Wall clock time and date at job start Wed Apr 1 2020 02:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00333 * 2 1 3 5 5 N 1.46500 * 109.46954 * 59.99987 * 4 2 1 6 6 C 1.36934 * 119.99803 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99965 * 180.02562 * 6 5 4 9 9 N 1.31615 * 119.99807 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99986 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47119 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47335 * 119.99872 * 10 8 6 13 13 H 1.48502 * 109.46917 * 239.99831 * 10 8 6 14 14 C 1.53005 * 109.47199 * 120.00149 * 2 1 3 15 15 C 1.53042 * 109.45753 * 300.00054 * 14 2 1 16 16 C 1.53192 * 109.30637 * 181.37105 * 15 14 2 17 17 N 1.46929 * 108.77644 * 305.36122 * 16 15 14 18 18 C 1.34775 * 120.63066 * 233.58528 * 17 16 15 19 19 O 1.21280 * 119.99908 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.99687 * 180.02562 * 18 17 16 21 21 F 1.39901 * 110.56296 * 312.67980 * 20 18 17 22 22 C 1.54507 * 110.50850 * 190.00505 * 20 18 17 23 23 C 1.54483 * 104.06211 * 241.35520 * 22 20 18 24 24 O 1.44428 * 104.89902 * 335.96812 * 23 22 20 25 25 C 1.44688 * 105.13885 * 40.49479 * 24 23 22 26 26 C 1.46925 * 118.73387 * 53.86451 * 17 16 15 27 27 C 1.53035 * 109.44556 * 60.06068 * 14 2 1 28 28 H 1.08998 * 109.47264 * 300.00023 * 1 2 3 29 29 H 1.09003 * 109.47112 * 59.99732 * 1 2 3 30 30 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47013 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47739 * 300.00193 * 3 2 1 33 33 H 1.09009 * 109.46757 * 60.00275 * 3 2 1 34 34 H 1.08995 * 109.46681 * 180.02562 * 4 2 1 35 35 H 1.08992 * 109.46551 * 300.00008 * 4 2 1 36 36 H 0.97003 * 120.00015 * 0.02562 * 5 4 2 37 37 H 0.97001 * 119.99700 * 180.02562 * 9 8 6 38 38 H 1.09002 * 109.45801 * 180.02562 * 14 2 1 39 39 H 1.08999 * 109.49531 * 61.41831 * 15 14 2 40 40 H 1.08991 * 109.49648 * 301.31970 * 15 14 2 41 41 H 1.09006 * 109.58093 * 185.58239 * 16 15 14 42 42 H 1.08998 * 109.70696 * 65.22666 * 16 15 14 43 43 H 1.09005 * 110.51421 * 122.71091 * 22 20 18 44 44 H 1.09001 * 110.51335 * 0.02562 * 22 20 18 45 45 H 1.09002 * 110.37322 * 94.85326 * 23 22 20 46 46 H 1.08999 * 110.37312 * 217.08002 * 23 22 20 47 47 H 1.08996 * 110.35300 * 200.67684 * 25 24 23 48 48 H 1.08999 * 110.35366 * 78.36394 * 25 24 23 49 49 H 1.09004 * 109.58523 * 65.92770 * 26 17 16 50 50 H 1.09000 * 109.58394 * 186.34994 * 26 17 16 51 51 H 1.09000 * 109.50453 * 298.57464 * 27 14 2 52 52 H 1.09007 * 109.50304 * 58.67198 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5517 -0.0305 -2.4454 6 6 1.8821 -0.4986 -3.6892 7 1 2.5024 -1.3772 -3.7883 8 6 1.4198 0.1562 -4.8225 9 7 0.6635 1.2265 -4.7017 10 14 1.8699 -0.4828 -6.5192 11 1 2.7229 -1.6907 -6.3830 12 1 0.6319 -0.8315 -7.2614 13 1 2.6134 0.5664 -7.2620 14 6 2.0400 -0.7213 1.2493 15 6 1.5297 0.0003 2.4987 16 6 2.0703 -0.7043 3.7469 17 7 1.7080 -2.1267 3.6813 18 6 1.0552 -2.7168 4.7021 19 8 0.7609 -2.0728 5.6867 20 6 0.6910 -4.1768 4.6199 21 9 0.1025 -4.4677 3.3845 22 6 -0.2580 -4.5639 5.7762 23 6 0.5283 -5.6346 6.5647 24 8 1.4580 -6.1910 5.6097 25 6 1.9384 -5.0594 4.8467 26 6 2.0763 -2.8949 2.4843 27 6 1.5308 -2.1645 1.2479 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 -0.7216 -1.2490 35 1 1.6767 -1.7488 -1.2493 36 1 0.9943 0.7584 -2.3564 37 1 0.3402 1.6838 -5.4937 38 1 3.1300 -0.7208 1.2493 39 1 0.4400 -0.0214 2.5117 40 1 1.8733 1.0346 2.4872 41 1 1.6313 -0.2562 4.6383 42 1 3.1551 -0.6048 3.7843 43 1 -1.1857 -4.9820 5.3852 44 1 -0.4641 -3.6991 6.4069 45 1 1.0659 -5.1761 7.3947 46 1 -0.1468 -6.4076 6.9317 47 1 2.3467 -5.3916 3.8922 48 1 2.6922 -4.5127 5.4132 49 1 3.1617 -2.9704 2.4183 50 1 1.6414 -3.8927 2.5424 51 1 0.4411 -2.1659 1.2728 52 1 1.8752 -2.6710 0.3462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101567099.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:46 Heat of formation + Delta-G solvation = -135.852253 kcal Electronic energy + Delta-G solvation = -32092.494519 eV Core-core repulsion = 27812.869481 eV Total energy + Delta-G solvation = -4279.625038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.30303 -41.59973 -40.41015 -39.43461 -37.49273 -35.54672 -33.35637 -32.85104 -32.16690 -31.59375 -30.16218 -28.18004 -27.51124 -26.69724 -25.16182 -24.39356 -23.80720 -23.39230 -21.78622 -20.47650 -19.57801 -19.19309 -18.64482 -18.08777 -17.43716 -17.04087 -16.65636 -16.54321 -16.26940 -16.15152 -15.79139 -15.46505 -15.34502 -15.29485 -15.10097 -15.05886 -14.73069 -14.33806 -14.12835 -13.95529 -13.79424 -13.39415 -13.32808 -13.11722 -13.07357 -12.84382 -12.84194 -12.76986 -12.64896 -12.50349 -12.22487 -12.11345 -12.04984 -11.94018 -11.85759 -11.76045 -11.26479 -11.18230 -10.96802 -10.94738 -10.87073 -10.77152 -9.78825 -8.92154 -7.92743 -5.19234 1.13204 1.47270 1.47645 1.57646 1.67684 2.57483 2.66109 2.75279 3.14897 3.29613 3.41103 3.48388 3.68171 3.75804 3.78096 3.95218 4.05401 4.07505 4.16031 4.26881 4.28242 4.35418 4.37396 4.41146 4.44677 4.52163 4.58021 4.70195 4.72947 4.78926 4.81474 4.85746 4.85968 4.89963 4.94509 4.99764 5.03499 5.07121 5.15612 5.24227 5.26752 5.31998 5.38384 5.47256 5.50664 5.52558 5.64886 5.68235 6.14150 6.30710 6.76851 7.37033 8.17077 8.38934 9.31351 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.019617 B = 0.002466 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.970298 B =11349.711378 C =12174.332473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.133 4.133 4 C 0.160 3.840 5 N -0.741 5.741 6 C -0.237 4.237 7 H 0.074 0.926 8 C -0.079 4.079 9 N -0.971 5.971 10 Si 0.970 3.030 11 H -0.266 1.266 12 H -0.295 1.295 13 H -0.295 1.295 14 C -0.063 4.063 15 C -0.125 4.125 16 C 0.111 3.889 17 N -0.591 5.591 18 C 0.506 3.494 19 O -0.554 6.554 20 C 0.067 3.933 21 F -0.184 7.184 22 C -0.170 4.170 23 C 0.046 3.954 24 O -0.378 6.378 25 C 0.038 3.962 26 C 0.087 3.913 27 C -0.130 4.130 28 H 0.065 0.935 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.016 0.984 35 H 0.022 0.978 36 H 0.375 0.625 37 H 0.249 0.751 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.122 0.878 47 H 0.128 0.872 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.105 0.895 51 H 0.058 0.942 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.304 -11.223 25.596 28.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.056 4.056 3 C -0.190 4.190 4 C 0.034 3.966 5 N -0.385 5.385 6 C -0.369 4.369 7 H 0.092 0.908 8 C -0.271 4.271 9 N -0.622 5.622 10 Si 0.800 3.200 11 H -0.190 1.190 12 H -0.223 1.223 13 H -0.222 1.222 14 C -0.082 4.082 15 C -0.163 4.163 16 C -0.011 4.011 17 N -0.322 5.322 18 C 0.291 3.709 19 O -0.433 6.433 20 C 0.045 3.955 21 F -0.164 7.164 22 C -0.208 4.208 23 C -0.031 4.031 24 O -0.297 6.297 25 C -0.040 4.040 26 C -0.035 4.035 27 C -0.168 4.168 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.034 0.966 35 H 0.040 0.960 36 H 0.208 0.792 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.097 0.903 46 H 0.140 0.860 47 H 0.146 0.854 48 H 0.111 0.889 49 H 0.114 0.886 50 H 0.123 0.877 51 H 0.077 0.923 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.303 -11.239 25.934 28.457 hybrid contribution -0.504 0.592 -1.678 1.849 sum 2.799 -10.648 24.256 26.638 Atomic orbital electron populations 1.21811 0.95280 1.01165 1.00586 1.20596 0.95266 0.95638 0.94071 1.21799 1.00780 0.95400 1.01022 1.20914 0.95570 0.94410 0.85686 1.42659 1.61221 1.33382 1.01198 1.19678 1.24201 1.08003 0.85058 0.90804 1.25518 1.01457 0.98672 1.01416 1.69822 1.41281 1.22467 1.28673 0.85114 0.77034 0.77580 0.80310 1.19009 1.22291 1.22202 1.21029 1.00603 0.93962 0.92619 1.22020 1.00984 1.00247 0.93001 1.21791 1.01207 0.78999 0.99056 1.48232 1.55042 1.11672 1.17287 1.20581 0.78093 0.88917 0.83261 1.90689 1.55283 1.64814 1.32514 1.22610 0.97100 0.93112 0.82668 1.92855 1.85305 1.94274 1.43991 1.23579 0.99350 1.01964 0.95935 1.23642 0.91421 0.96366 0.91629 1.89249 1.61340 1.29184 1.49904 1.24136 0.93050 0.87150 0.99657 1.22488 1.01909 0.96287 0.82776 1.22086 1.01036 0.95812 0.97840 0.91637 0.95180 0.93116 0.92620 0.95158 0.90895 0.96580 0.96011 0.79150 0.94192 0.89794 0.92282 0.88993 0.89805 0.89014 0.87978 0.87487 0.90338 0.86047 0.85412 0.88931 0.88560 0.87674 0.92303 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 7.60 71.98 0.55 -3.57 16 2 C -0.06 -1.63 0.33 -52.18 -0.02 -1.65 16 3 C -0.13 -3.94 7.95 71.98 0.57 -3.37 16 4 C 0.16 6.12 4.80 86.38 0.41 6.54 16 5 N -0.74 -37.15 5.00 -343.45 -1.72 -38.87 16 6 C -0.24 -13.23 9.99 84.03 0.84 -12.39 16 7 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 8 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 9 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 10 Si 0.97 46.45 29.55 68.60 2.03 48.47 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 13 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 14 C -0.06 -1.35 1.51 -10.77 -0.02 -1.37 16 15 C -0.12 -2.33 4.65 30.67 0.14 -2.19 16 16 C 0.11 1.89 6.43 86.36 0.56 2.44 16 17 N -0.59 -10.72 2.97 -818.06 -2.43 -13.14 16 18 C 0.51 10.42 6.70 87.66 0.59 11.01 16 19 O -0.55 -14.29 14.75 -3.03 -0.04 -14.33 16 20 C 0.07 1.16 1.17 -10.53 -0.01 1.15 16 21 F -0.18 -3.70 14.25 44.97 0.64 -3.06 16 22 C -0.17 -2.58 6.51 31.61 0.21 -2.37 16 23 C 0.05 0.55 7.62 72.49 0.55 1.11 16 24 O -0.38 -6.23 11.67 -148.98 -1.74 -7.97 16 25 C 0.04 0.52 6.40 72.48 0.46 0.99 16 26 C 0.09 1.38 5.83 86.51 0.50 1.89 16 27 C -0.13 -2.70 4.66 30.81 0.14 -2.56 16 28 H 0.06 1.76 6.46 -2.39 -0.02 1.74 16 29 H 0.03 1.14 6.86 -2.39 -0.02 1.13 16 30 H 0.05 1.58 6.46 -2.39 -0.02 1.56 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.03 1.11 6.86 -2.39 -0.02 1.10 16 33 H 0.07 1.75 6.40 -2.38 -0.02 1.74 16 34 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.02 0.84 6.40 -2.39 -0.02 0.82 16 36 H 0.38 20.12 5.36 -92.71 -0.50 19.62 16 37 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.27 6.51 -2.39 -0.02 1.26 16 40 H 0.09 1.55 6.36 -2.39 -0.02 1.53 16 41 H 0.08 1.61 7.01 -2.38 -0.02 1.59 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 43 H 0.10 1.43 8.06 -2.38 -0.02 1.41 16 44 H 0.11 1.80 6.56 -2.39 -0.02 1.79 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 46 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.13 1.40 7.48 -2.39 -0.02 1.38 16 48 H 0.09 1.10 7.86 -2.39 -0.02 1.08 16 49 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.11 1.62 3.87 -2.39 -0.01 1.61 16 51 H 0.06 1.41 6.51 -2.39 -0.02 1.40 16 52 H 0.08 1.78 6.36 -2.38 -0.02 1.77 16 Total: -1.00 -69.97 384.72 3.41 -66.56 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.44 Total: 30.38 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 5.95 Total: -8.42 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -3.86 Total: -111.63 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.78 Total: -22.30 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.64 Total: -3.06 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -69.97 3.41 -66.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101567099.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.294 kcal (2) G-P(sol) polarization free energy of solvation -69.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds