Wall clock time and date at job start Wed Apr 1 2020 02:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47431 * 2 1 4 4 H 1.09001 * 109.47141 * 54.99439 * 3 2 1 5 5 C 1.53002 * 109.46879 * 294.99662 * 3 2 1 6 6 C 1.52998 * 109.47364 * 174.99808 * 3 2 1 7 7 N 1.46906 * 109.47020 * 184.99828 * 6 3 2 8 8 C 1.46902 * 110.99573 * 179.97438 * 7 6 3 9 9 C 1.53008 * 109.46622 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.46689 * 180.02562 * 9 8 7 11 11 H 1.08997 * 110.30783 * 54.29636 * 10 9 8 12 12 C 1.54389 * 110.34256 * 292.12166 * 10 9 8 13 13 N 1.48308 * 104.53968 * 217.33737 * 12 10 9 14 14 C 1.34767 * 127.77294 * 219.52263 * 13 12 10 15 15 O 1.21284 * 120.00124 * 359.90013 * 14 13 12 16 16 C 1.50703 * 120.00423 * 179.90231 * 14 13 12 17 17 S 1.80992 * 109.47521 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00071 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99782 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99897 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99852 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00055 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46968 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47119 * 120.00040 * 22 20 18 25 25 H 1.48497 * 109.47556 * 240.00523 * 22 20 18 26 26 C 1.48156 * 104.38914 * 39.46247 * 13 12 10 27 27 C 1.54284 * 110.34083 * 176.47622 * 10 9 8 28 28 H 1.09004 * 110.34426 * 359.89423 * 27 10 9 29 29 C 1.53006 * 110.34377 * 237.74236 * 27 10 9 30 30 H 1.08994 * 109.47010 * 300.00583 * 1 2 3 31 31 H 1.09000 * 109.46523 * 60.00601 * 1 2 3 32 32 H 1.08998 * 109.47087 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47180 * 239.99575 * 2 1 3 34 34 H 1.09005 * 109.47172 * 119.99660 * 2 1 3 35 35 H 1.09004 * 109.47220 * 60.00310 * 5 3 2 36 36 H 1.08999 * 109.47560 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47523 * 300.00078 * 5 3 2 38 38 H 1.09002 * 109.47142 * 65.00038 * 6 3 2 39 39 H 1.09000 * 109.46991 * 304.99783 * 6 3 2 40 40 H 1.00896 * 111.00309 * 56.04370 * 7 6 3 41 41 H 1.08990 * 109.47358 * 299.99539 * 8 7 6 42 42 H 1.09004 * 109.47457 * 60.00221 * 8 7 6 43 43 H 1.09006 * 109.47203 * 299.99590 * 9 8 7 44 44 H 1.08995 * 109.47152 * 60.00028 * 9 8 7 45 45 H 1.09007 * 110.40659 * 336.05142 * 12 10 9 46 46 H 1.09000 * 110.40550 * 98.48092 * 12 10 9 47 47 H 1.09004 * 109.46972 * 299.99987 * 16 14 13 48 48 H 1.09005 * 109.46767 * 59.99480 * 16 14 13 49 49 H 0.97006 * 119.99478 * 179.97438 * 21 20 18 50 50 H 1.09000 * 110.40192 * 201.68861 * 26 13 12 51 51 H 1.09004 * 110.40539 * 79.25573 * 26 13 12 52 52 H 1.08995 * 109.46898 * 59.99183 * 29 27 10 53 53 H 1.08996 * 109.47330 * 180.02562 * 29 27 10 54 54 H 1.09001 * 109.46460 * 299.99906 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6354 2.1264 -1.3074 6 6 3.5649 1.4442 0.1258 7 7 4.0446 2.8275 0.2461 8 6 5.5078 2.8683 0.3697 9 6 5.9689 4.3221 0.4920 10 6 7.4930 4.3646 0.6201 11 1 7.9573 3.8276 -0.2071 12 6 7.9354 3.7581 1.9692 13 7 9.0803 4.5979 2.3974 14 6 10.2223 4.1967 2.9900 15 8 10.3992 3.0216 3.2326 16 6 11.2794 5.2081 3.3514 17 16 12.6815 4.3651 4.1256 18 6 13.7347 5.7435 4.4346 19 1 13.4201 6.7374 4.1524 20 6 14.9681 5.5522 5.0418 21 7 15.3512 4.3408 5.3862 22 14 16.0843 7.0135 5.3701 23 1 15.4262 8.2562 4.8925 24 1 16.3438 7.1204 6.8283 25 1 17.3699 6.8260 4.6509 26 6 8.6853 5.9765 2.0251 27 6 7.9877 5.8255 0.6562 28 1 7.1450 6.5129 0.5808 29 6 8.9823 6.0785 -0.4786 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 0.5490 2.1252 -1.3970 36 1 1.9983 3.1542 -1.3073 37 1 2.0700 1.5873 -2.1492 38 1 4.0030 0.9835 -0.7596 39 1 3.8570 0.8800 1.0114 40 1 3.6032 3.2971 1.0225 41 1 5.8131 2.3141 1.2572 42 1 5.9599 2.4172 -0.5137 43 1 5.6637 4.8760 -0.3959 44 1 5.5170 4.7735 1.3751 45 1 7.1262 3.8196 2.6971 46 1 8.2499 2.7231 1.8357 47 1 11.6163 5.7195 2.4496 48 1 10.8629 5.9360 4.0477 49 1 16.2134 4.2071 5.8102 50 1 9.5657 6.6128 1.9349 51 1 7.9933 6.3855 2.7613 52 1 8.4965 5.8912 -1.4361 53 1 9.3226 7.1133 -0.4396 54 1 9.8369 5.4110 -0.3681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103904406.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:57 Heat of formation + Delta-G solvation = -87.774554 kcal Electronic energy + Delta-G solvation = -27180.256302 eV Core-core repulsion = 23468.929245 eV Total energy + Delta-G solvation = -3711.327056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18361 -39.22827 -38.49849 -36.13945 -34.60640 -34.06923 -32.59562 -31.29846 -30.27081 -28.19714 -27.67887 -27.35696 -26.48407 -24.67367 -23.26392 -22.23160 -20.94551 -20.71159 -20.68296 -19.56132 -18.06162 -17.13895 -16.97152 -16.89924 -16.58992 -16.07580 -15.97742 -15.87332 -15.58102 -15.37818 -15.14127 -14.57910 -14.43052 -14.29308 -14.12642 -13.98057 -13.71536 -13.55200 -13.29840 -13.19102 -13.05738 -12.93811 -12.92092 -12.82243 -12.73778 -12.61910 -12.36668 -12.26268 -12.04129 -11.78169 -11.68546 -11.53165 -11.49192 -11.47920 -11.38674 -11.17445 -11.13928 -10.95955 -10.30577 -9.77310 -9.33878 -8.70584 -8.36456 -6.15609 1.21969 1.40757 1.43632 1.53767 1.56158 2.06966 2.25463 2.97879 3.11620 3.24116 3.54119 3.58067 3.82745 3.89363 3.91775 4.03069 4.16049 4.17517 4.23296 4.28805 4.36576 4.39983 4.41454 4.48356 4.54320 4.58989 4.65410 4.66884 4.69015 4.74682 4.81944 4.86196 4.87308 4.91332 4.95632 4.98097 5.09629 5.13083 5.17588 5.20722 5.22999 5.28471 5.30459 5.34989 5.36082 5.40052 5.53351 5.56638 5.60431 6.07843 6.18248 6.43005 6.50594 7.04637 7.09101 8.73219 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.025254 B = 0.001624 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.469826 B =17236.851463 C =18057.791143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.085 4.085 4 H 0.070 0.930 5 C -0.135 4.135 6 C 0.063 3.937 7 N -0.687 5.687 8 C 0.057 3.943 9 C -0.091 4.091 10 C -0.086 4.086 11 H 0.075 0.925 12 C 0.106 3.894 13 N -0.622 5.622 14 C 0.550 3.450 15 O -0.572 6.572 16 C -0.118 4.118 17 S -0.152 6.152 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.001 2.999 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.273 1.273 26 C 0.093 3.907 27 C -0.090 4.090 28 H 0.119 0.881 29 C -0.145 4.145 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.023 0.977 40 H 0.345 0.655 41 H 0.021 0.979 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.271 0.729 50 H 0.082 0.918 51 H 0.094 0.906 52 H 0.070 0.930 53 H 0.067 0.933 54 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.384 2.550 -14.736 33.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.103 4.103 4 H 0.088 0.912 5 C -0.192 4.192 6 C -0.067 4.067 7 N -0.318 5.318 8 C -0.073 4.073 9 C -0.129 4.129 10 C -0.106 4.106 11 H 0.094 0.906 12 C -0.016 4.016 13 N -0.357 5.357 14 C 0.338 3.662 15 O -0.451 6.451 16 C -0.269 4.269 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.028 4.028 27 C -0.109 4.109 28 H 0.137 0.863 29 C -0.202 4.202 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.163 0.837 41 H 0.040 0.960 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.112 0.888 52 H 0.089 0.911 53 H 0.086 0.914 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -29.904 0.787 -14.942 33.439 hybrid contribution 1.110 1.035 1.105 1.877 sum -28.794 1.823 -13.838 31.999 Atomic orbital electron populations 1.21794 0.95194 1.01803 1.02093 1.21551 0.96534 0.95981 1.01803 1.21116 0.93734 0.96287 0.99199 0.91190 1.21719 1.00605 1.00854 0.96022 1.22013 0.95518 0.89204 0.99922 1.60479 1.05546 1.16034 1.49711 1.21982 0.88041 0.97406 0.99831 1.21505 0.91873 0.95830 1.03723 1.22117 0.96819 0.96041 0.95642 0.90636 1.22598 0.87362 0.95033 0.96586 1.48989 1.16119 1.11285 1.59291 1.19733 0.81601 0.88359 0.76469 1.90681 1.79001 1.20085 1.55313 1.23282 0.97765 1.01137 1.04739 1.85596 1.14048 1.15321 1.77514 1.23217 1.05127 0.94399 1.46575 0.89921 1.26147 0.98728 1.00044 0.94161 1.70198 1.21737 1.23220 1.39640 0.84882 0.77347 0.77417 0.78151 1.17939 1.19853 1.19861 1.22853 1.00538 0.82218 0.97229 1.22164 0.99061 0.96478 0.93225 0.86329 1.21862 0.98298 1.01755 0.98284 0.92708 0.92179 0.92607 0.92106 0.92415 0.92593 0.92164 0.93611 0.91772 0.95914 0.83700 0.96035 0.91780 0.89504 0.90496 0.89974 0.92613 0.87760 0.87628 0.91951 0.89999 0.88828 0.91074 0.91432 0.95041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 71.98 0.70 -0.64 16 2 C -0.12 -1.23 5.40 30.59 0.17 -1.06 16 3 C -0.08 -0.89 2.53 -10.80 -0.03 -0.92 16 4 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 5 C -0.13 -1.44 8.84 71.98 0.64 -0.80 16 6 C 0.06 0.79 5.07 86.30 0.44 1.23 16 7 N -0.69 -8.27 5.96 -513.86 -3.06 -11.34 16 8 C 0.06 0.75 5.54 86.31 0.48 1.23 16 9 C -0.09 -0.98 4.65 30.60 0.14 -0.84 16 10 C -0.09 -1.32 2.73 -9.89 -0.03 -1.35 16 11 H 0.08 1.32 7.71 -2.39 -0.02 1.30 16 12 C 0.11 2.43 5.80 86.50 0.50 2.93 16 13 N -0.62 -17.73 3.32 -807.51 -2.68 -20.41 16 14 C 0.55 22.14 7.93 87.66 0.70 22.83 16 15 O -0.57 -28.49 16.13 -3.04 -0.05 -28.53 16 16 C -0.12 -4.97 5.13 71.24 0.37 -4.60 16 17 S -0.15 -8.69 20.57 -56.49 -1.16 -9.86 16 18 C -0.55 -31.60 9.50 67.95 0.65 -30.95 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.80 5.49 84.86 0.47 1.26 16 21 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 22 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C 0.09 1.76 6.47 86.53 0.56 2.32 16 27 C -0.09 -1.23 3.31 -9.89 -0.03 -1.27 16 28 H 0.12 0.98 7.71 -2.39 -0.02 0.97 16 29 C -0.14 -2.20 8.90 71.98 0.64 -1.56 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.50 6.56 -2.39 -0.02 0.48 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.06 0.52 6.57 -2.38 -0.02 0.51 16 36 H 0.06 0.72 7.75 -2.39 -0.02 0.70 16 37 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.34 3.49 8.73 -89.70 -0.78 2.70 16 41 H 0.02 0.33 7.53 -2.39 -0.02 0.32 16 42 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.08 0.69 8.02 -2.39 -0.02 0.67 16 45 H 0.08 1.63 7.78 -2.38 -0.02 1.61 16 46 H 0.06 1.56 7.89 -2.39 -0.02 1.54 16 47 H 0.10 4.01 7.95 -2.39 -0.02 3.99 16 48 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 49 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 50 H 0.08 1.59 7.02 -2.39 -0.02 1.57 16 51 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 52 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 54 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -76.35 436.51 1.76 -74.59 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.06 Total: 18.12 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 6.34 Total: -12.18 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -5.45 Total: -88.00 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.05 Total: -28.53 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.86 kcal Total: -76.35 1.76 -74.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103904406.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.182 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds