Wall clock time and date at job start Wed Apr 1 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47601 * 2 1 4 4 C 1.53002 * 109.47344 * 119.99766 * 2 1 3 5 5 H 1.08998 * 109.47712 * 184.99783 * 4 2 1 6 6 F 1.39903 * 109.47344 * 305.00248 * 4 2 1 7 7 C 1.50705 * 109.46875 * 64.99687 * 4 2 1 8 8 O 1.21279 * 120.00070 * 315.00571 * 7 4 2 9 9 N 1.34783 * 119.99563 * 135.00049 * 7 4 2 10 10 C 1.46502 * 119.99707 * 180.02562 * 9 7 4 11 11 H 1.09008 * 109.49641 * 34.99750 * 10 9 7 12 12 C 1.53186 * 109.49696 * 274.93943 * 10 9 7 13 13 N 1.46926 * 108.80214 * 185.38004 * 12 10 9 14 14 C 1.36938 * 120.64468 * 233.67124 * 13 12 10 15 15 H 1.08000 * 119.99845 * 152.80037 * 14 13 12 16 16 C 1.38813 * 120.00251 * 332.80416 * 14 13 12 17 17 N 1.31614 * 120.00258 * 159.72931 * 16 14 13 18 18 Si 1.86803 * 119.99461 * 339.72744 * 16 14 13 19 19 H 1.48501 * 109.46744 * 94.92082 * 18 16 14 20 20 H 1.48500 * 109.46774 * 214.91390 * 18 16 14 21 21 H 1.48495 * 109.47332 * 334.91593 * 18 16 14 22 22 C 1.46947 * 118.71159 * 53.65306 * 13 12 10 23 23 C 1.53101 * 108.77463 * 306.49106 * 22 13 12 24 24 C 1.53087 * 109.46571 * 294.35049 * 23 22 13 25 25 C 1.53111 * 109.15493 * 297.03256 * 24 23 22 26 26 O 1.42898 * 109.40480 * 302.51555 * 25 24 23 27 27 C 1.42909 * 114.14213 * 61.17054 * 26 25 24 28 28 C 1.53076 * 109.47175 * 174.68172 * 23 22 13 29 29 C 1.52925 * 109.51879 * 54.47728 * 23 22 13 30 30 H 1.09007 * 109.46641 * 300.00174 * 1 2 3 31 31 H 1.08995 * 109.47190 * 59.99942 * 1 2 3 32 32 H 1.08992 * 109.47252 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47333 * 239.99782 * 2 1 3 34 34 H 1.09001 * 109.47256 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46803 * 300.00192 * 3 2 1 36 36 H 1.09002 * 109.46954 * 59.99550 * 3 2 1 37 37 H 0.96999 * 120.00487 * 0.02562 * 9 7 4 38 38 H 1.09002 * 109.58316 * 305.17634 * 12 10 9 39 39 H 1.09000 * 109.58828 * 65.58459 * 12 10 9 40 40 H 0.96995 * 119.99829 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.58861 * 66.28106 * 22 13 12 42 42 H 1.09000 * 109.58316 * 186.70441 * 22 13 12 43 43 H 1.08995 * 109.52877 * 56.93818 * 24 23 22 44 44 H 1.09005 * 109.51865 * 177.13358 * 24 23 22 45 45 H 1.09003 * 109.48222 * 182.53255 * 25 24 23 46 46 H 1.09004 * 109.48294 * 62.49038 * 25 24 23 47 47 H 1.08999 * 109.48573 * 178.84936 * 27 26 25 48 48 H 1.09000 * 109.48113 * 58.80397 * 27 26 25 49 49 H 1.08997 * 109.52022 * 182.86039 * 28 23 22 50 50 H 1.08998 * 109.52397 * 302.98256 * 28 23 22 51 51 H 1.09005 * 109.48368 * 178.81245 * 29 23 22 52 52 H 1.09002 * 109.43011 * 58.86631 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6444 1.2952 6 9 1.4822 -0.1314 2.3887 7 6 1.6413 -2.1733 1.1890 8 8 0.5142 -2.4796 0.8622 9 7 2.5373 -3.1315 1.4981 10 6 2.1498 -4.5431 1.4390 11 1 1.4489 -4.6939 0.6178 12 6 1.4854 -4.9467 2.7589 13 7 1.2205 -6.3916 2.7333 14 6 -0.0365 -6.8753 2.9805 15 1 -0.3454 -7.8188 2.5553 16 6 -0.9139 -6.1529 3.7777 17 7 -2.2083 -6.3794 3.7043 18 14 -0.2571 -4.8594 4.9545 19 1 -0.3076 -3.5260 4.3026 20 1 -1.0893 -4.8409 6.1842 21 1 1.1474 -5.1828 5.3120 22 6 2.3306 -7.3077 2.4370 23 6 2.9876 -6.8769 1.1229 24 6 1.9965 -7.0648 -0.0286 25 6 1.6549 -8.5515 -0.1598 26 8 2.8555 -9.2979 -0.3686 27 6 3.7990 -9.1982 0.7002 28 6 4.2271 -7.7375 0.8659 29 6 3.3941 -5.4054 1.2133 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.4386 -2.8865 1.7597 38 1 2.1509 -4.7119 3.5897 39 1 0.5467 -4.4052 2.8760 40 1 -2.8212 -5.8749 4.2616 41 1 3.0635 -7.2665 3.2427 42 1 1.9493 -8.3241 2.3388 43 1 1.0878 -6.4990 0.1767 44 1 2.4453 -6.7108 -0.9568 45 1 0.9844 -8.6971 -1.0068 46 1 1.1677 -8.8946 0.7529 47 1 4.6723 -9.8094 0.4724 48 1 3.3400 -9.5496 1.6242 49 1 4.7241 -7.3982 -0.0428 50 1 4.9119 -7.6511 1.7095 51 1 3.8807 -5.1050 0.2854 52 1 4.0851 -5.2706 2.0455 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099588773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:28 Heat of formation + Delta-G solvation = -138.157387 kcal Electronic energy + Delta-G solvation = -33062.413848 eV Core-core repulsion = 28782.688852 eV Total energy + Delta-G solvation = -4279.724996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.00391 -41.70059 -40.61973 -38.58631 -36.40334 -35.92227 -35.40427 -33.39840 -32.00611 -31.70156 -28.84857 -28.44583 -28.06665 -27.38669 -24.88177 -24.46496 -23.62082 -22.55214 -21.84735 -21.15590 -19.47517 -18.95076 -18.60904 -18.09614 -17.52807 -17.01148 -16.94063 -16.82064 -16.41754 -16.08946 -15.87399 -15.85244 -15.44891 -15.29499 -15.09814 -14.75501 -14.67784 -14.45828 -14.20409 -14.05173 -13.82938 -13.65127 -13.33274 -13.18764 -13.10750 -12.99778 -12.94961 -12.58530 -12.50154 -12.31266 -12.19138 -12.13436 -11.92777 -11.90612 -11.78752 -11.68243 -11.66349 -11.10661 -11.02939 -10.77786 -10.64194 -10.28475 -10.18650 -8.95342 -8.22934 -5.52879 1.23308 1.26389 1.30246 1.36058 1.87473 2.34478 2.98741 3.03096 3.26184 3.33887 3.50714 3.62429 3.63890 3.75978 3.81418 3.86044 4.05794 4.16945 4.19901 4.22619 4.32854 4.35288 4.35817 4.42033 4.52792 4.53851 4.67142 4.73497 4.75386 4.79227 4.81491 4.90713 4.93061 4.95883 4.97647 5.02416 5.05349 5.09400 5.10954 5.20409 5.28071 5.28389 5.35900 5.41101 5.46789 5.55647 5.81430 6.07602 6.33519 6.39148 6.85267 7.11954 7.57134 7.95911 8.96604 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.010232 B = 0.004515 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.765211 B = 6199.565770 C = 7891.407546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.086 3.914 5 H 0.150 0.850 6 F -0.206 7.206 7 C 0.476 3.524 8 O -0.557 6.557 9 N -0.701 5.701 10 C 0.134 3.866 11 H 0.066 0.934 12 C 0.118 3.882 13 N -0.608 5.608 14 C -0.237 4.237 15 H 0.059 0.941 16 C -0.030 4.030 17 N -0.953 5.953 18 Si 0.938 3.062 19 H -0.304 1.304 20 H -0.311 1.311 21 H -0.249 1.249 22 C 0.149 3.851 23 C -0.069 4.069 24 C -0.131 4.131 25 C 0.066 3.934 26 O -0.397 6.397 27 C 0.050 3.950 28 C -0.128 4.128 29 C -0.095 4.095 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.420 0.580 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.258 0.742 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.035 0.965 47 H 0.116 0.884 48 H 0.044 0.956 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.094 0.906 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.311 8.839 -8.946 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.125 4.125 3 C -0.199 4.199 4 C 0.047 3.953 5 H 0.168 0.832 6 F -0.187 7.187 7 C 0.261 3.739 8 O -0.434 6.434 9 N -0.355 5.355 10 C 0.027 3.973 11 H 0.084 0.916 12 C -0.008 4.008 13 N -0.331 5.331 14 C -0.366 4.366 15 H 0.076 0.924 16 C -0.225 4.225 17 N -0.599 5.599 18 Si 0.769 3.231 19 H -0.232 1.232 20 H -0.240 1.240 21 H -0.172 1.172 22 C 0.025 3.975 23 C -0.071 4.071 24 C -0.169 4.169 25 C -0.011 4.011 26 O -0.316 6.316 27 C -0.026 4.026 28 C -0.166 4.166 29 C -0.132 4.132 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.053 0.947 47 H 0.134 0.866 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.114 0.886 51 H 0.112 0.888 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.403 8.524 -9.232 23.961 hybrid contribution -1.027 0.796 1.476 1.966 sum 19.376 9.320 -7.756 22.857 Atomic orbital electron populations 1.22082 0.95608 1.03254 1.01585 1.21595 0.96697 0.98472 0.95778 1.21827 1.02321 0.92906 1.02837 1.21965 1.01604 0.87085 0.84615 0.83223 1.92841 1.88231 1.84515 1.53082 1.21782 0.85415 0.89605 0.77116 1.90708 1.21707 1.83682 1.47289 1.46019 1.15702 1.05716 1.68019 1.21457 0.98196 0.79806 0.97803 0.91625 1.21640 0.97774 0.85123 0.96263 1.44287 1.06182 1.00441 1.82240 1.18801 0.88646 1.05987 1.23207 0.92354 1.25797 0.95333 1.00801 1.00596 1.69941 1.02362 1.45165 1.42430 0.86032 0.78960 0.79013 0.79054 1.23238 1.24018 1.17246 1.21341 0.88675 0.93020 0.94447 1.20933 0.95713 0.95402 0.95035 1.22040 0.99671 0.96712 0.98477 1.22467 0.86685 0.91007 1.00914 1.87850 1.28774 1.70473 1.44525 1.22820 0.92729 0.97033 0.89998 1.22115 0.96077 0.94452 1.03973 1.21686 0.94925 0.92603 1.04033 0.93962 0.91146 0.92217 0.87972 0.89891 0.90763 0.92955 0.74147 0.94704 0.94990 0.93277 0.93917 0.92603 0.93175 0.90653 0.89203 0.94691 0.86600 0.93766 0.89537 0.88557 0.88782 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.55 8.71 71.98 0.63 -3.93 16 2 C -0.11 -2.11 2.75 -10.79 -0.03 -2.14 16 3 C -0.14 -1.95 9.11 71.98 0.66 -1.30 16 4 C 0.09 1.90 3.46 29.85 0.10 2.00 16 5 H 0.15 1.67 7.99 -2.39 -0.02 1.65 16 6 F -0.21 -5.93 16.03 44.97 0.72 -5.21 16 7 C 0.48 14.72 7.14 87.66 0.63 15.34 16 8 O -0.56 -23.72 13.46 -3.03 -0.04 -23.76 16 9 N -0.70 -18.07 5.08 -442.13 -2.25 -20.31 16 10 C 0.13 4.36 2.26 45.07 0.10 4.46 16 11 H 0.07 2.61 5.87 -2.38 -0.01 2.60 16 12 C 0.12 5.09 3.76 86.36 0.33 5.42 16 13 N -0.61 -27.79 2.18 -699.22 -1.52 -29.32 16 14 C -0.24 -13.50 10.04 84.03 0.84 -12.66 16 15 H 0.06 3.60 8.05 -2.91 -0.02 3.57 16 16 C -0.03 -1.85 5.24 84.86 0.44 -1.40 16 17 N -0.95 -62.73 13.97 21.65 0.30 -62.42 16 18 Si 0.94 50.16 24.35 68.60 1.67 51.84 16 19 H -0.30 -16.90 6.70 99.48 0.67 -16.23 16 20 H -0.31 -16.81 7.11 99.48 0.71 -16.10 16 21 H -0.25 -12.12 6.46 99.48 0.64 -11.48 16 22 C 0.15 5.22 4.60 86.33 0.40 5.62 16 23 C -0.07 -1.82 0.52 -52.12 -0.03 -1.85 16 24 C -0.13 -4.05 4.37 30.66 0.13 -3.92 16 25 C 0.07 2.07 6.57 72.02 0.47 2.55 16 26 O -0.40 -11.24 10.76 -148.98 -1.60 -12.84 16 27 C 0.05 1.10 6.57 72.02 0.47 1.57 16 28 C -0.13 -2.44 4.92 30.66 0.15 -2.29 16 29 C -0.09 -2.16 4.19 30.59 0.13 -2.04 16 30 H 0.04 1.22 7.69 -2.38 -0.02 1.20 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 2.10 5.25 -2.39 -0.01 2.09 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.05 0.84 7.94 -2.39 -0.02 0.82 16 37 H 0.42 6.56 8.50 -92.71 -0.79 5.77 16 38 H 0.04 1.43 6.99 -2.39 -0.02 1.41 16 39 H 0.03 1.70 4.49 -2.39 -0.01 1.68 16 40 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 2.08 4.84 -2.39 -0.01 2.07 16 43 H 0.05 1.98 6.10 -2.39 -0.01 1.96 16 44 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 46 H 0.03 1.27 6.48 -2.38 -0.02 1.26 16 47 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.04 1.05 6.73 -2.39 -0.02 1.03 16 49 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.09 1.64 8.14 -2.38 -0.02 1.63 16 52 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -81.52 383.23 2.74 -78.78 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.03 Total: 17.82 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 5.43 Total: 5.43 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -3.47 Total: -112.05 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.64 Total: -36.61 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.72 Total: -5.21 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 1.67 Total: 51.84 kcal Total: -81.52 2.74 -78.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099588773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.379 kcal (2) G-P(sol) polarization free energy of solvation -81.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds