Wall clock time and date at job start Wed Apr 1 2020 02:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.08998 * 109.47192 * 305.00392 * 3 2 1 5 5 C 1.53000 * 109.47060 * 65.00062 * 3 2 1 6 6 C 1.53001 * 109.47049 * 185.00237 * 3 2 1 7 7 N 1.46897 * 109.46940 * 175.00361 * 6 3 2 8 8 C 1.46903 * 110.99849 * 179.97438 * 7 6 3 9 9 C 1.53002 * 109.46842 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46740 * 180.02562 * 9 8 7 11 11 H 1.09001 * 110.30688 * 54.30072 * 10 9 8 12 12 C 1.54391 * 110.34397 * 292.12438 * 10 9 8 13 13 N 1.48307 * 104.53768 * 217.33799 * 12 10 9 14 14 C 1.34780 * 127.77083 * 219.52143 * 13 12 10 15 15 O 1.21282 * 119.99429 * 359.95335 * 14 13 12 16 16 C 1.50696 * 119.99960 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.46781 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99841 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00136 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99769 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00207 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99882 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47043 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47147 * 120.00371 * 22 20 18 25 25 H 1.48496 * 109.47272 * 240.00624 * 22 20 18 26 26 C 1.48149 * 104.39376 * 39.45995 * 13 12 10 27 27 C 1.54280 * 110.34087 * 176.47587 * 10 9 8 28 28 H 1.09003 * 110.34762 * 359.89494 * 27 10 9 29 29 C 1.53006 * 110.34386 * 237.74171 * 27 10 9 30 30 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 34 34 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 35 35 H 1.09000 * 109.47227 * 300.00275 * 5 3 2 36 36 H 1.09006 * 109.46717 * 59.99823 * 5 3 2 37 37 H 1.08995 * 109.47185 * 179.97438 * 5 3 2 38 38 H 1.09005 * 109.47062 * 295.00108 * 6 3 2 39 39 H 1.08995 * 109.47139 * 55.00312 * 6 3 2 40 40 H 1.00900 * 110.99865 * 303.94987 * 7 6 3 41 41 H 1.08991 * 109.46958 * 299.99782 * 8 7 6 42 42 H 1.09002 * 109.47133 * 59.99951 * 8 7 6 43 43 H 1.08996 * 109.47107 * 299.99471 * 9 8 7 44 44 H 1.09002 * 109.47038 * 60.00209 * 9 8 7 45 45 H 1.09004 * 110.40277 * 336.05014 * 12 10 9 46 46 H 1.08998 * 110.40403 * 98.48034 * 12 10 9 47 47 H 1.08994 * 109.47518 * 300.00124 * 16 14 13 48 48 H 1.09003 * 109.47300 * 60.00655 * 16 14 13 49 49 H 0.96999 * 120.00202 * 179.97438 * 21 20 18 50 50 H 1.09002 * 110.40975 * 201.68887 * 26 13 12 51 51 H 1.09003 * 110.40680 * 79.25982 * 26 13 12 52 52 H 1.09003 * 109.46815 * 59.99621 * 29 27 10 53 53 H 1.08994 * 109.47357 * 180.02562 * 29 27 10 54 54 H 1.09007 * 109.46931 * 299.99993 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1258 7 7 4.0446 2.8275 -0.2461 8 6 5.5080 2.8684 -0.3685 9 6 5.9689 4.3221 -0.4920 10 6 7.4930 4.3646 -0.6201 11 1 7.8211 3.7313 -1.4443 12 6 8.1553 3.9140 0.6997 13 7 9.3467 4.7869 0.8353 14 6 10.5739 4.4460 1.2760 15 8 10.7995 3.3050 1.6197 16 6 11.6656 5.4827 1.3421 17 16 13.1830 4.7217 1.9704 18 6 14.2583 6.1173 1.9451 19 1 13.8922 7.0750 1.6057 20 6 15.5756 5.9860 2.3624 21 7 16.0216 4.8189 2.7765 22 14 16.7155 7.4658 2.3363 23 1 15.9763 8.6512 1.8326 24 1 17.2066 7.7366 3.7113 25 1 17.8695 7.1860 1.4446 26 6 8.8832 6.1167 0.3755 27 6 7.9729 5.8152 -0.8344 28 1 7.1227 6.4972 -0.8503 29 6 8.7666 5.9258 -2.1378 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 0.5490 2.1252 1.3970 36 1 2.0700 1.5874 2.1492 37 1 1.9990 3.1540 1.3076 38 1 4.0030 0.9835 0.7596 39 1 3.8571 0.8801 -1.0114 40 1 3.6032 3.2970 -1.0225 41 1 5.9592 2.4177 0.5154 42 1 5.8140 2.3139 -1.2556 43 1 5.5177 4.7724 -1.3761 44 1 5.6628 4.8769 0.3949 45 1 7.4753 4.0669 1.5377 46 1 8.4537 2.8676 0.6372 47 1 11.8461 5.8844 0.3451 48 1 11.3610 6.2892 2.0091 49 1 16.9423 4.7271 3.0678 50 1 9.7309 6.7300 0.0699 51 1 8.3168 6.6148 1.1625 52 1 8.1328 5.6336 -2.9751 53 1 9.0987 6.9548 -2.2748 54 1 9.6342 5.2674 -2.0918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103904405.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:54 Heat of formation + Delta-G solvation = -87.703127 kcal Electronic energy + Delta-G solvation = -27196.583540 eV Core-core repulsion = 23485.259581 eV Total energy + Delta-G solvation = -3711.323959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.17425 -39.22203 -38.50003 -36.14075 -34.60369 -34.06569 -32.59669 -31.29534 -30.27278 -28.19431 -27.67636 -27.35418 -26.47710 -24.68388 -23.27788 -22.21119 -20.91816 -20.72370 -20.68602 -19.55454 -18.05419 -17.22232 -16.96696 -16.89886 -16.54588 -16.15925 -15.92005 -15.68745 -15.63525 -15.37807 -15.13972 -14.63910 -14.38924 -14.28132 -14.18863 -13.96552 -13.77507 -13.47329 -13.31376 -13.19582 -13.05242 -12.93177 -12.91779 -12.80808 -12.71317 -12.60452 -12.41967 -12.26432 -12.04376 -11.78855 -11.68793 -11.51669 -11.49549 -11.48223 -11.37062 -11.17181 -11.13657 -10.95306 -10.30161 -9.76197 -9.32838 -8.70218 -8.36091 -6.15254 1.22340 1.40955 1.43886 1.54549 1.56402 2.07781 2.25742 2.98182 3.11891 3.24356 3.53631 3.58361 3.83526 3.90514 3.92161 4.03074 4.15285 4.21898 4.24192 4.29867 4.34476 4.37259 4.41727 4.45028 4.56239 4.60320 4.65207 4.67442 4.68301 4.77101 4.82565 4.85957 4.89374 4.90788 4.92054 5.01689 5.09489 5.13084 5.17377 5.20714 5.22966 5.26432 5.31425 5.32666 5.36559 5.40317 5.53613 5.57758 5.59904 6.08214 6.18552 6.44009 6.53909 7.04939 7.09888 8.73600 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.024421 B = 0.001633 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.286116 B =17139.797609 C =17858.761361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.083 4.083 4 H 0.073 0.927 5 C -0.136 4.136 6 C 0.063 3.937 7 N -0.689 5.689 8 C 0.057 3.943 9 C -0.092 4.092 10 C -0.086 4.086 11 H 0.075 0.925 12 C 0.106 3.894 13 N -0.623 5.623 14 C 0.550 3.450 15 O -0.572 6.572 16 C -0.118 4.118 17 S -0.152 6.152 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.273 1.273 26 C 0.093 3.907 27 C -0.090 4.090 28 H 0.119 0.881 29 C -0.144 4.144 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.027 0.973 40 H 0.347 0.653 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.272 0.728 50 H 0.082 0.918 51 H 0.092 0.908 52 H 0.071 0.929 53 H 0.067 0.933 54 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.532 1.027 -11.352 34.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.102 4.102 4 H 0.092 0.908 5 C -0.194 4.194 6 C -0.066 4.066 7 N -0.320 5.320 8 C -0.072 4.072 9 C -0.130 4.130 10 C -0.106 4.106 11 H 0.094 0.906 12 C -0.016 4.016 13 N -0.357 5.357 14 C 0.338 3.662 15 O -0.451 6.451 16 C -0.269 4.269 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.198 1.198 26 C -0.029 4.029 27 C -0.109 4.109 28 H 0.137 0.863 29 C -0.202 4.202 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.165 0.835 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.081 0.919 50 H 0.100 0.900 51 H 0.111 0.889 52 H 0.090 0.910 53 H 0.086 0.914 54 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -31.963 -0.671 -10.062 33.516 hybrid contribution 1.117 1.045 -0.946 1.798 sum -30.846 0.373 -11.008 32.754 Atomic orbital electron populations 1.21795 0.95177 1.01805 1.02101 1.21553 0.96543 0.95962 1.01808 1.21112 0.93727 0.96288 0.99093 0.90841 1.21731 1.00611 1.00858 0.96167 1.22005 0.95499 0.89204 0.99916 1.60424 1.05565 1.16123 1.49888 1.21969 0.88005 0.97425 0.99820 1.21509 0.91904 0.95800 1.03772 1.22117 0.95852 0.96779 0.95832 0.90617 1.22597 0.85517 0.94659 0.98838 1.48993 1.08784 1.13717 1.64196 1.19735 0.82222 0.88131 0.76090 1.90680 1.81663 1.22668 1.50058 1.23279 0.96931 1.00978 1.05720 1.85600 1.03385 1.18456 1.85034 1.23218 0.98446 0.96607 1.51049 0.89923 1.26147 0.99019 1.00262 0.93646 1.70193 1.17206 1.25693 1.41709 0.84883 0.77355 0.77306 0.78256 1.17938 1.19862 1.19849 1.22849 0.98974 0.83711 0.97336 1.22165 0.98568 0.96421 0.93770 0.86322 1.21864 0.99500 1.02035 0.96758 0.92373 0.92497 0.92606 0.92405 0.92106 0.92527 0.93942 0.92216 0.92256 0.95461 0.83485 0.92390 0.95489 0.89605 0.90346 0.90019 0.92558 0.87733 0.87663 0.91948 0.89974 0.88950 0.90992 0.91437 0.95055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 71.98 0.70 -0.61 16 2 C -0.12 -1.21 5.40 30.60 0.17 -1.04 16 3 C -0.08 -0.87 2.53 -10.79 -0.03 -0.90 16 4 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 5 C -0.14 -1.59 8.84 71.98 0.64 -0.95 16 6 C 0.06 0.79 5.07 86.30 0.44 1.23 16 7 N -0.69 -8.28 5.95 -513.89 -3.06 -11.34 16 8 C 0.06 0.76 5.54 86.30 0.48 1.24 16 9 C -0.09 -0.99 4.65 30.60 0.14 -0.84 16 10 C -0.09 -1.32 2.73 -9.89 -0.03 -1.35 16 11 H 0.08 1.29 7.71 -2.39 -0.02 1.27 16 12 C 0.11 2.48 5.80 86.50 0.50 2.98 16 13 N -0.62 -18.00 3.32 -807.51 -2.68 -20.68 16 14 C 0.55 22.31 7.93 87.66 0.70 23.01 16 15 O -0.57 -28.66 16.13 -3.04 -0.05 -28.71 16 16 C -0.12 -4.99 5.14 71.23 0.37 -4.62 16 17 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 18 C -0.55 -31.68 9.50 67.96 0.65 -31.03 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 22 Si 1.00 43.92 29.55 68.60 2.03 45.94 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.09 1.79 6.47 86.53 0.56 2.35 16 27 C -0.09 -1.23 3.31 -9.89 -0.03 -1.26 16 28 H 0.12 0.98 7.71 -2.39 -0.02 0.96 16 29 C -0.14 -2.14 8.90 71.98 0.64 -1.50 16 30 H 0.06 0.50 6.57 -2.39 -0.02 0.49 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.57 6.56 -2.39 -0.02 0.56 16 36 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.06 0.78 7.75 -2.39 -0.02 0.76 16 38 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.35 3.17 8.73 -89.69 -0.78 2.38 16 41 H 0.06 0.98 7.53 -2.39 -0.02 0.96 16 42 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 43 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.08 0.87 8.02 -2.39 -0.02 0.85 16 45 H 0.08 1.73 7.78 -2.39 -0.02 1.71 16 46 H 0.06 1.59 7.89 -2.39 -0.02 1.57 16 47 H 0.10 4.03 7.95 -2.40 -0.02 4.01 16 48 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 49 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 50 H 0.08 1.61 7.02 -2.39 -0.02 1.60 16 51 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -76.77 436.51 1.76 -75.00 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.06 Total: 18.07 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 6.34 Total: -12.03 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -5.45 Total: -88.39 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.05 Total: -28.71 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -76.77 1.76 -75.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103904405.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.700 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds