 1.39 16 47 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.04 1.15 6.74 -2.39 -0.02 1.13 16 49 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -73.80 394.00 2.95 -70.85 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.13 Total: 23.74 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 5.38 Total: 9.60 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -3.67 Total: -108.86 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.65 Total: -39.48 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.74 Total: -4.58 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -73.80 2.95 -70.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099588771.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.002 kcal (2) G-P(sol) polarization free energy of solvation -73.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds