Wall clock time and date at job start Wed Apr 1 2020 02:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 120.00127 * 2 1 4 4 C 1.53007 * 109.46910 * 122.69531 * 3 2 1 5 5 H 1.08998 * 109.47374 * 305.17189 * 4 3 2 6 6 C 1.53004 * 109.46997 * 185.17363 * 4 3 2 7 7 C 1.50698 * 109.47204 * 65.00022 * 6 4 3 8 8 C 1.38238 * 119.99742 * 269.72970 * 7 6 4 9 9 C 1.38239 * 119.99377 * 179.76505 * 8 7 6 10 10 C 1.38235 * 120.00250 * 0.50509 * 9 8 7 11 11 C 1.38230 * 120.00076 * 359.74745 * 10 9 8 12 12 C 1.38235 * 120.00022 * 89.99984 * 7 6 4 13 13 C 1.50695 * 109.46958 * 65.17306 * 4 3 2 14 14 O 1.21283 * 120.00015 * 34.99006 * 13 4 3 15 15 N 1.34775 * 120.00063 * 214.71559 * 13 4 3 16 16 C 1.46502 * 120.00342 * 175.41312 * 15 13 4 17 17 C 1.53002 * 109.47288 * 179.97438 * 16 15 13 18 18 C 1.53778 * 113.61317 * 274.13450 * 17 16 15 19 19 C 1.53949 * 87.01880 * 220.04791 * 18 17 16 20 20 N 1.46504 * 113.53937 * 270.80969 * 19 18 17 21 21 C 1.36929 * 120.00241 * 252.49449 * 20 19 18 22 22 H 1.07996 * 119.99973 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99999 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99842 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99845 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46879 * 90.00128 * 25 23 21 27 27 H 1.48497 * 109.47040 * 209.99927 * 25 23 21 28 28 H 1.48497 * 109.47520 * 330.00130 * 25 23 21 29 29 C 1.53780 * 113.61386 * 176.52634 * 17 16 15 30 30 H 1.08003 * 119.99520 * 359.97438 * 1 2 3 31 31 H 1.07996 * 119.99470 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.00019 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46891 * 2.69938 * 3 2 1 34 34 H 1.08994 * 109.47140 * 242.69821 * 3 2 1 35 35 H 1.08990 * 109.47139 * 185.00443 * 6 4 3 36 36 H 1.09006 * 109.46643 * 305.00025 * 6 4 3 37 37 H 1.07996 * 120.00427 * 359.97438 * 8 7 6 38 38 H 1.08002 * 119.99364 * 180.22606 * 9 8 7 39 39 H 1.08002 * 119.99860 * 179.72376 * 10 9 8 40 40 H 1.07993 * 120.00473 * 179.97438 * 11 10 9 41 41 H 1.07999 * 119.99902 * 0.02562 * 12 7 6 42 42 H 0.97001 * 119.99794 * 355.40467 * 15 13 4 43 43 H 1.09000 * 109.46700 * 299.99909 * 16 15 13 44 44 H 1.08996 * 109.47124 * 59.99511 * 16 15 13 45 45 H 1.09001 * 112.84710 * 45.32562 * 17 16 15 46 46 H 1.08998 * 113.61193 * 334.56710 * 18 17 16 47 47 H 1.08996 * 113.61381 * 105.47209 * 18 17 16 48 48 H 1.09000 * 113.74432 * 139.94479 * 19 18 17 49 49 H 0.97007 * 119.99233 * 72.49443 * 20 19 18 50 50 H 0.97001 * 119.99643 * 180.02562 * 24 23 21 51 51 H 1.08999 * 113.61213 * 254.53132 * 29 17 16 52 52 H 1.08996 * 113.61268 * 25.43185 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9934 1.3571 1.2140 5 1 2.4153 1.1863 2.1221 6 6 3.6618 2.7316 1.2859 7 6 2.6157 3.7863 1.5395 8 6 1.9898 4.4087 0.4757 9 6 1.0267 5.3727 0.7084 10 6 0.6970 5.7217 2.0048 11 6 1.3267 5.1029 3.0685 12 6 2.2861 4.1352 2.8359 13 6 4.0502 0.2908 1.0833 14 8 4.4909 0.0046 -0.0097 15 7 4.5096 -0.3409 2.1817 16 6 5.4621 -1.4457 2.0468 17 6 5.8204 -1.9825 3.4340 18 6 6.9704 -1.2191 4.1118 19 6 7.4795 -2.5855 4.6055 20 7 6.9182 -2.9868 5.8979 21 6 7.7015 -2.9658 7.0208 22 1 8.7330 -2.6529 6.9539 23 6 7.1695 -3.3455 8.2454 24 7 5.9123 -3.7263 8.3271 25 14 8.2379 -3.3161 9.7774 26 1 8.1358 -1.9844 10.4266 27 1 7.7767 -4.3643 10.7228 28 1 9.6506 -3.5761 9.4008 29 6 6.7533 -3.2046 3.3996 30 1 -0.5399 0.9354 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3562 2.1330 0.0484 34 1 2.6534 1.3841 -0.9131 35 1 4.3898 2.7395 2.0970 36 1 4.1666 2.9399 0.3425 37 1 2.2507 4.1395 -0.5371 38 1 0.5350 5.8564 -0.1227 39 1 -0.0522 6.4780 2.1865 40 1 1.0695 5.3758 4.0812 41 1 2.7785 3.6523 3.6669 42 1 4.2096 -0.0639 3.0615 43 1 5.0130 -2.2422 1.4534 44 1 6.3650 -1.0886 1.5514 45 1 4.9484 -2.1167 4.0741 46 1 7.6444 -0.7303 3.4082 47 1 6.6427 -0.5583 4.9142 48 1 8.5636 -2.6912 4.5638 49 1 5.9916 -3.2675 5.9580 50 1 5.5404 -3.9914 9.1829 51 1 6.2505 -4.1443 3.6279 52 1 7.3678 -3.2596 2.5010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101012636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:14 Heat of formation + Delta-G solvation = 3.892878 kcal Electronic energy + Delta-G solvation = -28894.362525 eV Core-core repulsion = 25051.566515 eV Total energy + Delta-G solvation = -3842.796010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.31098 -40.24563 -39.75515 -36.84222 -35.94891 -34.95128 -34.29513 -32.11229 -31.73951 -31.13672 -28.72955 -27.36031 -26.43912 -25.80759 -24.51126 -23.39317 -22.94709 -22.01747 -21.21103 -20.58555 -19.74189 -19.31249 -18.27185 -17.53701 -17.23158 -16.67855 -16.42012 -16.33202 -16.05490 -15.86823 -15.69856 -15.56824 -15.00862 -14.90546 -14.64512 -14.27559 -14.16193 -14.00549 -13.80479 -13.70968 -13.61029 -13.28831 -13.17902 -12.93994 -12.91220 -12.62926 -12.33423 -12.26957 -12.16876 -12.06257 -11.98728 -11.80981 -11.69809 -11.52537 -11.47326 -10.99429 -10.87161 -10.64930 -10.26290 -10.04338 -9.75445 -9.55740 -8.99875 -7.95494 -5.23577 0.46243 0.54960 1.35746 1.48166 1.49038 1.57606 1.64032 2.23039 2.55716 2.92645 3.37140 3.55501 3.71517 3.76273 3.79947 3.88787 3.92823 4.05867 4.13074 4.16021 4.21337 4.24268 4.32845 4.35379 4.40893 4.42212 4.44353 4.55477 4.68886 4.73300 4.77214 4.79605 4.87874 4.92812 4.95658 4.99448 5.07412 5.09858 5.11938 5.21048 5.22813 5.30213 5.35926 5.49818 5.56257 5.62804 5.66527 5.68816 5.72522 5.75181 5.85075 6.16983 6.28259 6.56437 7.24599 7.33334 8.10464 8.32862 9.27778 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.002153 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.095872 B =13003.216537 C =14348.742342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.169 4.169 3 C -0.074 4.074 4 C -0.086 4.086 5 H 0.101 0.899 6 C -0.065 4.065 7 C -0.086 4.086 8 C -0.123 4.123 9 C -0.126 4.126 10 C -0.131 4.131 11 C -0.129 4.129 12 C -0.128 4.128 13 C 0.518 3.482 14 O -0.579 6.579 15 N -0.719 5.719 16 C 0.140 3.860 17 C -0.101 4.101 18 C -0.152 4.152 19 C 0.144 3.856 20 N -0.719 5.719 21 C -0.242 4.242 22 H 0.076 0.924 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.972 3.028 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.270 1.270 29 C -0.135 4.135 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.410 0.590 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.059 0.941 49 H 0.374 0.626 50 H 0.251 0.749 51 H 0.057 0.943 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 17.872 -17.813 27.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.187 4.187 3 C -0.111 4.111 4 C -0.108 4.108 5 H 0.120 0.880 6 C -0.102 4.102 7 C -0.086 4.086 8 C -0.141 4.141 9 C -0.144 4.144 10 C -0.149 4.149 11 C -0.146 4.146 12 C -0.146 4.146 13 C 0.306 3.694 14 O -0.459 6.459 15 N -0.370 5.370 16 C 0.016 3.984 17 C -0.120 4.120 18 C -0.192 4.192 19 C 0.034 3.966 20 N -0.358 5.358 21 C -0.373 4.373 22 H 0.094 0.906 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.801 3.199 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.195 1.195 29 C -0.175 4.175 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.246 0.754 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.206 0.794 50 H 0.060 0.940 51 H 0.076 0.924 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.174 17.638 -18.457 27.868 hybrid contribution 0.009 -0.409 1.557 1.610 sum -11.165 17.229 -16.900 26.591 Atomic orbital electron populations 1.23997 0.95408 1.02690 0.99848 1.22930 0.96480 0.98207 1.01101 1.20709 0.97579 0.95914 0.96929 1.21242 0.94815 0.92982 1.01728 0.88037 1.20464 0.96042 0.90052 1.03685 1.19769 0.97776 0.97348 0.93687 1.21275 0.96946 0.96846 0.99052 1.21423 0.97702 0.97579 0.97656 1.21454 1.00288 1.00332 0.92810 1.21415 0.96552 0.96602 1.00072 1.21292 0.98420 0.98251 0.96597 1.20963 0.82478 0.82330 0.83650 1.90665 1.60360 1.66957 1.27882 1.46109 1.46010 1.35212 1.09685 1.21272 0.92432 0.88358 0.96306 1.22476 0.97305 0.97347 0.94874 1.23716 0.97904 0.98154 0.99450 1.21421 0.96135 0.94218 0.84868 1.42298 1.11778 1.78590 1.03088 1.19663 0.94548 1.35838 0.87291 0.90594 1.25541 0.97601 1.02847 1.00757 1.69807 1.14293 1.52913 1.24926 0.85162 0.78357 0.76864 0.79520 1.21410 1.22335 1.19500 1.23345 0.98309 0.96733 0.99076 0.87295 0.87979 0.89425 0.88898 0.90887 0.89951 0.90365 0.85172 0.84351 0.84502 0.84844 0.85372 0.75384 0.92162 0.91537 0.90117 0.89144 0.93245 0.92280 0.79360 0.94027 0.92443 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 14.32 67.78 0.97 -2.02 16 2 C -0.17 -3.32 9.07 25.65 0.23 -3.08 16 3 C -0.07 -1.32 4.63 29.85 0.14 -1.18 16 4 C -0.09 -1.54 2.16 -11.54 -0.02 -1.56 16 5 H 0.10 1.62 8.13 -2.39 -0.02 1.60 16 6 C -0.06 -1.03 4.82 29.85 0.14 -0.89 16 7 C -0.09 -1.32 4.71 -19.87 -0.09 -1.41 16 8 C -0.12 -1.73 7.88 22.27 0.18 -1.56 16 9 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 10 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 11 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 12 C -0.13 -1.96 9.70 22.27 0.22 -1.74 16 13 C 0.52 12.31 6.10 87.66 0.53 12.85 16 14 O -0.58 -17.94 16.17 -3.04 -0.05 -17.99 16 15 N -0.72 -16.10 5.55 -463.06 -2.57 -18.67 16 16 C 0.14 3.47 5.50 86.38 0.48 3.94 16 17 C -0.10 -2.83 3.62 -10.27 -0.04 -2.87 16 18 C -0.15 -4.72 7.44 31.18 0.23 -4.49 16 19 C 0.14 5.41 4.57 45.57 0.21 5.62 16 20 N -0.72 -35.22 5.31 -320.17 -1.70 -36.92 16 21 C -0.24 -13.17 9.97 84.04 0.84 -12.33 16 22 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 23 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 24 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 25 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 C -0.14 -4.10 7.39 31.12 0.23 -3.87 16 30 H 0.11 1.48 7.84 -2.91 -0.02 1.46 16 31 H 0.10 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.09 2.04 7.81 -2.91 -0.02 2.02 16 33 H 0.09 1.40 5.57 -2.39 -0.01 1.39 16 34 H 0.07 1.48 7.67 -2.39 -0.02 1.47 16 35 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 36 H 0.08 1.32 8.08 -2.38 -0.02 1.30 16 37 H 0.13 1.55 8.01 -2.91 -0.02 1.53 16 38 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 40 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.41 7.92 8.47 -92.71 -0.79 7.13 16 43 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.69 7.87 -2.39 -0.02 1.67 16 45 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.09 2.43 7.92 -2.39 -0.02 2.41 16 47 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 49 H 0.37 19.63 7.90 -92.70 -0.73 18.90 16 50 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 51 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 52 H 0.10 2.61 8.10 -2.39 -0.02 2.59 16 Total: -1.00 -67.36 427.06 2.75 -64.61 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.62 Total: 42.25 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 5.38 Total: -22.77 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -3.99 Total: -113.62 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.05 Total: -17.99 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -67.36 2.75 -64.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101012636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.506 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds