Wall clock time and date at job start Wed Apr 1 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 120.00127 * 2 1 4 4 C 1.53007 * 109.46910 * 122.69531 * 3 2 1 5 5 H 1.08998 * 109.47374 * 305.17189 * 4 3 2 6 6 C 1.53004 * 109.46997 * 185.17363 * 4 3 2 7 7 C 1.50698 * 109.47204 * 65.00022 * 6 4 3 8 8 C 1.38238 * 119.99742 * 269.72970 * 7 6 4 9 9 C 1.38239 * 119.99377 * 179.76505 * 8 7 6 10 10 C 1.38235 * 120.00250 * 0.50509 * 9 8 7 11 11 C 1.38230 * 120.00076 * 359.74745 * 10 9 8 12 12 C 1.38235 * 120.00022 * 89.99984 * 7 6 4 13 13 C 1.50695 * 109.46958 * 65.17306 * 4 3 2 14 14 O 1.21283 * 120.00015 * 34.99006 * 13 4 3 15 15 N 1.34775 * 120.00063 * 214.71559 * 13 4 3 16 16 C 1.46502 * 120.00342 * 175.41312 * 15 13 4 17 17 C 1.53002 * 109.47288 * 179.97438 * 16 15 13 18 18 C 1.53778 * 113.61317 * 274.13450 * 17 16 15 19 19 C 1.53949 * 87.01880 * 220.04791 * 18 17 16 20 20 N 1.46504 * 113.53937 * 270.80969 * 19 18 17 21 21 C 1.36929 * 120.00241 * 252.49449 * 20 19 18 22 22 H 1.07996 * 119.99973 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99999 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99842 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99845 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46879 * 90.00128 * 25 23 21 27 27 H 1.48497 * 109.47040 * 209.99927 * 25 23 21 28 28 H 1.48497 * 109.47520 * 330.00130 * 25 23 21 29 29 C 1.53780 * 113.61386 * 176.52634 * 17 16 15 30 30 H 1.08003 * 119.99520 * 359.97438 * 1 2 3 31 31 H 1.07996 * 119.99470 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00019 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46891 * 2.69938 * 3 2 1 34 34 H 1.08994 * 109.47140 * 242.69821 * 3 2 1 35 35 H 1.08990 * 109.47139 * 185.00443 * 6 4 3 36 36 H 1.09006 * 109.46643 * 305.00025 * 6 4 3 37 37 H 1.07996 * 120.00427 * 359.97438 * 8 7 6 38 38 H 1.08002 * 119.99364 * 180.22606 * 9 8 7 39 39 H 1.08002 * 119.99860 * 179.72376 * 10 9 8 40 40 H 1.07993 * 120.00473 * 179.97438 * 11 10 9 41 41 H 1.07999 * 119.99902 * 0.02562 * 12 7 6 42 42 H 0.97001 * 119.99794 * 355.40467 * 15 13 4 43 43 H 1.09000 * 109.46700 * 299.99909 * 16 15 13 44 44 H 1.08996 * 109.47124 * 59.99511 * 16 15 13 45 45 H 1.09001 * 112.84710 * 45.32562 * 17 16 15 46 46 H 1.08998 * 113.61193 * 334.56710 * 18 17 16 47 47 H 1.08996 * 113.61381 * 105.47209 * 18 17 16 48 48 H 1.09000 * 113.74432 * 139.94479 * 19 18 17 49 49 H 0.97007 * 119.99233 * 72.49443 * 20 19 18 50 50 H 0.97001 * 119.99643 * 180.02562 * 24 23 21 51 51 H 1.08999 * 113.61213 * 254.53132 * 29 17 16 52 52 H 1.08996 * 113.61268 * 25.43185 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9934 1.3571 1.2140 5 1 2.4153 1.1863 2.1221 6 6 3.6618 2.7316 1.2859 7 6 2.6157 3.7863 1.5395 8 6 1.9898 4.4087 0.4757 9 6 1.0267 5.3727 0.7084 10 6 0.6970 5.7217 2.0048 11 6 1.3267 5.1029 3.0685 12 6 2.2861 4.1352 2.8359 13 6 4.0502 0.2908 1.0833 14 8 4.4909 0.0046 -0.0097 15 7 4.5096 -0.3409 2.1817 16 6 5.4621 -1.4457 2.0468 17 6 5.8204 -1.9825 3.4340 18 6 6.9704 -1.2191 4.1118 19 6 7.4795 -2.5855 4.6055 20 7 6.9182 -2.9868 5.8979 21 6 7.7015 -2.9658 7.0208 22 1 8.7330 -2.6529 6.9539 23 6 7.1695 -3.3455 8.2454 24 7 5.9123 -3.7263 8.3271 25 14 8.2379 -3.3161 9.7774 26 1 8.1358 -1.9844 10.4266 27 1 7.7767 -4.3643 10.7228 28 1 9.6506 -3.5761 9.4008 29 6 6.7533 -3.2046 3.3996 30 1 -0.5399 0.9354 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3562 2.1330 0.0484 34 1 2.6534 1.3841 -0.9131 35 1 4.3898 2.7395 2.0970 36 1 4.1666 2.9399 0.3425 37 1 2.2507 4.1395 -0.5371 38 1 0.5350 5.8564 -0.1227 39 1 -0.0522 6.4780 2.1865 40 1 1.0695 5.3758 4.0812 41 1 2.7785 3.6523 3.6669 42 1 4.2096 -0.0639 3.0615 43 1 5.0130 -2.2422 1.4534 44 1 6.3650 -1.0886 1.5514 45 1 4.9484 -2.1167 4.0741 46 1 7.6444 -0.7303 3.4082 47 1 6.6427 -0.5583 4.9142 48 1 8.5636 -2.6912 4.5638 49 1 5.9916 -3.2675 5.9580 50 1 5.5404 -3.9914 9.1829 51 1 6.2505 -4.1443 3.6279 52 1 7.3678 -3.2596 2.5010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101012636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:15 Heat of formation + Delta-G solvation = 20.156551 kcal Electronic energy + Delta-G solvation = -28893.657279 eV Core-core repulsion = 25051.566515 eV Total energy + Delta-G solvation = -3842.090764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.40882 -39.39799 -38.55450 -36.03168 -34.63133 -33.65641 -33.17800 -31.19250 -30.63456 -30.04646 -27.45957 -26.68354 -25.08303 -24.13200 -23.35525 -22.81343 -21.72760 -21.27147 -20.39492 -19.69146 -18.38141 -17.49344 -17.25996 -16.90048 -16.18477 -15.58880 -15.52770 -15.29266 -15.13941 -14.85808 -14.37326 -14.26999 -13.88593 -13.69715 -13.63836 -13.33041 -13.12888 -13.04013 -13.00617 -12.88913 -12.51762 -12.23810 -11.94108 -11.60915 -11.59871 -11.39937 -11.37733 -11.20621 -11.06356 -10.98993 -10.86009 -10.50543 -10.20675 -10.08764 -9.74416 -9.71456 -9.53819 -9.44117 -9.18942 -9.01786 -8.95425 -8.89228 -7.02736 -5.83374 -3.12360 1.03920 1.11179 2.10269 2.60405 3.17964 3.39860 3.45431 3.46967 3.51177 4.33210 4.44857 4.53463 4.59878 4.69691 4.75499 4.76894 4.86127 4.98515 5.03763 5.07883 5.14243 5.15867 5.17686 5.22240 5.26282 5.42992 5.45708 5.46960 5.61385 5.63965 5.69703 5.74198 5.76133 5.81268 5.85311 5.87441 5.94395 6.09677 6.17600 6.19499 6.23488 6.33281 6.35206 6.41959 6.47695 6.57294 6.59740 6.71396 6.72085 6.88251 7.02127 7.51895 7.66624 8.21314 8.35836 9.46549 10.04042 10.38272 11.39066 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.002153 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.095872 B =13003.216537 C =14348.742342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.081 4.081 4 C -0.095 4.095 5 H 0.092 0.908 6 C -0.071 4.071 7 C -0.078 4.078 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.125 4.125 11 C -0.118 4.118 12 C -0.115 4.115 13 C 0.517 3.483 14 O -0.544 6.544 15 N -0.723 5.723 16 C 0.130 3.870 17 C -0.119 4.119 18 C -0.168 4.168 19 C 0.167 3.833 20 N -0.706 5.706 21 C -0.242 4.242 22 H 0.072 0.928 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C -0.148 4.148 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.402 0.598 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.385 0.615 50 H 0.256 0.744 51 H 0.068 0.932 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.379 16.411 -17.073 26.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.168 4.168 3 C -0.119 4.119 4 C -0.117 4.117 5 H 0.110 0.890 6 C -0.109 4.109 7 C -0.078 4.078 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.143 4.143 11 C -0.136 4.136 12 C -0.133 4.133 13 C 0.303 3.697 14 O -0.421 6.421 15 N -0.374 5.374 16 C 0.007 3.993 17 C -0.138 4.138 18 C -0.209 4.209 19 C 0.055 3.945 20 N -0.344 5.344 21 C -0.373 4.373 22 H 0.090 0.910 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.188 4.188 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.236 0.764 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.219 0.781 50 H 0.066 0.934 51 H 0.087 0.913 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.915 16.151 -17.690 26.324 hybrid contribution -0.078 0.023 1.412 1.415 sum -10.993 16.175 -16.277 25.445 Atomic orbital electron populations 1.23826 0.95834 1.01712 1.01837 1.22973 0.95964 0.98620 0.99203 1.20770 0.97647 0.95849 0.97591 1.21272 0.95653 0.93516 1.01216 0.89003 1.20537 0.95950 0.90553 1.03843 1.19779 0.97550 0.97084 0.93369 1.21099 0.96794 0.96651 0.98757 1.21147 0.97925 0.97821 0.96947 1.21161 1.00113 1.00151 0.92872 1.21174 0.96599 0.96654 0.99142 1.21129 0.97958 0.97772 0.96395 1.20512 0.82547 0.82307 0.84345 1.90681 1.59050 1.65758 1.26596 1.46145 1.46403 1.35679 1.09172 1.21471 0.92094 0.87998 0.97724 1.22702 0.98305 0.98410 0.94379 1.23904 0.97269 1.00089 0.99637 1.21091 0.96071 0.91701 0.85641 1.42171 1.12392 1.78005 1.01847 1.19289 0.94195 1.37587 0.86250 0.90995 1.24765 0.96339 1.01959 0.97837 1.69659 1.12663 1.51030 1.24720 0.86170 0.79497 0.77243 0.83159 1.21681 1.21747 1.20689 1.23438 0.98450 0.97016 0.99870 0.88684 0.88580 0.87533 0.90230 0.89691 0.90130 0.89924 0.85955 0.86166 0.86262 0.86022 0.85810 0.76358 0.92008 0.91594 0.88950 0.91444 0.91535 0.91976 0.78124 0.93434 0.91344 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 14.32 29.01 0.42 -1.33 16 2 C -0.15 -1.52 9.07 -36.02 -0.33 -1.84 16 3 C -0.08 -0.76 4.63 -27.88 -0.13 -0.89 16 4 C -0.10 -0.89 2.16 -91.77 -0.20 -1.09 16 5 H 0.09 0.79 8.13 -51.93 -0.42 0.37 16 6 C -0.07 -0.60 4.82 -27.88 -0.13 -0.74 16 7 C -0.08 -0.65 4.71 -104.62 -0.49 -1.14 16 8 C -0.12 -0.90 7.88 -39.58 -0.31 -1.21 16 9 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 10 C -0.12 -0.92 10.05 -39.59 -0.40 -1.31 16 11 C -0.12 -0.92 10.05 -39.58 -0.40 -1.31 16 12 C -0.11 -0.95 9.70 -39.58 -0.38 -1.33 16 13 C 0.52 6.31 6.10 -10.99 -0.07 6.24 16 14 O -0.54 -8.50 16.17 5.55 0.09 -8.41 16 15 N -0.72 -8.46 5.55 -60.29 -0.33 -8.80 16 16 C 0.13 1.71 5.50 -4.04 -0.02 1.68 16 17 C -0.12 -1.73 3.62 -89.81 -0.33 -2.06 16 18 C -0.17 -2.72 7.44 -25.83 -0.19 -2.91 16 19 C 0.17 3.21 4.57 -67.03 -0.31 2.90 16 20 N -0.71 -17.13 5.31 -52.55 -0.28 -17.40 16 21 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 25 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 29 C -0.15 -2.33 7.39 -25.92 -0.19 -2.53 16 30 H 0.09 0.76 7.84 -52.48 -0.41 0.34 16 31 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.11 1.23 7.81 -52.49 -0.41 0.82 16 33 H 0.08 0.66 5.57 -51.93 -0.29 0.37 16 34 H 0.08 0.88 7.67 -51.93 -0.40 0.48 16 35 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.12 0.82 8.01 -52.49 -0.42 0.40 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.40 4.10 8.47 -40.82 -0.35 3.76 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.90 7.87 -51.93 -0.41 0.50 16 45 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 46 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 49 H 0.38 9.88 7.90 -40.82 -0.32 9.55 16 50 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 52 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 427.06 15.07 6.44 6.44 Total: -1.00 -31.36 427.06 -11.37 -42.73 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -8.87 Total: 12.65 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -4.11 Total: -17.33 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.11 Total: -53.04 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -31.36 -11.37 -42.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101012636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.884 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds