Wall clock time and date at job start Wed Apr 1 2020 02:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47019 * 2 1 4 4 C 1.53001 * 109.46968 * 119.99500 * 2 1 3 5 5 H 1.09001 * 109.47396 * 298.70843 * 4 2 1 6 6 F 1.39906 * 109.46822 * 178.70466 * 4 2 1 7 7 C 1.50704 * 109.46724 * 58.71089 * 4 2 1 8 8 O 1.21277 * 120.00523 * 71.24206 * 7 4 2 9 9 N 1.34777 * 119.99462 * 251.23915 * 7 4 2 10 10 C 1.46500 * 119.99931 * 179.97438 * 9 7 4 11 11 H 1.09002 * 109.49772 * 325.07134 * 10 9 7 12 12 C 1.53201 * 109.49665 * 85.17049 * 10 9 7 13 13 N 1.46932 * 108.77650 * 174.65521 * 12 10 9 14 14 C 1.36942 * 120.63095 * 126.31295 * 13 12 10 15 15 H 1.07999 * 120.00339 * 333.55990 * 14 13 12 16 16 C 1.38812 * 119.99671 * 153.56691 * 14 13 12 17 17 N 1.31617 * 120.00238 * 342.47924 * 16 14 13 18 18 Si 1.86803 * 120.00138 * 162.47984 * 16 14 13 19 19 H 1.48501 * 109.47300 * 89.99484 * 18 16 14 20 20 H 1.48498 * 109.47412 * 209.99988 * 18 16 14 21 21 H 1.48505 * 109.46833 * 329.99870 * 18 16 14 22 22 C 1.46937 * 118.73313 * 306.33677 * 13 12 10 23 23 C 1.53089 * 108.80094 * 53.46889 * 22 13 12 24 24 C 1.53083 * 109.50457 * 65.74244 * 23 22 13 25 25 C 1.53115 * 109.16170 * 176.73370 * 24 23 22 26 26 O 1.42898 * 109.40611 * 302.51873 * 25 24 23 27 27 C 1.42903 * 114.12867 * 61.19099 * 26 25 24 28 28 C 1.53079 * 109.50262 * 185.45324 * 23 22 13 29 29 C 1.52950 * 109.49853 * 305.58924 * 23 22 13 30 30 H 1.09000 * 109.47410 * 300.00400 * 1 2 3 31 31 H 1.09005 * 109.46922 * 60.00116 * 1 2 3 32 32 H 1.08999 * 109.47228 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47366 * 240.00165 * 2 1 3 34 34 H 1.09001 * 109.47376 * 184.95398 * 3 2 1 35 35 H 1.09005 * 109.47259 * 304.95745 * 3 2 1 36 36 H 1.08996 * 109.47365 * 64.95425 * 3 2 1 37 37 H 0.96998 * 120.00252 * 359.97438 * 9 7 4 38 38 H 1.08999 * 109.58798 * 294.44343 * 12 10 9 39 39 H 1.08994 * 109.58098 * 54.72974 * 12 10 9 40 40 H 0.97001 * 120.00468 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.57823 * 293.68249 * 22 13 12 42 42 H 1.08992 * 109.58835 * 173.26738 * 22 13 12 43 43 H 1.08997 * 109.52337 * 296.63507 * 24 23 22 44 44 H 1.08993 * 109.52360 * 56.82763 * 24 23 22 45 45 H 1.09001 * 109.47891 * 182.53878 * 25 24 23 46 46 H 1.08998 * 109.48294 * 62.50041 * 25 24 23 47 47 H 1.09005 * 109.48504 * 178.82850 * 27 26 25 48 48 H 1.08999 * 109.48484 * 58.77448 * 27 26 25 49 49 H 1.09001 * 109.52244 * 303.15500 * 28 23 22 50 50 H 1.09006 * 109.52243 * 63.34728 * 28 23 22 51 51 H 1.08999 * 109.45417 * 181.17839 * 29 23 22 52 52 H 1.09002 * 109.45157 * 301.13754 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6957 -0.1941 2.1391 6 9 3.4387 -0.7470 1.2345 7 6 1.5116 -2.1324 1.2654 8 8 1.9390 -2.9491 0.4772 9 7 0.5641 -2.4871 2.1559 10 6 0.0501 -3.8588 2.1713 11 1 0.0171 -4.2464 1.1531 12 6 0.9681 -4.7394 3.0250 13 7 0.3712 -6.0774 3.1356 14 6 1.0913 -7.1927 2.7994 15 1 1.8936 -7.1209 2.0801 16 6 0.7899 -8.4154 3.3833 17 7 0.0722 -8.4592 4.4857 18 14 1.4029 -9.9988 2.6045 19 1 2.7356 -10.3415 3.1629 20 1 0.4466 -11.0967 2.8964 21 1 1.5140 -9.8168 1.1348 22 6 -1.0133 -6.1959 3.6132 23 6 -1.9092 -5.2968 2.7572 24 6 -1.9389 -5.8240 1.3203 25 6 -2.9002 -4.9683 0.4908 26 8 -4.1971 -4.9944 1.0903 27 6 -4.2377 -4.4666 2.4177 28 6 -3.3307 -5.3024 3.3251 29 6 -1.3593 -3.8696 2.7679 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1264 1.4439 -0.0887 35 1 1.6059 1.9814 -0.8423 36 1 1.7509 1.9301 0.9310 37 1 0.2226 -1.8341 2.7867 38 1 1.9469 -4.8140 2.5512 39 1 1.0749 -4.3015 4.0174 40 1 -0.1382 -9.3137 4.8939 41 1 -1.0685 -5.8808 4.6552 42 1 -1.3432 -7.2310 3.5244 43 1 -0.9386 -5.7681 0.8911 44 1 -2.2795 -6.8594 1.3192 45 1 -2.9598 -5.3667 -0.5220 46 1 -2.5360 -3.9415 0.4569 47 1 -5.2606 -4.5037 2.7926 48 1 -3.8906 -3.4334 2.4090 49 1 -3.7019 -6.3263 3.3677 50 1 -3.3242 -4.8742 4.3275 51 1 -2.0093 -3.2257 2.1754 52 1 -1.3219 -3.5026 3.7936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099588772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:25 Heat of formation + Delta-G solvation = -145.823240 kcal Electronic energy + Delta-G solvation = -32964.719488 eV Core-core repulsion = 28684.662076 eV Total energy + Delta-G solvation = -4280.057412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.92605 -41.66567 -40.51417 -38.41787 -36.57041 -36.03409 -35.13068 -33.19607 -32.01272 -31.13472 -28.73957 -28.36970 -27.91113 -27.32989 -24.56723 -24.55248 -23.68515 -22.41768 -21.58452 -21.29024 -19.62724 -18.82628 -18.46930 -17.86579 -17.29332 -16.95323 -16.86943 -16.53230 -16.40856 -16.07772 -15.69222 -15.62613 -15.39903 -15.22461 -15.11537 -15.01438 -14.58520 -14.27710 -14.04937 -13.85952 -13.64948 -13.33098 -13.21353 -13.11011 -13.02111 -12.99715 -12.76464 -12.69558 -12.37739 -12.17690 -12.14069 -12.12110 -12.01729 -11.93580 -11.86052 -11.64323 -11.60212 -11.15300 -11.01964 -10.73287 -10.62306 -10.26159 -10.19473 -8.70816 -7.92794 -5.35827 1.36630 1.40046 1.41942 1.51488 1.89879 2.46657 3.04125 3.21078 3.32218 3.42988 3.60193 3.70045 3.73174 3.79803 3.91349 3.95198 4.14057 4.18702 4.19773 4.24283 4.33822 4.38745 4.43510 4.49861 4.53846 4.55930 4.75384 4.76319 4.80814 4.85994 4.89824 4.90964 4.95690 4.97019 5.00384 5.08601 5.13256 5.15944 5.27274 5.29654 5.33453 5.37539 5.41863 5.48416 5.55691 5.64061 5.75259 6.33363 6.34520 6.44049 7.10185 7.13589 7.80718 8.29025 9.12148 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.010240 B = 0.004153 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.708107 B = 6740.655327 C = 8615.867518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.142 4.142 4 C 0.086 3.914 5 H 0.144 0.856 6 F -0.206 7.206 7 C 0.488 3.512 8 O -0.574 6.574 9 N -0.697 5.697 10 C 0.141 3.859 11 H 0.067 0.933 12 C 0.142 3.858 13 N -0.599 5.599 14 C -0.262 4.262 15 H 0.050 0.950 16 C -0.038 4.038 17 N -0.926 5.926 18 Si 0.955 3.045 19 H -0.285 1.285 20 H -0.286 1.286 21 H -0.278 1.278 22 C 0.191 3.809 23 C -0.071 4.071 24 C -0.130 4.130 25 C 0.070 3.930 26 O -0.400 6.400 27 C 0.063 3.937 28 C -0.136 4.136 29 C -0.098 4.098 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.419 0.581 38 H 0.025 0.975 39 H 0.022 0.978 40 H 0.251 0.749 41 H 0.002 0.998 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.093 0.907 46 H 0.063 0.937 47 H 0.110 0.890 48 H 0.072 0.928 49 H 0.051 0.949 50 H 0.086 0.914 51 H 0.090 0.910 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.624 22.105 -4.192 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.047 3.953 5 H 0.161 0.839 6 F -0.187 7.187 7 C 0.273 3.727 8 O -0.453 6.453 9 N -0.349 5.349 10 C 0.034 3.966 11 H 0.085 0.915 12 C 0.015 3.985 13 N -0.322 5.322 14 C -0.392 4.392 15 H 0.068 0.932 16 C -0.234 4.234 17 N -0.571 5.571 18 Si 0.784 3.216 19 H -0.211 1.211 20 H -0.212 1.212 21 H -0.203 1.203 22 C 0.066 3.934 23 C -0.074 4.074 24 C -0.168 4.168 25 C -0.007 4.007 26 O -0.319 6.319 27 C -0.013 4.013 28 C -0.174 4.174 29 C -0.136 4.136 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.257 0.743 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.111 0.889 46 H 0.081 0.919 47 H 0.128 0.872 48 H 0.090 0.910 49 H 0.070 0.930 50 H 0.105 0.895 51 H 0.109 0.891 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.478 21.303 -4.743 23.071 hybrid contribution 1.250 -1.559 0.271 2.016 sum -6.228 19.745 -4.473 21.181 Atomic orbital electron populations 1.21847 0.91890 1.02043 1.04699 1.21628 0.98514 0.97937 0.95132 1.21812 1.01144 0.92895 1.04094 1.21963 0.76106 0.92586 1.04627 0.83856 1.92841 1.30561 1.97202 1.98109 1.21580 0.79693 0.90982 0.80429 1.90756 1.58914 1.54205 1.41395 1.45911 1.40245 1.12627 1.36113 1.21337 0.94324 0.80946 0.99958 0.91536 1.21229 0.94792 0.86243 0.96253 1.44101 1.10308 1.00567 1.77210 1.19300 1.14744 0.87729 1.17445 0.93205 1.25549 1.00985 1.00793 0.96113 1.70139 1.43636 1.24762 1.18592 0.85463 0.77544 0.80187 0.78435 1.21149 1.21197 1.20293 1.20690 0.82165 0.98167 0.92367 1.20992 0.95461 0.95473 0.95430 1.22014 0.99568 0.99057 0.96132 1.22573 0.82680 0.99150 0.96271 1.87867 1.29507 1.84669 1.29888 1.22761 1.00805 0.96489 0.81278 1.22111 0.93780 1.01166 1.00389 1.21748 0.93398 0.96408 1.02046 0.89260 0.90373 0.93923 0.91846 0.93045 0.90410 0.90181 0.74294 0.95661 0.96002 0.93953 0.98034 0.92670 0.92515 0.94192 0.88926 0.91859 0.87238 0.91037 0.92974 0.89509 0.89130 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.93 71.98 0.64 -1.15 16 2 C -0.11 -1.85 2.77 -10.79 -0.03 -1.88 16 3 C -0.14 -1.63 9.03 71.98 0.65 -0.98 16 4 C 0.09 1.72 3.34 29.85 0.10 1.82 16 5 H 0.14 1.54 7.96 -2.39 -0.02 1.52 16 6 F -0.21 -5.57 16.66 44.97 0.75 -4.83 16 7 C 0.49 13.84 5.58 87.66 0.49 14.33 16 8 O -0.57 -23.23 16.72 -3.02 -0.05 -23.28 16 9 N -0.70 -16.67 5.08 -442.14 -2.25 -18.91 16 10 C 0.14 4.55 2.27 45.07 0.10 4.65 16 11 H 0.07 2.57 5.72 -2.39 -0.01 2.56 16 12 C 0.14 6.10 6.09 86.36 0.53 6.62 16 13 N -0.60 -30.12 2.52 -699.25 -1.76 -31.88 16 14 C -0.26 -15.01 9.60 84.03 0.81 -14.20 16 15 H 0.05 2.95 7.88 -2.91 -0.02 2.93 16 16 C -0.04 -2.19 4.92 84.86 0.42 -1.77 16 17 N -0.93 -54.47 11.11 21.65 0.24 -54.23 16 18 Si 0.96 46.54 29.59 68.60 2.03 48.57 16 19 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 22 C 0.19 8.78 4.00 86.33 0.34 9.12 16 23 C -0.07 -2.39 0.51 -52.11 -0.03 -2.42 16 24 C -0.13 -4.63 4.48 30.66 0.14 -4.50 16 25 C 0.07 1.94 6.57 72.02 0.47 2.41 16 26 O -0.40 -11.11 10.76 -148.98 -1.60 -12.71 16 27 C 0.06 1.38 6.57 72.02 0.47 1.85 16 28 C -0.14 -3.77 4.92 30.66 0.15 -3.62 16 29 C -0.10 -2.60 3.63 30.59 0.11 -2.49 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.04 0.70 7.18 -2.39 -0.02 0.68 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 0.72 7.97 -2.39 -0.02 0.70 16 35 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.42 6.14 8.47 -92.71 -0.79 5.35 16 38 H 0.02 1.22 7.93 -2.39 -0.02 1.20 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.05 2.97 5.95 -2.39 -0.01 2.96 16 43 H 0.06 2.33 5.93 -2.39 -0.01 2.31 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.06 1.53 6.64 -2.39 -0.02 1.51 16 47 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 48 H 0.07 1.24 6.59 -2.39 -0.02 1.23 16 49 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 51 H 0.09 1.86 5.03 -2.39 -0.01 1.84 16 52 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -76.05 394.37 2.86 -73.20 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.13 Total: 16.27 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 5.37 Total: 7.81 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -3.77 Total: -105.02 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -1.65 Total: -35.99 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.75 Total: -4.83 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -76.05 2.86 -73.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099588772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.625 kcal (2) G-P(sol) polarization free energy of solvation -76.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds